Wall clock time and date at job start Sun Mar 29 2020 22:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46753 * 2 1 4 4 C 1.53001 * 109.46862 * 119.99416 * 2 1 3 5 5 C 1.53004 * 109.46543 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47371 * 299.99788 * 5 4 2 7 7 H 1.08997 * 109.47191 * 300.00482 * 6 5 4 8 8 N 1.46902 * 109.47197 * 179.97438 * 6 5 4 9 9 C 1.46906 * 110.99573 * 85.00442 * 8 6 5 10 10 C 1.52998 * 109.47020 * 179.97438 * 9 8 6 11 11 H 1.09003 * 109.46898 * 54.99835 * 10 9 8 12 12 C 1.47200 * 109.47099 * 295.00398 * 10 9 8 13 13 N 7.69905 * 153.94026 * 209.60902 * 2 1 3 14 14 C 1.52995 * 109.47327 * 174.99789 * 10 9 8 15 15 C 1.50700 * 109.47341 * 184.99922 * 14 10 9 16 16 H 1.07996 * 119.99792 * 0.02562 * 15 14 10 17 17 C 1.37873 * 119.99738 * 180.02562 * 15 14 10 18 18 N 1.31516 * 120.00626 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99918 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46863 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47487 * 119.99893 * 19 17 15 22 22 H 1.48502 * 109.47230 * 240.00594 * 19 17 15 23 23 C 1.53007 * 109.46638 * 60.00520 * 6 5 4 24 24 C 1.52998 * 109.47198 * 239.99746 * 2 1 3 25 25 H 1.08999 * 109.46753 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47063 * 300.00453 * 1 2 3 27 27 H 1.09000 * 109.46820 * 60.00390 * 1 2 3 28 28 H 1.08998 * 109.47389 * 299.99932 * 4 2 1 29 29 H 1.08999 * 109.46959 * 60.00711 * 4 2 1 30 30 H 1.09011 * 109.46914 * 180.02562 * 5 4 2 31 31 H 1.08999 * 109.47037 * 60.00606 * 5 4 2 32 32 H 1.00896 * 111.00219 * 208.96081 * 8 6 5 33 33 H 1.09002 * 109.46991 * 299.99841 * 9 8 6 34 34 H 1.09000 * 109.47202 * 60.00133 * 9 8 6 35 35 H 1.09002 * 109.47542 * 305.00684 * 14 10 9 36 36 H 1.09006 * 109.46874 * 65.00184 * 14 10 9 37 37 H 0.97002 * 120.00109 * 180.02562 * 18 17 15 38 38 H 1.08997 * 109.47360 * 60.00066 * 23 6 5 39 39 H 1.08995 * 109.46834 * 179.97438 * 23 6 5 40 40 H 1.08997 * 109.46865 * 60.00045 * 24 2 1 41 41 H 1.08997 * 109.46959 * 299.99886 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5701 -0.7205 1.2496 6 6 4.0806 -1.4416 0.0005 7 1 3.7176 -2.4693 0.0003 8 7 5.5496 -1.4404 0.0004 9 6 6.0769 -2.5634 0.7872 10 6 7.6063 -2.5293 0.7632 11 1 7.9534 -1.5555 1.1089 12 6 8.0808 -2.7597 -0.6110 13 7 8.4464 -2.9406 -1.6711 14 6 8.1553 -3.6222 1.6824 15 6 9.6564 -3.5104 1.7549 16 1 10.1676 -2.7369 1.2011 17 6 10.3770 -4.3956 2.5282 18 7 9.7545 -5.3379 3.2023 19 14 12.2377 -4.2567 2.6187 20 1 12.6909 -3.1221 1.7745 21 1 12.6487 -4.0221 4.0262 22 1 12.8526 -5.5156 2.1266 23 6 3.5706 -0.7203 -1.2489 24 6 2.0401 -0.7213 -1.2492 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6767 -0.2072 2.1393 29 1 1.6768 -1.7488 1.2493 30 1 3.9334 -1.2347 2.1395 31 1 3.9330 0.3073 1.2498 32 1 5.9112 -1.4574 -0.9414 33 1 5.7273 -2.4818 1.8164 34 1 5.7281 -3.5029 0.3583 35 1 7.7334 -3.5034 2.6804 36 1 7.8825 -4.6006 1.2867 37 1 10.2615 -5.9604 3.7466 38 1 3.9335 0.3075 -1.2487 39 1 3.9346 -1.2337 -2.1388 40 1 1.6768 -0.2075 -2.1391 41 1 1.6768 -1.7489 -1.2491 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591735407.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:48 Heat of formation + Delta-G solvation = -18.446860 kcal Electronic energy + Delta-G solvation = -18046.760347 eV Core-core repulsion = 15345.657605 eV Total energy + Delta-G solvation = -2701.102741 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.21740 -37.08471 -35.04521 -33.63477 -32.10616 -30.87549 -30.18596 -26.82243 -25.05908 -23.21473 -22.34753 -21.76390 -20.79613 -19.80015 -16.70591 -16.50111 -15.81981 -15.12420 -14.94267 -14.48904 -14.34224 -14.30147 -13.38711 -13.24566 -12.93286 -12.86717 -12.49707 -12.28039 -12.23965 -12.08798 -11.78738 -11.51196 -11.24533 -11.15019 -11.08834 -10.94652 -10.75202 -10.71902 -10.52609 -10.35147 -10.20664 -10.06477 -9.51762 -9.19861 -8.45508 -8.27990 -6.09158 -4.12152 3.28851 3.36981 3.41816 3.57896 3.63226 4.17539 4.42129 4.54450 4.58945 4.80394 4.82137 4.98978 5.10193 5.28896 5.31679 5.37932 5.41247 5.44811 5.49530 5.55171 5.66439 5.68330 5.75451 5.76512 5.90509 6.00296 6.03367 6.13046 6.18241 6.19013 6.25498 6.38257 6.45606 6.56602 7.19534 7.44231 7.49843 7.54419 7.86234 8.23888 8.41069 8.92739 9.53351 11.01767 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.041726 B = 0.003816 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.882216 B = 7335.484856 C = 7768.129048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 H 0.070 0.930 4 C -0.114 4.114 5 C -0.107 4.107 6 C 0.088 3.912 7 H 0.043 0.957 8 N -0.690 5.690 9 C 0.068 3.932 10 C 0.006 3.994 11 H 0.111 0.889 12 C 0.242 3.758 13 N -0.478 5.478 14 C 0.032 3.968 15 C -0.525 4.525 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.284 1.284 23 C -0.122 4.122 24 C -0.110 4.110 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.338 0.662 33 H 0.090 0.910 34 H 0.033 0.967 35 H 0.040 0.960 36 H 0.024 0.976 37 H 0.262 0.738 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.846 9.732 -3.676 20.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 H 0.088 0.912 4 C -0.152 4.152 5 C -0.145 4.145 6 C -0.022 4.022 7 H 0.061 0.939 8 N -0.321 5.321 9 C -0.062 4.062 10 C -0.016 4.016 11 H 0.128 0.872 12 C -0.074 4.074 13 N -0.155 5.155 14 C -0.007 4.007 15 C -0.563 4.563 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.210 1.210 23 C -0.160 4.160 24 C -0.148 4.148 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.156 0.844 33 H 0.109 0.891 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.042 0.958 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.207 9.759 -4.645 20.320 hybrid contribution 0.852 -0.796 -0.062 1.167 sum -16.356 8.964 -4.707 19.236 Atomic orbital electron populations 1.21839 0.95559 1.01674 1.01424 1.21158 0.95075 0.99793 0.95131 0.91182 1.21607 0.95894 1.00479 0.97254 1.21528 0.94033 1.01467 0.97497 1.21515 0.87568 0.97839 0.95293 0.93936 1.60599 1.06679 1.46154 1.18635 1.22116 0.93488 0.91174 0.99415 1.19338 0.93040 1.04555 0.84642 0.87153 1.29325 0.92134 0.91578 0.94396 1.81022 1.09871 1.10648 1.13971 1.19167 0.96165 0.91666 0.93661 1.21190 0.91561 1.15115 1.28471 0.92445 1.24958 0.98626 0.95115 0.95327 1.69950 1.35620 1.17492 1.29991 0.86537 0.85610 0.78099 0.77847 1.19667 1.20813 1.21019 1.21729 0.95591 1.01603 0.97075 1.21556 0.95108 1.00643 0.97534 0.92804 0.92781 0.92942 0.91950 0.92176 0.91663 0.91267 0.84415 0.89139 0.94849 0.94215 0.95791 0.92864 0.91063 0.92300 0.92068 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.19 37.16 0.34 -0.71 16 2 C -0.09 -0.76 2.72 -90.62 -0.25 -1.01 16 3 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.11 -1.01 5.20 -26.73 -0.14 -1.15 16 5 C -0.11 -1.13 5.42 -26.73 -0.15 -1.28 16 6 C 0.09 1.00 2.49 -67.71 -0.17 0.83 16 7 H 0.04 0.51 7.80 -51.93 -0.41 0.11 16 8 N -0.69 -9.30 6.30 -106.72 -0.67 -9.97 16 9 C 0.07 1.03 4.92 -3.82 -0.02 1.01 16 10 C 0.01 0.12 2.42 -93.41 -0.23 -0.11 16 11 H 0.11 1.98 8.14 -51.93 -0.42 1.56 16 12 C 0.24 4.96 12.98 -20.76 -0.27 4.69 16 13 N -0.48 -10.52 18.54 42.15 0.78 -9.74 16 14 C 0.03 0.75 4.42 -27.89 -0.12 0.62 16 15 C -0.53 -14.09 8.60 -34.44 -0.30 -14.39 16 16 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 19 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 C -0.12 -1.23 5.19 -26.70 -0.14 -1.36 16 24 C -0.11 -0.95 5.21 -26.71 -0.14 -1.09 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.73 7.45 -51.92 -0.39 0.34 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.34 4.73 7.42 -39.29 -0.29 4.44 16 33 H 0.09 1.30 7.44 -51.93 -0.39 0.91 16 34 H 0.03 0.52 8.05 -51.93 -0.42 0.10 16 35 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 331.25 15.07 4.99 4.99 Total: -1.00 -28.87 331.25 -8.19 -37.06 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -7.34 Total: -1.51 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -1.67 Total: -12.33 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: 0.84 Total: -44.63 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.87 -8.19 -37.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591735407.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.617 kcal (2) G-P(sol) polarization free energy of solvation -28.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds