Wall clock time and date at job start Sun Mar 29 2020 23:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46498 * 109.46884 * 2 1 4 4 C 1.36346 * 125.63524 * 89.97905 * 3 2 1 5 5 C 1.34847 * 108.21932 * 180.02562 * 4 3 2 6 6 C 1.40895 * 107.41836 * 359.97438 * 5 4 3 7 7 C 1.50702 * 126.28970 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47063 * 90.03011 * 7 6 5 9 9 C 1.46900 * 110.99909 * 293.95076 * 8 7 6 10 10 C 1.46892 * 111.00062 * 169.99837 * 8 7 6 11 11 H 1.09002 * 109.47222 * 173.56136 * 10 8 7 12 12 C 1.52999 * 109.47564 * 53.55831 * 10 8 7 13 13 C 1.53007 * 109.47056 * 293.55784 * 10 8 7 14 14 C 1.50697 * 109.47309 * 296.24430 * 13 10 8 15 15 H 1.08004 * 119.99893 * 355.26722 * 14 13 10 16 16 C 1.37872 * 120.00058 * 175.26435 * 14 13 10 17 17 N 1.31512 * 120.00471 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 120.00061 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47076 * 90.00142 * 18 16 14 20 20 H 1.48499 * 109.47619 * 210.00086 * 18 16 14 21 21 H 1.48501 * 109.47086 * 330.00469 * 18 16 14 22 22 C 1.34845 * 107.41584 * 0.22860 * 6 5 4 23 23 H 1.08999 * 109.47288 * 60.00310 * 1 2 3 24 24 H 1.09011 * 109.46820 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47258 * 299.99462 * 1 2 3 26 26 H 1.09005 * 109.47223 * 240.00489 * 2 1 3 27 27 H 1.09002 * 109.47693 * 120.00001 * 2 1 3 28 28 H 1.07997 * 125.89143 * 359.97438 * 4 3 2 29 29 H 1.08003 * 126.29436 * 180.02562 * 5 4 3 30 30 H 1.08992 * 109.47119 * 330.02557 * 7 6 5 31 31 H 1.09003 * 109.46761 * 210.02222 * 7 6 5 32 32 H 1.09007 * 109.47079 * 302.25106 * 9 8 7 33 33 H 1.08999 * 109.47223 * 62.24614 * 9 8 7 34 34 H 1.08999 * 109.47255 * 182.24897 * 9 8 7 35 35 H 1.08994 * 109.47383 * 179.97438 * 12 10 8 36 36 H 1.08994 * 109.46827 * 300.00354 * 12 10 8 37 37 H 1.09002 * 109.46828 * 60.00295 * 12 10 8 38 38 H 1.08997 * 109.47008 * 56.24488 * 13 10 8 39 39 H 1.09002 * 109.47243 * 176.24524 * 13 10 8 40 40 H 0.96993 * 120.00985 * 179.97438 * 17 16 14 41 41 H 1.08001 * 125.89066 * 179.74697 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2826 2.1303 1.1081 5 6 2.7110 3.3435 0.7045 6 6 2.7118 3.3434 -0.7044 7 6 3.1160 4.4889 -1.5963 8 7 4.5534 4.4003 -1.8860 9 6 5.3494 4.6074 -0.6688 10 6 4.9387 5.3532 -2.9354 11 1 6.0226 5.3486 -3.0502 12 6 4.4732 6.7575 -2.5451 13 6 4.2840 4.9480 -4.2576 14 6 4.8127 3.6043 -4.6889 15 1 5.5977 3.1256 -4.1222 16 6 4.2942 2.9861 -5.8068 17 7 4.7559 1.8137 -6.1836 18 14 2.9360 3.8136 -6.7865 19 1 3.5370 4.6672 -7.8426 20 1 2.0780 2.7778 -7.4160 21 1 2.1131 4.6538 -5.8797 22 6 2.2789 2.1317 -1.1081 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8900 28 1 2.1678 1.8079 2.1325 29 1 3.0012 4.1643 1.3438 30 1 2.9040 5.4327 -1.0941 31 1 2.5538 4.4391 -2.5288 32 1 5.1062 5.5780 -0.2364 33 1 5.1227 3.8215 0.0517 34 1 6.4099 4.5763 -0.9186 35 1 4.7595 7.4646 -3.3236 36 1 3.3893 6.7621 -2.4302 37 1 4.9397 7.0461 -1.6032 38 1 3.2038 4.8878 -4.1247 39 1 4.5154 5.6914 -5.0205 40 1 4.3909 1.3785 -6.9699 41 1 2.1606 1.8106 -2.1324 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591032476.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:59 Heat of formation + Delta-G solvation = 53.573919 kcal Electronic energy + Delta-G solvation = -18892.273820 eV Core-core repulsion = 16194.294133 eV Total energy + Delta-G solvation = -2697.979686 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.83288 -37.71161 -34.16046 -32.69562 -31.06118 -29.43185 -28.68795 -27.62686 -26.10124 -24.18823 -22.91162 -21.84445 -19.82240 -19.42663 -18.37546 -16.76327 -16.46065 -15.20724 -14.71859 -14.42031 -14.30791 -13.91851 -13.72135 -13.20761 -13.05439 -12.82605 -12.38661 -12.19256 -12.04155 -11.92578 -11.78297 -11.60125 -11.43248 -11.42097 -11.16272 -10.83629 -10.60336 -10.37593 -10.16467 -9.56169 -9.44199 -8.93425 -8.36924 -8.11698 -7.63717 -7.25402 -5.84834 -3.77635 2.67321 3.24730 3.38463 3.40399 3.46249 3.49381 4.59098 4.69658 4.94875 4.99047 5.13044 5.29454 5.49587 5.49749 5.54277 5.69884 5.73062 5.77640 5.86124 5.94453 5.96052 6.01537 6.05483 6.10821 6.21969 6.39636 6.52285 6.56830 6.57740 6.68354 6.90556 6.95075 7.23349 7.41716 7.46579 7.66712 7.79182 7.93345 8.03544 8.14775 8.79829 9.28663 9.78417 11.29358 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.016597 B = 0.007538 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.627211 B = 3713.501067 C = 4840.853461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.102 3.898 3 N -0.452 5.452 4 C -0.030 4.030 5 C -0.194 4.194 6 C -0.151 4.151 7 C 0.128 3.872 8 N -0.506 5.506 9 C 0.029 3.971 10 C 0.094 3.906 11 H 0.073 0.927 12 C -0.187 4.187 13 C -0.010 4.010 14 C -0.482 4.482 15 H 0.078 0.922 16 C 0.061 3.939 17 N -0.910 5.910 18 Si 0.869 3.131 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.267 1.267 22 C 0.015 3.985 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.151 0.849 29 H 0.125 0.875 30 H 0.027 0.973 31 H 0.081 0.919 32 H 0.011 0.989 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.043 0.957 38 H 0.019 0.981 39 H 0.011 0.989 40 H 0.258 0.742 41 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.018 0.764 14.156 15.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.020 4.020 3 N -0.129 5.129 4 C -0.159 4.159 5 C -0.219 4.219 6 C -0.158 4.158 7 C 0.001 3.999 8 N -0.229 5.229 9 C -0.120 4.120 10 C -0.014 4.014 11 H 0.091 0.909 12 C -0.246 4.246 13 C -0.047 4.047 14 C -0.520 4.520 15 H 0.096 0.904 16 C -0.138 4.138 17 N -0.551 5.551 18 Si 0.698 3.302 19 H -0.207 1.207 20 H -0.218 1.218 21 H -0.192 1.192 22 C -0.115 4.115 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.078 0.922 26 H 0.108 0.892 27 H 0.102 0.898 28 H 0.169 0.831 29 H 0.143 0.857 30 H 0.045 0.955 31 H 0.100 0.900 32 H 0.029 0.971 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.037 0.963 39 H 0.030 0.970 40 H 0.068 0.932 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -7.063 -0.211 13.842 15.541 hybrid contribution -0.867 1.099 -0.282 1.428 sum -7.930 0.888 13.559 15.733 Atomic orbital electron populations 1.22169 0.94892 1.02520 1.03053 1.21741 0.95029 0.81127 1.04057 1.44071 1.51378 1.11233 1.06198 1.21572 1.10232 0.92946 0.91106 1.20722 1.09223 0.97273 0.94727 1.19352 1.07154 0.96033 0.93247 1.20367 0.89552 0.92695 0.97329 1.62046 1.02929 1.50961 1.06959 1.22344 0.97822 0.98590 0.93235 1.21701 0.99867 0.86837 0.93011 0.90917 1.22562 1.01306 1.00106 1.00604 1.19726 0.96109 0.97526 0.91344 1.21050 1.20296 1.01273 1.09388 0.90420 1.24988 0.96634 0.94844 0.97356 1.69915 1.43543 1.15624 1.26050 0.86951 0.83224 0.79368 0.80693 1.20660 1.21759 1.19210 1.21780 1.06461 0.91892 0.91341 0.91748 0.91151 0.92195 0.89211 0.89822 0.83127 0.85673 0.95547 0.90043 0.97073 0.91665 0.92570 0.92732 0.92911 0.93780 0.96277 0.97043 0.93238 0.81974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 10.24 37.15 0.38 -1.17 16 2 C 0.10 1.09 6.81 -4.05 -0.03 1.07 16 3 N -0.45 -6.49 2.75 -117.13 -0.32 -6.82 16 4 C -0.03 -0.41 11.43 -16.75 -0.19 -0.60 16 5 C -0.19 -3.00 9.56 -39.78 -0.38 -3.38 16 6 C -0.15 -2.70 4.97 -104.82 -0.52 -3.22 16 7 C 0.13 2.42 4.40 -4.98 -0.02 2.40 16 8 N -0.51 -10.21 4.38 -236.33 -1.04 -11.25 16 9 C 0.03 0.50 8.92 60.06 0.54 1.03 16 10 C 0.09 1.93 2.27 -67.71 -0.15 1.78 16 11 H 0.07 1.54 7.98 -51.93 -0.41 1.13 16 12 C -0.19 -3.18 8.45 37.16 0.31 -2.86 16 13 C -0.01 -0.23 3.46 -27.88 -0.10 -0.33 16 14 C -0.48 -13.80 9.36 -34.44 -0.32 -14.13 16 15 H 0.08 2.46 7.99 -52.48 -0.42 2.04 16 16 C 0.06 1.78 5.47 -17.82 -0.10 1.69 16 17 N -0.91 -28.49 13.96 55.43 0.77 -27.71 16 18 Si 0.87 22.00 27.57 -169.99 -4.69 17.32 16 19 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 21 H -0.27 -6.49 6.41 56.52 0.36 -6.13 16 22 C 0.02 0.27 11.35 -16.75 -0.19 0.08 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 29 H 0.13 1.75 8.06 -52.48 -0.42 1.33 16 30 H 0.03 0.47 6.81 -51.93 -0.35 0.11 16 31 H 0.08 1.68 6.04 -51.93 -0.31 1.37 16 32 H 0.01 0.17 6.89 -51.92 -0.36 -0.19 16 33 H 0.06 1.12 6.47 -51.93 -0.34 0.78 16 34 H 0.06 0.95 8.00 -51.93 -0.42 0.53 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.88 6.55 -51.93 -0.34 0.54 16 37 H 0.04 0.68 6.84 -51.93 -0.36 0.32 16 38 H 0.02 0.47 4.95 -51.93 -0.26 0.21 16 39 H 0.01 0.27 7.81 -51.93 -0.41 -0.13 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.16 2.98 8.06 -52.49 -0.42 2.55 16 LS Contribution 323.60 15.07 4.88 4.88 Total: -1.00 -32.00 323.60 -8.11 -40.11 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -6.95 Total: 1.11 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -0.77 Total: -17.65 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: -0.58 Total: -45.77 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.69 Total: 17.32 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.00 -8.11 -40.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591032476.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.687 kcal (2) G-P(sol) polarization free energy of solvation -32.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds