Wall clock time and date at job start Sun Mar 29 2020 23:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.39985 * 120.23289 * 298.63019 * 3 2 1 5 5 F 1.35103 * 120.06525 * 0.04695 * 4 3 2 6 6 C 1.38103 * 119.86348 * 180.02562 * 4 3 2 7 7 C 1.38497 * 120.32787 * 359.95906 * 6 4 3 8 8 C 1.38025 * 120.47718 * 0.02562 * 7 6 4 9 9 C 1.38925 * 120.13200 * 359.97438 * 8 7 6 10 10 S 1.76196 * 120.16824 * 179.72256 * 9 8 7 11 11 C 1.81399 * 103.00006 * 0.02562 * 10 9 8 12 12 C 1.53001 * 109.46915 * 179.97438 * 11 10 9 13 13 C 1.50707 * 109.46972 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99633 * 359.97438 * 13 12 11 15 15 C 1.37873 * 119.99882 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00139 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00215 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46717 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47186 * 119.99945 * 17 15 13 20 20 H 1.48491 * 109.47404 * 240.00354 * 17 15 13 21 21 H 1.07996 * 119.83494 * 179.97438 * 6 4 3 22 22 H 1.08004 * 119.76171 * 180.02562 * 7 6 4 23 23 H 1.08000 * 119.93681 * 179.97438 * 8 7 6 24 24 H 1.08996 * 109.47377 * 299.99683 * 11 10 9 25 25 H 1.09003 * 109.47037 * 59.99698 * 11 10 9 26 26 H 1.09005 * 109.47336 * 299.99642 * 12 11 10 27 27 H 1.08995 * 109.47515 * 59.99805 * 12 11 10 28 28 H 0.97000 * 120.00081 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2731 -0.5786 1.0616 5 9 2.6039 -1.1420 2.0912 6 6 4.6541 -0.5732 1.0540 7 6 5.3454 0.0018 0.0007 8 6 4.6641 0.5764 -1.0533 9 6 3.2750 0.5819 -1.0656 10 16 2.4043 1.3217 -2.4069 11 6 3.7393 1.9156 -3.4819 12 6 3.1379 2.5946 -4.7141 13 6 4.2470 3.0875 -5.6076 14 1 5.2776 2.9323 -5.3245 15 6 3.9459 3.7364 -6.7862 16 7 2.6908 3.9248 -7.1310 17 14 5.3206 4.3480 -7.8933 18 1 6.6328 4.0132 -7.2839 19 1 5.2122 3.6961 -9.2232 20 1 5.2097 5.8201 -8.0530 21 1 5.1976 -1.0198 1.8734 22 1 6.4255 0.0005 0.0039 23 1 5.2121 1.0227 -1.8700 24 1 4.3541 2.6312 -2.9362 25 1 4.3550 1.0728 -3.7961 26 1 2.5233 1.8786 -5.2599 27 1 2.5220 3.4373 -4.4004 28 1 2.4790 4.3817 -7.9601 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568011755.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:08 Heat of formation + Delta-G solvation = -4.534174 kcal Electronic energy + Delta-G solvation = -14617.517931 eV Core-core repulsion = 11866.926203 eV Total energy + Delta-G solvation = -2750.591727 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.048 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.23077 -39.18938 -36.41681 -33.90897 -31.67710 -31.42358 -30.61814 -25.58115 -24.31882 -23.12473 -21.45960 -19.26126 -17.93278 -16.82553 -16.65552 -15.99323 -15.71037 -15.31401 -14.59638 -14.19630 -13.89359 -13.82920 -13.69970 -13.28341 -12.83327 -12.41478 -12.34091 -12.06705 -11.90316 -11.41588 -11.16783 -10.70215 -10.50338 -10.01779 -9.85712 -9.83646 -9.27237 -9.07669 -8.54895 -7.39986 -6.18205 -4.24137 0.43058 0.82841 1.56929 2.56491 2.78007 2.78122 3.21246 3.29368 3.31858 3.55153 3.69930 3.93789 4.31724 4.54145 4.82229 4.96399 5.12389 5.18000 5.53728 5.67568 5.72792 5.77576 5.84702 6.02049 6.42322 6.46096 7.37411 7.42616 7.46515 7.75606 8.10510 8.80469 9.41038 10.92543 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.038628 B = 0.004563 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.689268 B = 6135.226748 C = 6839.463275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C 0.255 3.745 3 C -0.062 4.062 4 C 0.163 3.837 5 F -0.129 7.129 6 C -0.175 4.175 7 C -0.039 4.039 8 C -0.149 4.149 9 C -0.009 4.009 10 S -0.099 6.099 11 C -0.088 4.088 12 C 0.036 3.964 13 C -0.523 4.523 14 H 0.061 0.939 15 C 0.061 3.939 16 N -0.889 5.889 17 Si 0.899 3.101 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.282 1.282 21 H 0.145 0.855 22 H 0.142 0.858 23 H 0.146 0.854 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.029 0.971 27 H 0.029 0.971 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.948 -7.897 14.359 17.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.074 5.074 2 C -0.061 4.061 3 C -0.074 4.074 4 C 0.140 3.860 5 F -0.107 7.107 6 C -0.197 4.197 7 C -0.060 4.060 8 C -0.174 4.174 9 C -0.126 4.126 10 S 0.154 5.846 11 C -0.236 4.236 12 C -0.003 4.003 13 C -0.563 4.563 14 H 0.079 0.921 15 C -0.142 4.142 16 N -0.527 5.527 17 Si 0.726 3.274 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 H 0.162 0.838 22 H 0.160 0.840 23 H 0.163 0.837 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.776 -7.657 13.921 16.330 hybrid contribution 2.321 0.142 -0.257 2.340 sum 6.097 -7.515 13.663 16.743 Atomic orbital electron populations 1.81186 1.11563 1.07871 1.06758 1.25099 0.92164 0.94360 0.94435 1.15448 0.85020 1.09675 0.97261 1.17462 0.90040 0.94606 0.83917 1.91539 1.80822 1.82180 1.56161 1.20986 0.91214 1.05602 1.01904 1.21120 1.00611 0.92862 0.91402 1.21364 0.91912 1.03137 1.00975 1.22139 0.96568 0.97011 0.96900 1.86211 1.16534 1.65818 1.16055 1.24233 0.96968 1.03015 0.99393 1.18957 0.96933 0.95791 0.88655 1.21049 0.92453 1.37974 1.04867 0.92118 1.25021 0.95711 0.95722 0.97763 1.69972 1.17160 1.41721 1.23807 0.86431 0.81926 0.78589 0.80447 1.19592 1.20833 1.20828 0.83760 0.83981 0.83660 0.89812 0.89815 0.95251 0.95255 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -7.03 18.54 41.84 0.78 -6.25 15 2 C 0.26 4.07 13.93 -22.48 -0.31 3.76 15 3 C -0.06 -0.85 5.77 -106.48 -0.61 -1.46 15 4 C 0.16 1.85 7.28 -38.98 -0.28 1.57 15 5 F -0.13 -1.53 16.81 2.25 0.04 -1.50 15 6 C -0.17 -1.49 10.00 -39.54 -0.40 -1.88 15 7 C -0.04 -0.32 10.02 -39.56 -0.40 -0.72 15 8 C -0.15 -1.65 9.36 -39.41 -0.37 -2.02 15 9 C -0.01 -0.12 6.16 -38.49 -0.24 -0.36 15 10 S -0.10 -1.69 20.91 -107.50 -2.25 -3.94 15 11 C -0.09 -1.61 4.28 37.16 0.16 -1.45 15 12 C 0.04 0.85 4.98 -27.88 -0.14 0.71 15 13 C -0.52 -13.64 9.11 -34.44 -0.31 -13.95 15 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 15 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 16 N -0.89 -25.55 13.29 55.43 0.74 -24.82 15 17 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 15 18 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 20 H -0.28 -6.40 7.11 56.52 0.40 -5.99 15 21 H 0.14 0.83 8.06 -52.49 -0.42 0.41 15 22 H 0.14 0.72 8.06 -52.48 -0.42 0.30 15 23 H 0.15 1.54 5.89 -52.49 -0.31 1.23 15 24 H 0.08 1.40 7.75 -51.93 -0.40 1.00 15 25 H 0.08 1.40 7.75 -51.92 -0.40 1.00 15 26 H 0.03 0.76 8.14 -51.93 -0.42 0.33 15 27 H 0.03 0.76 8.14 -51.93 -0.42 0.33 15 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 15 LS Contribution 276.58 15.07 4.17 4.17 Total: -1.00 -29.34 276.58 -6.90 -36.24 By element: Atomic # 1 Polarization: -2.69 SS G_CDS: -2.35 Total: -5.04 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -3.00 Total: -14.25 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 1.51 Total: -31.07 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.25 Total: -3.94 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.34 -6.90 -36.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568011755.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.703 kcal (2) G-P(sol) polarization free energy of solvation -29.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds