Wall clock time and date at job start Sun Mar 29 2020 23:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00130 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00177 * 3 2 1 7 7 C 1.38956 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 0.27554 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 H 1.08995 * 112.82613 * 48.88949 * 12 10 9 14 14 C 1.53514 * 113.58464 * 180.02562 * 12 10 9 15 15 C 1.51605 * 87.25216 * 114.59123 * 14 12 10 16 16 C 1.38990 * 92.75251 * 359.97438 * 15 14 12 17 17 C 1.38332 * 119.72456 * 180.02562 * 16 15 14 18 18 C 1.38142 * 120.36057 * 359.97438 * 17 16 15 19 19 C 1.38176 * 119.96844 * 0.02745 * 18 17 16 20 20 C 1.38263 * 119.94037 * 359.97438 * 19 18 17 21 21 Cl 1.73602 * 119.85077 * 180.02562 * 20 19 18 22 22 H 0.96991 * 119.99827 * 359.97438 * 1 2 3 23 23 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 24 24 H 1.09001 * 113.58366 * 229.18269 * 14 12 10 25 25 H 1.08998 * 113.59219 * 0.02562 * 14 12 10 26 26 H 1.08002 * 119.81890 * 179.97438 * 17 16 15 27 27 H 1.07998 * 120.01699 * 180.02562 * 18 17 16 28 28 H 1.07999 * 120.03762 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0090 -1.2034 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0068 10 6 1.9974 -3.5578 -0.0130 11 8 3.2103 -3.5578 -0.0135 12 6 1.2439 -4.8629 -0.0204 13 1 0.4607 -4.8947 -0.7778 14 6 2.1552 -6.0983 -0.0263 15 6 1.6040 -6.4212 1.3486 16 6 0.7793 -5.3024 1.3543 17 6 -0.0303 -5.0526 2.4477 18 6 -0.0233 -5.9088 3.5318 19 6 0.7962 -7.0213 3.5274 20 6 1.6077 -7.2763 2.4374 21 17 2.6358 -8.6751 2.4340 22 1 -0.4849 0.8400 0.0004 23 1 0.3535 -2.3907 -0.0068 24 1 1.8892 -6.8329 -0.7864 25 1 3.2180 -5.8564 -0.0238 26 1 -0.6715 -4.1835 2.4539 27 1 -0.6579 -5.7087 4.3824 28 1 0.8029 -7.6912 4.3745 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527533974.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:12:25 Heat of formation + Delta-G solvation = 10.314830 kcal Electronic energy + Delta-G solvation = -15411.250618 eV Core-core repulsion = 12646.886296 eV Total energy + Delta-G solvation = -2764.364322 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.045 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.51241 -37.93188 -36.38251 -34.97896 -33.89531 -31.30763 -30.36956 -27.60093 -25.79630 -24.01059 -21.84102 -20.78058 -18.90771 -17.90635 -16.82269 -16.29533 -15.53328 -14.80736 -14.75848 -14.03369 -13.80239 -13.50928 -13.19485 -12.75649 -12.54158 -12.01369 -11.55265 -11.45970 -11.30836 -11.25814 -11.10740 -10.60153 -10.47221 -10.38362 -10.27168 -9.59635 -8.96242 -8.50334 -8.19641 -8.04961 -6.48906 -3.89532 1.30572 1.34073 2.26853 3.11214 3.23678 3.30895 3.61293 3.78196 4.12008 4.35114 4.56248 4.78521 4.96904 5.05158 5.24623 5.41868 5.59098 5.68256 5.74660 5.89803 6.05045 6.22796 6.25705 6.43789 6.46909 6.75119 6.96000 7.49137 7.97989 8.51715 9.09620 9.45410 9.95778 10.68352 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.037481 B = 0.005290 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.872263 B = 5291.471186 C = 5647.026336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.930 3.070 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.301 4.301 8 H 0.105 0.895 9 N -0.552 5.552 10 C 0.453 3.547 11 O -0.588 6.588 12 C -0.059 4.059 13 H 0.111 0.889 14 C -0.050 4.050 15 C -0.115 4.115 16 C -0.092 4.092 17 C -0.086 4.086 18 C -0.109 4.109 19 C -0.116 4.116 20 C -0.011 4.011 21 Cl -0.086 7.086 22 H 0.272 0.728 23 H 0.394 0.606 24 H 0.093 0.907 25 H 0.113 0.887 26 H 0.128 0.872 27 H 0.134 0.866 28 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.699 -12.201 4.230 13.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.431 4.431 8 H 0.123 0.877 9 N -0.186 5.186 10 C 0.238 3.762 11 O -0.474 6.474 12 C -0.080 4.080 13 H 0.129 0.871 14 C -0.087 4.087 15 C -0.116 4.116 16 C -0.093 4.093 17 C -0.104 4.104 18 C -0.127 4.127 19 C -0.134 4.134 20 C -0.038 4.038 21 Cl -0.057 7.057 22 H 0.082 0.918 23 H 0.227 0.773 24 H 0.111 0.889 25 H 0.131 0.869 26 H 0.146 0.854 27 H 0.152 0.848 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.933 -12.141 4.238 13.004 hybrid contribution -0.270 0.760 0.173 0.825 sum -2.203 -11.381 4.411 12.403 Atomic orbital electron populations 1.69617 1.05969 1.28248 1.49972 1.25291 0.95647 0.99812 0.97010 0.85791 0.79775 0.80974 0.77787 1.19133 1.20639 1.20670 1.19800 0.93487 0.82133 1.47671 0.87727 1.41848 1.09294 1.04500 1.62975 1.19225 0.87850 0.84095 0.85035 1.90520 1.13616 1.86724 1.56513 1.21507 0.97958 0.95541 0.93035 0.87074 1.21786 1.02066 0.94398 0.90462 1.22181 0.98462 0.94541 0.96374 1.22017 0.95713 0.95476 0.96067 1.20526 0.98494 0.99510 0.91851 1.20899 0.99386 0.94180 0.98281 1.20840 0.96751 0.98836 0.97003 1.20280 0.97376 0.90517 0.95603 1.98341 1.67368 1.41355 1.98667 0.91775 0.77277 0.88892 0.86885 0.85359 0.84824 0.84918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.90 13.05 55.50 0.72 -23.17 15 2 C 0.02 0.65 5.50 -17.46 -0.10 0.55 15 3 Si 0.93 20.73 29.55 -169.99 -5.02 15.70 15 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 15 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 15 7 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 15 8 H 0.10 3.03 7.16 -52.49 -0.38 2.66 15 9 N -0.55 -13.83 5.29 -10.96 -0.06 -13.88 15 10 C 0.45 10.65 7.32 -10.98 -0.08 10.57 15 11 O -0.59 -15.90 15.28 5.55 0.08 -15.82 15 12 C -0.06 -1.06 4.33 -92.22 -0.40 -1.46 15 13 H 0.11 1.71 8.14 -51.93 -0.42 1.28 15 14 C -0.05 -0.81 7.77 -27.19 -0.21 -1.02 15 15 C -0.11 -1.89 7.26 -103.84 -0.75 -2.64 15 16 C -0.09 -1.57 6.97 -103.88 -0.72 -2.30 15 17 C -0.09 -1.32 10.03 -39.58 -0.40 -1.71 15 18 C -0.11 -1.42 10.04 -39.64 -0.40 -1.82 15 19 C -0.12 -1.52 9.82 -39.59 -0.39 -1.91 15 20 C -0.01 -0.17 6.32 -39.50 -0.25 -0.42 15 21 Cl -0.09 -1.16 28.94 -51.86 -1.50 -2.66 15 22 H 0.27 6.84 8.31 -40.82 -0.34 6.50 15 23 H 0.39 9.41 7.90 -40.82 -0.32 9.09 15 24 H 0.09 1.21 8.14 -51.93 -0.42 0.79 15 25 H 0.11 2.05 7.04 -51.93 -0.37 1.68 15 26 H 0.13 1.86 8.06 -52.49 -0.42 1.44 15 27 H 0.13 1.32 8.06 -52.49 -0.42 0.90 15 28 H 0.13 1.39 8.06 -52.49 -0.42 0.97 15 LS Contribution 269.34 15.07 4.06 4.06 Total: -1.00 -30.27 269.34 -7.87 -38.14 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -2.31 Total: 8.23 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -3.84 Total: -10.60 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.67 Total: -37.06 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: 0.08 Total: -15.82 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -1.50 Total: -2.66 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.27 -7.87 -38.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527533974.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.459 kcal (2) G-P(sol) polarization free energy of solvation -30.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds