Wall clock time and date at job start Sun Mar 29 2020 23:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00130 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00177 * 3 2 1 7 7 C 1.38956 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 0.27554 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 H 1.08995 * 112.82613 * 48.88949 * 12 10 9 14 14 C 1.53514 * 113.58464 * 180.02562 * 12 10 9 15 15 C 1.51605 * 87.25216 * 114.59123 * 14 12 10 16 16 C 1.38990 * 92.75251 * 359.97438 * 15 14 12 17 17 C 1.38332 * 119.72456 * 180.02562 * 16 15 14 18 18 C 1.38142 * 120.36057 * 359.97438 * 17 16 15 19 19 C 1.38176 * 119.96844 * 0.02745 * 18 17 16 20 20 C 1.38263 * 119.94037 * 359.97438 * 19 18 17 21 21 Cl 1.73602 * 119.85077 * 180.02562 * 20 19 18 22 22 H 0.96991 * 119.99827 * 359.97438 * 1 2 3 23 23 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 24 24 H 1.09001 * 113.58366 * 229.18269 * 14 12 10 25 25 H 1.08998 * 113.59219 * 0.02562 * 14 12 10 26 26 H 1.08002 * 119.81890 * 179.97438 * 17 16 15 27 27 H 1.07998 * 120.01699 * 180.02562 * 18 17 16 28 28 H 1.07999 * 120.03762 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0090 -1.2034 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0068 10 6 1.9974 -3.5578 -0.0130 11 8 3.2103 -3.5578 -0.0135 12 6 1.2439 -4.8629 -0.0204 13 1 0.4607 -4.8947 -0.7778 14 6 2.1552 -6.0983 -0.0263 15 6 1.6040 -6.4212 1.3486 16 6 0.7793 -5.3024 1.3543 17 6 -0.0303 -5.0526 2.4477 18 6 -0.0233 -5.9088 3.5318 19 6 0.7962 -7.0213 3.5274 20 6 1.6077 -7.2763 2.4374 21 17 2.6358 -8.6751 2.4340 22 1 -0.4849 0.8400 0.0004 23 1 0.3535 -2.3907 -0.0068 24 1 1.8892 -6.8329 -0.7864 25 1 3.2180 -5.8564 -0.0238 26 1 -0.6715 -4.1835 2.4539 27 1 -0.6579 -5.7087 4.3824 28 1 0.8029 -7.6912 4.3745 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527533974.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:12:25 Heat of formation + Delta-G solvation = -7.685123 kcal Electronic energy + Delta-G solvation = -15412.031154 eV Core-core repulsion = 12646.886296 eV Total energy + Delta-G solvation = -2765.144859 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.045 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.83409 -39.65608 -37.52252 -36.38072 -35.76022 -33.31311 -31.52837 -28.93414 -27.46956 -25.58685 -23.15801 -22.07749 -20.61334 -19.81757 -18.23793 -17.77216 -16.81373 -16.61274 -15.97035 -15.82823 -15.43607 -15.13976 -14.24740 -14.19256 -13.89619 -13.67260 -13.13269 -12.95962 -12.88570 -12.45296 -12.42159 -12.36127 -12.12272 -11.75918 -11.68456 -11.54921 -10.63582 -10.06965 -9.65025 -9.60537 -8.50667 -5.99888 0.14629 0.20005 1.15723 1.34059 1.41192 1.55153 1.90259 2.27155 2.58018 2.99549 3.12851 3.25055 3.39992 3.55666 4.04216 4.25623 4.34912 4.40330 4.52730 4.62363 4.78551 4.88474 5.07131 5.16448 5.36104 5.38214 5.57233 5.81100 5.95006 6.52556 7.06504 7.48268 8.02613 8.66459 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.037481 B = 0.005290 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.872263 B = 5291.471186 C = 5647.026336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.008 4.008 3 Si 0.992 3.008 4 H -0.274 1.274 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.079 0.921 9 N -0.560 5.560 10 C 0.452 3.548 11 O -0.630 6.630 12 C -0.057 4.057 13 H 0.136 0.864 14 C -0.045 4.045 15 C -0.129 4.129 16 C -0.119 4.119 17 C -0.098 4.098 18 C -0.100 4.100 19 C -0.108 4.108 20 C -0.023 4.023 21 Cl -0.075 7.075 22 H 0.280 0.720 23 H 0.398 0.602 24 H 0.125 0.875 25 H 0.088 0.912 26 H 0.131 0.869 27 H 0.171 0.829 28 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.688 -12.834 5.342 14.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.209 4.209 3 Si 0.816 3.184 4 H -0.199 1.199 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.097 0.903 9 N -0.194 5.194 10 C 0.239 3.761 11 O -0.518 6.518 12 C -0.078 4.078 13 H 0.154 0.846 14 C -0.082 4.082 15 C -0.129 4.129 16 C -0.120 4.120 17 C -0.116 4.116 18 C -0.118 4.118 19 C -0.126 4.126 20 C -0.049 4.049 21 Cl -0.047 7.047 22 H 0.089 0.911 23 H 0.232 0.768 24 H 0.143 0.857 25 H 0.106 0.894 26 H 0.149 0.851 27 H 0.188 0.812 28 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.951 -12.788 5.349 14.172 hybrid contribution 0.026 0.875 -0.114 0.883 sum -2.925 -11.913 5.235 13.337 Atomic orbital electron populations 1.69669 1.06800 1.29447 1.49564 1.26046 0.96546 1.02369 0.95892 0.84881 0.78043 0.77019 0.78472 1.19851 1.19369 1.19487 1.19738 0.92758 0.83919 1.50283 0.90276 1.41890 1.09371 1.04557 1.63611 1.20177 0.87688 0.85497 0.82741 1.90482 1.15753 1.87749 1.57779 1.21432 0.98574 0.92682 0.95159 0.84593 1.21740 1.00204 0.94270 0.91962 1.22198 0.98719 0.95162 0.96862 1.21974 0.97581 0.96292 0.96193 1.20792 0.98422 1.00274 0.92133 1.21318 0.99072 0.93104 0.98294 1.21275 0.95290 0.98969 0.97069 1.20510 0.97928 0.90817 0.95694 1.98343 1.67114 1.40549 1.98649 0.91091 0.76826 0.85680 0.89359 0.85124 0.81205 0.81779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.53 13.05 21.67 0.28 -48.25 15 2 C -0.01 -0.42 5.50 84.93 0.47 0.05 15 3 Si 0.99 42.46 29.55 68.60 2.03 44.49 15 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 15 5 H -0.27 -10.94 7.11 99.48 0.71 -10.24 15 6 H -0.27 -11.02 7.11 99.48 0.71 -10.32 15 7 C -0.34 -19.15 9.68 84.04 0.81 -18.34 15 8 H 0.08 4.81 7.16 -2.91 -0.02 4.79 15 9 N -0.56 -28.86 5.29 -306.97 -1.62 -30.49 15 10 C 0.45 21.92 7.32 87.66 0.64 22.56 15 11 O -0.63 -35.50 15.28 -3.07 -0.05 -35.55 15 12 C -0.06 -2.07 4.33 -11.83 -0.05 -2.12 15 13 H 0.14 4.10 8.14 -2.39 -0.02 4.08 15 14 C -0.04 -1.45 7.77 30.30 0.24 -1.21 15 15 C -0.13 -4.11 7.26 -19.36 -0.14 -4.25 15 16 C -0.12 -4.02 6.97 -19.38 -0.14 -4.16 15 17 C -0.10 -2.87 10.03 22.27 0.22 -2.65 15 18 C -0.10 -2.29 10.04 22.23 0.22 -2.07 15 19 C -0.11 -2.48 9.82 22.26 0.22 -2.26 15 20 C -0.02 -0.64 6.32 22.33 0.14 -0.50 15 21 Cl -0.08 -1.89 28.94 -2.72 -0.08 -1.97 15 22 H 0.28 13.79 8.31 -92.71 -0.77 13.02 15 23 H 0.40 19.45 7.90 -92.71 -0.73 18.72 15 24 H 0.13 3.10 8.14 -2.39 -0.02 3.08 15 25 H 0.09 3.29 7.04 -2.39 -0.02 3.27 15 26 H 0.13 3.67 8.06 -2.91 -0.02 3.64 15 27 H 0.17 2.62 8.06 -2.91 -0.02 2.59 15 28 H 0.16 2.72 8.06 -2.91 -0.02 2.69 15 Total: -1.00 -66.27 269.34 3.67 -62.60 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 0.47 Total: 24.12 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: 2.64 Total: -14.96 kcal Atomic # 7 Polarization: -77.39 SS G_CDS: -1.34 Total: -78.73 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -0.05 Total: -35.55 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 17 Polarization: -1.89 SS G_CDS: -0.08 Total: -1.97 kcal Total: -66.27 3.67 -62.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527533974.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.913 kcal (2) G-P(sol) polarization free energy of solvation -66.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds