Wall clock time and date at job start Sun Mar 29 2020 22:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47301 * 2 1 4 4 C 1.53000 * 109.47489 * 120.00060 * 2 1 3 5 5 C 1.52994 * 109.47345 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47003 * 299.99863 * 5 4 2 7 7 H 1.08995 * 109.47344 * 300.00354 * 6 5 4 8 8 N 1.46899 * 109.47382 * 180.02562 * 6 5 4 9 9 C 1.46895 * 110.99973 * 84.99795 * 8 6 5 10 10 C 1.52998 * 109.47209 * 180.02562 * 9 8 6 11 11 H 1.09001 * 109.47284 * 305.00264 * 10 9 8 12 12 C 1.47204 * 109.47047 * 65.00295 * 10 9 8 13 13 N 7.20418 * 163.74765 * 100.98716 * 2 1 3 14 14 C 1.53007 * 109.47385 * 185.00264 * 10 9 8 15 15 C 1.50697 * 109.46894 * 175.00224 * 14 10 9 16 16 H 1.08002 * 120.00599 * 0.02562 * 15 14 10 17 17 C 1.37880 * 119.99675 * 179.97438 * 15 14 10 18 18 N 1.31517 * 120.00210 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00019 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.46845 * 269.99914 * 19 17 15 21 21 H 1.48503 * 109.47399 * 29.99403 * 19 17 15 22 22 H 1.48498 * 109.47295 * 150.00010 * 19 17 15 23 23 C 1.53006 * 109.46973 * 60.00219 * 6 5 4 24 24 C 1.52998 * 109.46778 * 299.99590 * 23 6 5 25 25 H 1.09005 * 109.46789 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46981 * 299.99701 * 1 2 3 27 27 H 1.08996 * 109.47299 * 59.99596 * 1 2 3 28 28 H 1.09002 * 109.46774 * 300.00354 * 4 2 1 29 29 H 1.09003 * 109.46898 * 59.99693 * 4 2 1 30 30 H 1.08996 * 109.47155 * 180.02562 * 5 4 2 31 31 H 1.08998 * 109.47514 * 59.99455 * 5 4 2 32 32 H 1.00901 * 111.00397 * 208.95534 * 8 6 5 33 33 H 1.08998 * 109.47088 * 60.00601 * 9 8 6 34 34 H 1.08999 * 109.47502 * 300.00466 * 9 8 6 35 35 H 1.08995 * 109.46729 * 55.00217 * 14 10 9 36 36 H 1.09007 * 109.46460 * 295.00072 * 14 10 9 37 37 H 0.96998 * 119.99640 * 180.02562 * 18 17 15 38 38 H 1.08990 * 109.47337 * 60.00184 * 23 6 5 39 39 H 1.09008 * 109.46596 * 180.02562 * 23 6 5 40 40 H 1.09001 * 109.46824 * 180.02562 * 24 23 6 41 41 H 1.08995 * 109.47628 * 299.99920 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5701 -0.7207 1.2495 6 6 4.0805 -1.4416 0.0002 7 1 3.7176 -2.4693 0.0000 8 7 5.5495 -1.4416 0.0007 9 6 6.0757 -2.5652 0.7872 10 6 7.6051 -2.5314 0.7649 11 1 7.9533 -2.5231 -0.2680 12 6 8.0792 -1.3192 1.4523 13 7 8.4463 -0.3843 1.9793 14 6 8.1531 -3.7694 1.4779 15 6 9.6543 -3.7995 1.3496 16 1 10.1664 -3.0141 0.8135 17 6 10.3741 -4.8293 1.9175 18 7 11.6842 -4.8560 1.8051 19 14 9.4885 -6.1873 2.8452 20 1 9.3694 -5.8122 4.2772 21 1 8.1330 -6.3779 2.2692 22 1 10.2588 -7.4514 2.7270 23 6 3.5705 -0.7203 -1.2490 24 6 2.0405 -0.7209 -1.2493 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.6767 -0.2074 2.1392 29 1 1.6767 -1.7489 1.2492 30 1 3.9334 -1.2349 2.1392 31 1 3.9331 0.3071 1.2496 32 1 5.9115 -1.4585 -0.9410 33 1 5.7264 -3.5042 0.3580 34 1 5.7258 -2.4838 1.8163 35 1 7.7315 -4.6662 1.0242 36 1 7.8792 -3.7323 2.5323 37 1 12.1905 -5.5806 2.2043 38 1 3.9335 0.3074 -1.2488 39 1 3.9339 -1.2342 -2.1390 40 1 1.6771 -0.2074 -2.1395 41 1 1.6775 -1.7486 -1.2495 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591735412.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:49 Heat of formation + Delta-G solvation = -13.601289 kcal Electronic energy + Delta-G solvation = -18114.238229 eV Core-core repulsion = 15413.345607 eV Total energy + Delta-G solvation = -2700.892622 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.26733 -37.08289 -35.08853 -33.60182 -32.15277 -30.93045 -30.41125 -27.20826 -25.17782 -23.23338 -22.31102 -21.51605 -20.82103 -19.84052 -17.08987 -16.83955 -15.62851 -15.21507 -14.82425 -14.44187 -14.38384 -14.15238 -13.78291 -13.37155 -13.13321 -12.65334 -12.50728 -12.43294 -12.32647 -12.10324 -11.85227 -11.58026 -11.38520 -11.29499 -11.20534 -10.99239 -10.81289 -10.76597 -10.44255 -10.27972 -10.12286 -9.94874 -9.70648 -9.32250 -8.61573 -8.32577 -6.10461 -4.11044 3.26977 3.34424 3.34837 3.73535 3.81973 4.11360 4.38368 4.49722 4.54118 4.75157 4.83284 4.94634 5.04365 5.24488 5.26797 5.32556 5.35616 5.40343 5.44339 5.47484 5.62336 5.64209 5.66567 5.70286 5.85502 5.89941 5.96913 6.00123 6.09942 6.14037 6.20551 6.28508 6.30804 6.37710 6.95031 7.10185 7.13037 7.48819 7.64179 8.41095 8.57502 8.93362 9.49423 11.02698 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.035825 B = 0.004078 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.398637 B = 6864.284669 C = 7131.017037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 H 0.070 0.930 4 C -0.114 4.114 5 C -0.108 4.108 6 C 0.090 3.910 7 H 0.043 0.957 8 N -0.691 5.691 9 C 0.065 3.935 10 C 0.019 3.981 11 H 0.104 0.896 12 C 0.253 3.747 13 N -0.471 5.471 14 C -0.005 4.005 15 C -0.528 4.528 16 H 0.074 0.926 17 C 0.071 3.929 18 N -0.897 5.897 19 Si 0.878 3.122 20 H -0.277 1.277 21 H -0.263 1.263 22 H -0.287 1.287 23 C -0.121 4.121 24 C -0.110 4.110 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.342 0.658 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.036 0.964 36 H 0.021 0.979 37 H 0.264 0.736 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.550 4.906 -6.028 23.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 H 0.088 0.912 4 C -0.152 4.152 5 C -0.147 4.147 6 C -0.020 4.020 7 H 0.061 0.939 8 N -0.322 5.322 9 C -0.065 4.065 10 C -0.003 4.003 11 H 0.122 0.878 12 C -0.064 4.064 13 N -0.148 5.148 14 C -0.044 4.044 15 C -0.565 4.565 16 H 0.092 0.908 17 C -0.131 4.131 18 N -0.535 5.535 19 Si 0.705 3.295 20 H -0.202 1.202 21 H -0.188 1.188 22 H -0.213 1.213 23 C -0.159 4.159 24 C -0.148 4.148 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.161 0.839 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.054 0.946 36 H 0.039 0.961 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.772 6.661 -4.673 23.243 hybrid contribution -0.487 -1.919 -0.231 1.994 sum -22.259 4.741 -4.904 23.281 Atomic orbital electron populations 1.21836 0.95522 1.01662 1.01461 1.21159 0.95103 0.99828 0.95115 0.91201 1.21600 0.95797 1.00440 0.97327 1.21529 0.94087 1.01524 0.97526 1.21494 0.87463 0.97787 0.95256 0.93858 1.60491 1.06734 1.46151 1.18812 1.22128 0.93531 0.91707 0.99177 1.18962 0.92794 0.88700 0.99834 0.87811 1.28624 0.91735 0.93182 0.92873 1.80918 1.10194 1.13204 1.10481 1.19637 0.97807 0.91265 0.95681 1.21038 0.89171 1.10283 1.36054 0.90774 1.24998 0.94700 0.97840 0.95610 1.69908 1.05772 1.32881 1.44982 0.86812 0.80247 0.81707 0.80735 1.20231 1.18773 1.21262 1.21713 0.95551 1.01647 0.96985 1.21547 0.95162 1.00620 0.97502 0.92800 0.92818 0.92879 0.92043 0.92180 0.92018 0.91371 0.83907 0.93416 0.90598 0.94567 0.96119 0.92567 0.91095 0.92023 0.92012 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.20 37.16 0.34 -0.68 16 2 C -0.09 -0.75 2.72 -90.62 -0.25 -1.00 16 3 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 4 C -0.11 -1.01 5.20 -26.73 -0.14 -1.15 16 5 C -0.11 -1.18 5.43 -26.73 -0.15 -1.33 16 6 C 0.09 0.95 2.49 -67.71 -0.17 0.78 16 7 H 0.04 0.46 7.80 -51.93 -0.40 0.06 16 8 N -0.69 -8.62 6.01 -106.73 -0.64 -9.26 16 9 C 0.06 0.90 4.85 -3.83 -0.02 0.88 16 10 C 0.02 0.34 2.35 -93.40 -0.22 0.12 16 11 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 12 C 0.25 5.29 13.66 -20.82 -0.28 5.01 16 13 N -0.47 -10.86 18.53 42.09 0.78 -10.09 16 14 C 0.00 -0.11 3.49 -27.88 -0.10 -0.20 16 15 C -0.53 -14.29 9.15 -34.44 -0.32 -14.61 16 16 H 0.07 2.21 7.84 -52.49 -0.41 1.79 16 17 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 19 Si 0.88 20.74 27.47 -169.99 -4.67 16.07 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.26 -5.74 6.54 56.52 0.37 -5.37 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 C -0.12 -1.09 5.20 -26.73 -0.14 -1.23 16 24 C -0.11 -0.87 5.20 -26.73 -0.14 -1.01 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.74 7.45 -51.93 -0.39 0.35 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.34 3.86 8.35 -39.29 -0.33 3.54 16 33 H 0.05 0.60 8.05 -51.93 -0.42 0.18 16 34 H 0.08 1.10 7.43 -51.93 -0.39 0.71 16 35 H 0.04 0.73 7.20 -51.93 -0.37 0.36 16 36 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.51 8.12 -51.92 -0.42 0.09 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 328.81 15.07 4.96 4.96 Total: -1.00 -30.83 328.81 -7.81 -38.64 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -7.34 Total: -1.37 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -1.67 Total: -12.51 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 0.91 Total: -45.79 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.67 Total: 16.07 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.83 -7.81 -38.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591735412.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.038 kcal (2) G-P(sol) polarization free energy of solvation -30.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds