Wall clock time and date at job start Sun Mar 29 2020 23:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.39985 * 120.23289 * 298.63019 * 3 2 1 5 5 F 1.35103 * 120.06525 * 0.04695 * 4 3 2 6 6 C 1.38103 * 119.86348 * 180.02562 * 4 3 2 7 7 C 1.38497 * 120.32787 * 359.95906 * 6 4 3 8 8 C 1.38025 * 120.47718 * 0.02562 * 7 6 4 9 9 C 1.38925 * 120.13200 * 359.97438 * 8 7 6 10 10 S 1.76196 * 120.16824 * 179.72256 * 9 8 7 11 11 C 1.81399 * 103.00006 * 0.02562 * 10 9 8 12 12 C 1.53001 * 109.46915 * 179.97438 * 11 10 9 13 13 C 1.50707 * 109.46972 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99633 * 359.97438 * 13 12 11 15 15 C 1.37873 * 119.99882 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00139 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00215 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46717 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47186 * 119.99945 * 17 15 13 20 20 H 1.48491 * 109.47404 * 240.00354 * 17 15 13 21 21 H 1.07996 * 119.83494 * 179.97438 * 6 4 3 22 22 H 1.08004 * 119.76171 * 180.02562 * 7 6 4 23 23 H 1.08000 * 119.93681 * 179.97438 * 8 7 6 24 24 H 1.08996 * 109.47377 * 299.99683 * 11 10 9 25 25 H 1.09003 * 109.47037 * 59.99698 * 11 10 9 26 26 H 1.09005 * 109.47336 * 299.99642 * 12 11 10 27 27 H 1.08995 * 109.47515 * 59.99805 * 12 11 10 28 28 H 0.97000 * 120.00081 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2731 -0.5786 1.0616 5 9 2.6039 -1.1420 2.0912 6 6 4.6541 -0.5732 1.0540 7 6 5.3454 0.0018 0.0007 8 6 4.6641 0.5764 -1.0533 9 6 3.2750 0.5819 -1.0656 10 16 2.4043 1.3217 -2.4069 11 6 3.7393 1.9156 -3.4819 12 6 3.1379 2.5946 -4.7141 13 6 4.2470 3.0875 -5.6076 14 1 5.2776 2.9323 -5.3245 15 6 3.9459 3.7364 -6.7862 16 7 2.6908 3.9248 -7.1310 17 14 5.3206 4.3480 -7.8933 18 1 6.6328 4.0132 -7.2839 19 1 5.2122 3.6961 -9.2232 20 1 5.2097 5.8201 -8.0530 21 1 5.1976 -1.0198 1.8734 22 1 6.4255 0.0005 0.0039 23 1 5.2121 1.0227 -1.8700 24 1 4.3541 2.6312 -2.9362 25 1 4.3550 1.0728 -3.7961 26 1 2.5233 1.8786 -5.2599 27 1 2.5220 3.4373 -4.4004 28 1 2.4790 4.3817 -7.9601 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568011755.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:08 Heat of formation + Delta-G solvation = -20.314294 kcal Electronic energy + Delta-G solvation = -14618.202208 eV Core-core repulsion = 11866.926203 eV Total energy + Delta-G solvation = -2751.276005 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.048 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.13396 -40.10617 -37.65245 -35.82187 -33.10449 -32.57920 -31.73879 -27.40478 -25.36024 -24.00905 -23.21624 -20.31768 -18.88503 -18.67848 -17.74260 -16.91363 -16.84893 -16.53983 -16.14386 -15.70251 -15.20144 -14.97787 -14.78110 -14.43280 -14.06374 -14.02564 -13.61560 -13.47121 -12.94917 -12.92655 -12.61802 -12.33667 -12.26210 -11.73366 -11.40172 -11.05395 -10.83122 -10.60978 -9.98616 -8.65671 -8.22965 -6.36265 -0.50812 -0.02356 0.33610 1.31362 1.44114 1.44549 1.51491 1.57653 1.75995 2.41704 2.54737 2.65985 3.01741 3.12071 3.79392 3.94026 4.18961 4.21541 4.25698 4.33470 4.70311 4.79085 4.92975 5.05843 5.25495 5.37677 5.44617 5.67572 5.73313 6.08609 6.24691 6.79197 7.34149 8.89199 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.038628 B = 0.004563 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.689268 B = 6135.226748 C = 6839.463275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.266 3.734 3 C -0.082 4.082 4 C 0.158 3.842 5 F -0.134 7.134 6 C -0.148 4.148 7 C -0.015 4.015 8 C -0.148 4.148 9 C -0.016 4.016 10 S -0.160 6.160 11 C -0.066 4.066 12 C 0.039 3.961 13 C -0.534 4.534 14 H 0.078 0.922 15 C -0.001 4.001 16 N -0.935 5.935 17 Si 0.971 3.029 18 H -0.252 1.252 19 H -0.282 1.282 20 H -0.282 1.282 21 H 0.186 0.814 22 H 0.190 0.810 23 H 0.153 0.847 24 H 0.100 0.900 25 H 0.100 0.900 26 H -0.003 1.003 27 H -0.003 1.003 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.049 -8.756 15.931 21.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.049 4.049 3 C -0.094 4.094 4 C 0.134 3.866 5 F -0.112 7.112 6 C -0.169 4.169 7 C -0.036 4.036 8 C -0.172 4.172 9 C -0.132 4.132 10 S 0.089 5.911 11 C -0.213 4.213 12 C 0.000 4.000 13 C -0.574 4.574 14 H 0.096 0.904 15 C -0.199 4.199 16 N -0.575 5.575 17 Si 0.796 3.204 18 H -0.175 1.175 19 H -0.208 1.208 20 H -0.208 1.208 21 H 0.203 0.797 22 H 0.208 0.792 23 H 0.171 0.829 24 H 0.119 0.881 25 H 0.119 0.881 26 H 0.015 0.985 27 H 0.015 0.985 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.902 -8.535 15.527 19.401 hybrid contribution 1.112 0.319 -0.583 1.296 sum 9.014 -8.216 14.944 19.289 Atomic orbital electron populations 1.81168 1.12932 1.09685 1.08298 1.25668 0.92917 0.93134 0.93192 1.15620 0.83746 1.11411 0.98614 1.17675 0.91107 0.94648 0.83142 1.91535 1.81250 1.82236 1.56182 1.21506 0.89627 1.03190 1.02563 1.21644 1.02735 0.89908 0.89295 1.21616 0.90451 1.02953 1.02219 1.21870 0.97441 0.98488 0.95445 1.86352 1.17833 1.68042 1.18858 1.23811 0.96694 1.03472 0.97327 1.18731 0.96065 0.94319 0.90879 1.21560 0.93647 1.37137 1.05061 0.90377 1.26040 0.98109 0.96088 0.99695 1.70128 1.19704 1.43122 1.24513 0.85297 0.79375 0.77658 0.78105 1.17499 1.20815 1.20805 0.79712 0.79235 0.82927 0.88122 0.88127 0.98473 0.98473 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -16.46 18.54 19.00 0.35 -16.10 15 2 C 0.27 8.73 13.93 88.33 1.23 9.96 15 3 C -0.08 -2.17 5.77 -21.07 -0.12 -2.30 15 4 C 0.16 3.12 7.28 22.66 0.16 3.29 15 5 F -0.13 -2.90 16.81 44.97 0.76 -2.15 15 6 C -0.15 -1.68 10.00 22.30 0.22 -1.46 15 7 C -0.02 -0.16 10.02 22.28 0.22 0.06 15 8 C -0.15 -2.73 9.36 22.38 0.21 -2.52 15 9 C -0.02 -0.41 6.16 22.98 0.14 -0.27 15 10 S -0.16 -5.69 20.91 -56.49 -1.18 -6.87 15 11 C -0.07 -2.37 4.28 71.98 0.31 -2.06 15 12 C 0.04 1.93 4.98 29.85 0.15 2.08 15 13 C -0.53 -27.94 9.11 25.60 0.23 -27.70 15 14 H 0.08 3.71 7.74 -2.91 -0.02 3.69 15 15 C 0.00 -0.06 5.46 84.65 0.46 0.41 15 16 N -0.93 -55.55 13.29 21.45 0.28 -55.26 15 17 Si 0.97 41.69 29.54 68.60 2.03 43.72 15 18 H -0.25 -9.90 7.11 99.48 0.71 -9.19 15 19 H -0.28 -12.01 7.11 99.48 0.71 -11.31 15 20 H -0.28 -12.01 7.11 99.48 0.71 -11.30 15 21 H 0.19 0.76 8.06 -2.91 -0.02 0.74 15 22 H 0.19 0.36 8.06 -2.91 -0.02 0.34 15 23 H 0.15 2.63 5.89 -2.91 -0.02 2.61 15 24 H 0.10 3.24 7.75 -2.39 -0.02 3.22 15 25 H 0.10 3.24 7.75 -2.39 -0.02 3.22 15 26 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 15 27 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 15 28 H 0.26 14.77 8.31 -92.71 -0.77 14.00 15 Total: -1.00 -68.19 276.58 6.65 -61.54 By element: Atomic # 1 Polarization: -5.54 SS G_CDS: 1.19 Total: -4.36 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: 3.22 Total: -20.52 kcal Atomic # 7 Polarization: -72.00 SS G_CDS: 0.64 Total: -71.37 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.76 Total: -2.15 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Atomic # 16 Polarization: -5.69 SS G_CDS: -1.18 Total: -6.87 kcal Total: -68.19 6.65 -61.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568011755.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.227 kcal (2) G-P(sol) polarization free energy of solvation -68.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds