Wall clock time and date at job start Sun Mar 29 2020 23:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46498 * 109.46884 * 2 1 4 4 C 1.36346 * 125.63524 * 89.97905 * 3 2 1 5 5 C 1.34847 * 108.21932 * 180.02562 * 4 3 2 6 6 C 1.40895 * 107.41836 * 359.97438 * 5 4 3 7 7 C 1.50702 * 126.28970 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47063 * 90.03011 * 7 6 5 9 9 C 1.46900 * 110.99909 * 293.95076 * 8 7 6 10 10 C 1.46892 * 111.00062 * 169.99837 * 8 7 6 11 11 H 1.09002 * 109.47222 * 173.56136 * 10 8 7 12 12 C 1.52999 * 109.47564 * 53.55831 * 10 8 7 13 13 C 1.53007 * 109.47056 * 293.55784 * 10 8 7 14 14 C 1.50697 * 109.47309 * 296.24430 * 13 10 8 15 15 H 1.08004 * 119.99893 * 355.26722 * 14 13 10 16 16 C 1.37872 * 120.00058 * 175.26435 * 14 13 10 17 17 N 1.31512 * 120.00471 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 120.00061 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47076 * 90.00142 * 18 16 14 20 20 H 1.48499 * 109.47619 * 210.00086 * 18 16 14 21 21 H 1.48501 * 109.47086 * 330.00469 * 18 16 14 22 22 C 1.34845 * 107.41584 * 0.22860 * 6 5 4 23 23 H 1.08999 * 109.47288 * 60.00310 * 1 2 3 24 24 H 1.09011 * 109.46820 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47258 * 299.99462 * 1 2 3 26 26 H 1.09005 * 109.47223 * 240.00489 * 2 1 3 27 27 H 1.09002 * 109.47693 * 120.00001 * 2 1 3 28 28 H 1.07997 * 125.89143 * 359.97438 * 4 3 2 29 29 H 1.08003 * 126.29436 * 180.02562 * 5 4 3 30 30 H 1.08992 * 109.47119 * 330.02557 * 7 6 5 31 31 H 1.09003 * 109.46761 * 210.02222 * 7 6 5 32 32 H 1.09007 * 109.47079 * 302.25106 * 9 8 7 33 33 H 1.08999 * 109.47223 * 62.24614 * 9 8 7 34 34 H 1.08999 * 109.47255 * 182.24897 * 9 8 7 35 35 H 1.08994 * 109.47383 * 179.97438 * 12 10 8 36 36 H 1.08994 * 109.46827 * 300.00354 * 12 10 8 37 37 H 1.09002 * 109.46828 * 60.00295 * 12 10 8 38 38 H 1.08997 * 109.47008 * 56.24488 * 13 10 8 39 39 H 1.09002 * 109.47243 * 176.24524 * 13 10 8 40 40 H 0.96993 * 120.00985 * 179.97438 * 17 16 14 41 41 H 1.08001 * 125.89066 * 179.74697 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2826 2.1303 1.1081 5 6 2.7110 3.3435 0.7045 6 6 2.7118 3.3434 -0.7044 7 6 3.1160 4.4889 -1.5963 8 7 4.5534 4.4003 -1.8860 9 6 5.3494 4.6074 -0.6688 10 6 4.9387 5.3532 -2.9354 11 1 6.0226 5.3486 -3.0502 12 6 4.4732 6.7575 -2.5451 13 6 4.2840 4.9480 -4.2576 14 6 4.8127 3.6043 -4.6889 15 1 5.5977 3.1256 -4.1222 16 6 4.2942 2.9861 -5.8068 17 7 4.7559 1.8137 -6.1836 18 14 2.9360 3.8136 -6.7865 19 1 3.5370 4.6672 -7.8426 20 1 2.0780 2.7778 -7.4160 21 1 2.1131 4.6538 -5.8797 22 6 2.2789 2.1317 -1.1081 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8900 28 1 2.1678 1.8079 2.1325 29 1 3.0012 4.1643 1.3438 30 1 2.9040 5.4327 -1.0941 31 1 2.5538 4.4391 -2.5288 32 1 5.1062 5.5780 -0.2364 33 1 5.1227 3.8215 0.0517 34 1 6.4099 4.5763 -0.9186 35 1 4.7595 7.4646 -3.3236 36 1 3.3893 6.7621 -2.4302 37 1 4.9397 7.0461 -1.6032 38 1 3.2038 4.8878 -4.1247 39 1 4.5154 5.6914 -5.0205 40 1 4.3909 1.3785 -6.9699 41 1 2.1606 1.8106 -2.1324 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591032476.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:59 Heat of formation + Delta-G solvation = 34.276158 kcal Electronic energy + Delta-G solvation = -18893.110633 eV Core-core repulsion = 16194.294133 eV Total energy + Delta-G solvation = -2698.816500 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.00900 -39.25232 -35.33061 -34.68206 -32.73035 -30.78789 -29.79484 -29.38590 -27.44080 -25.66047 -24.22812 -23.49903 -21.01720 -20.79263 -19.84075 -18.75220 -17.86705 -16.69587 -16.37779 -15.78886 -15.49379 -15.30201 -15.16154 -14.65993 -14.27556 -14.20001 -14.04409 -13.92146 -13.39121 -13.12051 -13.05231 -12.91435 -12.78782 -12.63314 -12.53476 -12.35443 -12.10832 -11.95434 -11.77216 -11.56991 -11.32050 -11.02469 -10.64777 -9.29689 -8.89956 -8.71586 -8.14476 -6.12183 1.36811 1.38400 1.47961 1.49465 2.11980 2.21383 2.43408 3.18472 3.52500 3.86487 4.16167 4.19140 4.23729 4.31139 4.33787 4.42895 4.50267 4.52344 4.64295 4.69206 4.73087 4.78575 4.86608 4.91200 4.98616 5.07068 5.15829 5.16735 5.20121 5.23284 5.30337 5.39627 5.58903 5.69418 5.78675 6.20540 6.40599 6.45272 6.55908 6.64238 6.69621 6.94663 7.47310 9.03208 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.016597 B = 0.007538 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.627211 B = 3713.501067 C = 4840.853461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.094 3.906 3 N -0.449 5.449 4 C -0.012 4.012 5 C -0.210 4.210 6 C -0.168 4.168 7 C 0.136 3.864 8 N -0.537 5.537 9 C 0.036 3.964 10 C 0.096 3.904 11 H 0.059 0.941 12 C -0.175 4.175 13 C -0.006 4.006 14 C -0.481 4.481 15 H 0.031 0.969 16 C -0.001 4.001 17 N -0.959 5.959 18 Si 0.939 3.061 19 H -0.269 1.269 20 H -0.290 1.290 21 H -0.250 1.250 22 C -0.017 4.017 23 H 0.043 0.957 24 H 0.094 0.906 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.113 0.887 28 H 0.191 0.809 29 H 0.141 0.859 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.033 0.967 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.019 0.981 39 H 0.018 0.982 40 H 0.259 0.741 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.394 1.914 16.062 18.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.026 4.026 3 N -0.125 5.125 4 C -0.142 4.142 5 C -0.235 4.235 6 C -0.175 4.175 7 C 0.009 3.991 8 N -0.260 5.260 9 C -0.112 4.112 10 C -0.013 4.013 11 H 0.077 0.923 12 C -0.233 4.233 13 C -0.043 4.043 14 C -0.520 4.520 15 H 0.049 0.951 16 C -0.195 4.195 17 N -0.602 5.602 18 Si 0.764 3.236 19 H -0.195 1.195 20 H -0.216 1.216 21 H -0.174 1.174 22 C -0.148 4.148 23 H 0.063 0.937 24 H 0.113 0.887 25 H 0.084 0.916 26 H 0.099 0.901 27 H 0.131 0.869 28 H 0.208 0.792 29 H 0.159 0.841 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.038 0.962 39 H 0.037 0.963 40 H 0.068 0.932 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.443 0.945 15.763 17.907 hybrid contribution -0.371 0.633 -0.805 1.089 sum -8.814 1.578 14.958 17.433 Atomic orbital electron populations 1.22112 0.93547 1.03883 1.02302 1.22046 0.96129 0.79365 1.05102 1.44306 1.50513 1.12283 1.05415 1.22192 1.07521 0.92117 0.92338 1.20895 1.10333 0.98738 0.93511 1.19460 1.07724 0.95752 0.94594 1.20236 0.88437 0.94051 0.96414 1.61948 1.04071 1.51768 1.08238 1.22279 0.97141 0.99729 0.92040 1.21527 0.98742 0.89262 0.91741 0.92254 1.22404 1.01546 0.97467 1.01926 1.19665 0.96108 0.94964 0.93608 1.21232 1.18983 1.03059 1.08696 0.95060 1.25877 0.99472 0.95455 0.98743 1.70083 1.45547 1.17581 1.26974 0.85822 0.79991 0.78510 0.79253 1.19467 1.21573 1.17353 1.21566 1.08770 0.93000 0.91486 0.93742 0.88741 0.91611 0.90056 0.86924 0.79181 0.84104 0.93962 0.92809 0.94885 0.91656 0.92853 0.91629 0.92561 0.91760 0.96240 0.96335 0.93180 0.84480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 10.24 71.98 0.74 -1.93 16 2 C 0.09 1.87 6.81 86.38 0.59 2.46 16 3 N -0.45 -12.47 2.75 -524.48 -1.44 -13.91 16 4 C -0.01 -0.30 11.43 83.21 0.95 0.65 16 5 C -0.21 -6.10 9.56 22.14 0.21 -5.89 16 6 C -0.17 -6.00 4.97 -19.99 -0.10 -6.10 16 7 C 0.14 5.13 4.40 85.56 0.38 5.51 16 8 N -0.54 -21.75 4.38 -901.62 -3.95 -25.70 16 9 C 0.04 1.21 8.92 127.69 1.14 2.35 16 10 C 0.10 3.91 2.27 44.92 0.10 4.01 16 11 H 0.06 2.54 7.98 -2.39 -0.02 2.52 16 12 C -0.17 -5.53 8.45 71.98 0.61 -4.92 16 13 C -0.01 -0.29 3.46 29.85 0.10 -0.19 16 14 C -0.48 -28.60 9.36 25.60 0.24 -28.36 16 15 H 0.03 2.09 7.99 -2.91 -0.02 2.07 16 16 C 0.00 -0.06 5.47 84.65 0.46 0.40 16 17 N -0.96 -62.25 13.96 21.44 0.30 -61.95 16 18 Si 0.94 45.96 27.57 68.60 1.89 47.85 16 19 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 20 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 21 H -0.25 -11.41 6.41 99.48 0.64 -10.77 16 22 C -0.02 -0.62 11.35 83.21 0.94 0.33 16 23 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 25 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 27 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.19 3.17 8.06 -2.91 -0.02 3.14 16 29 H 0.14 3.56 8.06 -2.91 -0.02 3.53 16 30 H 0.04 1.42 6.81 -2.39 -0.02 1.41 16 31 H 0.05 2.27 6.04 -2.39 -0.01 2.26 16 32 H 0.03 0.95 6.89 -2.38 -0.02 0.94 16 33 H 0.06 2.17 6.47 -2.39 -0.02 2.15 16 34 H 0.05 1.77 8.00 -2.39 -0.02 1.76 16 35 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.06 1.74 6.55 -2.39 -0.02 1.73 16 37 H 0.06 1.78 6.84 -2.39 -0.02 1.76 16 38 H 0.02 0.95 4.95 -2.39 -0.01 0.93 16 39 H 0.02 0.87 7.81 -2.39 -0.02 0.85 16 40 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 41 H 0.14 5.49 8.06 -2.91 -0.02 5.47 16 Total: -1.00 -71.70 323.60 4.07 -67.62 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.91 Total: 17.77 kcal Atomic # 6 Polarization: -38.05 SS G_CDS: 6.36 Total: -31.68 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -5.09 Total: -101.56 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.89 Total: 47.85 kcal Total: -71.70 4.07 -67.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591032476.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.900 kcal (2) G-P(sol) polarization free energy of solvation -71.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds