Wall clock time and date at job start Sun Mar 29 2020 22:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48503 * 109.47029 * 239.99981 * 3 2 1 5 5 H 1.48497 * 109.46929 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47221 * 120.00045 * 3 2 1 7 7 C 1.37884 * 119.99679 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99917 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00141 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47269 * 179.97438 * 9 7 2 11 11 C 1.46959 * 111.00337 * 169.99881 * 10 9 7 12 12 C 1.53045 * 109.36667 * 183.19166 * 11 10 9 13 13 N 1.46964 * 109.36452 * 301.59992 * 12 11 10 14 14 C 1.46903 * 110.99959 * 183.18700 * 13 12 11 15 15 C 1.53000 * 109.46744 * 160.41903 * 14 13 12 16 16 C 1.54631 * 111.03804 * 287.36876 * 15 14 13 17 17 C 1.51170 * 104.69376 * 217.36589 * 16 15 14 18 18 C 1.30528 * 111.12026 * 16.38317 * 17 16 15 19 19 C 1.51104 * 111.10339 * 0.03136 * 18 17 16 20 20 C 1.46960 * 110.87683 * 59.32005 * 13 12 11 21 21 C 1.46956 * 111.00267 * 293.80426 * 10 9 7 22 22 H 0.97003 * 120.00036 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46917 * 59.99838 * 9 7 2 24 24 H 1.09003 * 109.47404 * 300.00261 * 9 7 2 25 25 H 1.08999 * 109.48693 * 303.15864 * 11 10 9 26 26 H 1.09000 * 109.48789 * 63.22340 * 11 10 9 27 27 H 1.09003 * 109.49242 * 61.56292 * 12 11 10 28 28 H 1.09002 * 109.49251 * 181.63478 * 12 11 10 29 29 H 1.08998 * 109.47225 * 280.41873 * 14 13 12 30 30 H 1.08999 * 109.46775 * 40.42186 * 14 13 12 31 31 H 1.08997 * 110.91523 * 51.33757 * 15 14 13 32 32 H 1.08998 * 110.38979 * 336.14626 * 16 15 14 33 33 H 1.08991 * 110.38860 * 98.52574 * 16 15 14 34 34 H 1.07998 * 124.42978 * 196.40803 * 17 16 15 35 35 H 1.07995 * 124.44856 * 180.02562 * 18 17 16 36 36 H 1.09004 * 110.38710 * 224.75286 * 19 18 17 37 37 H 1.09005 * 110.47976 * 102.42733 * 19 18 17 38 38 H 1.09004 * 109.48339 * 180.70896 * 20 13 12 39 39 H 1.08998 * 109.48613 * 60.64948 * 20 13 12 40 40 H 1.08998 * 109.48518 * 296.77353 * 21 10 9 41 41 H 1.08996 * 109.48793 * 56.81789 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0017 10 7 2.2055 -3.6158 0.0015 11 6 1.5209 -4.8940 0.2408 12 6 2.5564 -6.0187 0.3122 13 7 3.3186 -6.0598 -0.9436 14 6 4.2732 -7.1764 -0.9438 15 6 4.6842 -7.4957 -2.3826 16 6 3.5330 -8.1887 -3.1479 17 6 4.2173 -9.2121 -4.0251 18 6 5.4413 -9.4296 -3.6272 19 6 5.7777 -8.5885 -2.4178 20 6 4.0031 -4.7816 -1.1829 21 6 2.9677 -3.6569 -1.2543 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5575 -0.8880 24 1 0.6246 -2.5563 0.8919 25 1 0.9741 -4.8428 1.1823 26 1 0.8248 -5.0918 -0.5742 27 1 3.2363 -5.8349 1.1442 28 1 2.0486 -6.9717 0.4608 29 1 5.1556 -6.9001 -0.3667 30 1 3.8062 -8.0536 -0.4961 31 1 5.0134 -6.5958 -2.9020 32 1 2.8547 -8.6798 -2.4502 33 1 2.9929 -7.4649 -3.7581 34 1 3.7541 -9.6991 -4.8705 35 1 6.1238 -10.1201 -4.1001 36 1 6.7629 -8.1362 -2.5320 37 1 5.7407 -9.1923 -1.5110 38 1 4.5501 -4.8327 -2.1244 39 1 4.6993 -4.5838 -0.3679 40 1 2.2879 -3.8407 -2.0863 41 1 3.4751 -2.7038 -1.4030 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595392355.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:33 Heat of formation + Delta-G solvation = 22.666973 kcal Electronic energy + Delta-G solvation = -18542.178745 eV Core-core repulsion = 15842.858833 eV Total energy + Delta-G solvation = -2699.319912 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.36079 -38.05524 -34.96122 -32.51628 -30.58421 -30.21949 -28.21416 -27.62327 -25.33857 -23.26974 -22.98712 -21.33002 -19.87463 -19.22549 -18.72783 -16.33074 -16.21892 -15.79854 -15.12328 -14.55541 -14.48930 -14.17594 -13.81822 -13.29259 -13.13975 -12.72720 -12.50931 -12.20498 -12.04539 -11.81121 -11.37260 -11.25804 -11.17448 -11.13867 -10.82634 -10.80952 -10.66622 -10.50728 -10.29233 -10.20810 -9.66470 -9.16380 -8.96939 -8.41640 -8.06434 -7.19020 -6.00676 -4.02130 2.15960 3.34585 3.38516 3.41430 4.04133 4.43966 4.60552 4.64970 4.86480 4.98886 5.20863 5.26804 5.34634 5.36700 5.44654 5.59425 5.62459 5.66494 5.74196 5.75253 5.84834 5.92774 5.94561 5.96653 6.04454 6.12121 6.22993 6.35103 6.43231 6.47855 6.64171 6.72915 6.80125 7.23797 7.31534 7.38941 7.42708 7.82184 8.12131 8.24312 8.58366 9.05227 9.61935 11.10211 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.040947 B = 0.004115 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.651739 B = 6802.808648 C = 7031.418640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.508 4.508 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.539 5.539 11 C 0.057 3.943 12 C 0.062 3.938 13 N -0.538 5.538 14 C 0.065 3.935 15 C -0.086 4.086 16 C -0.085 4.085 17 C -0.165 4.165 18 C -0.176 4.176 19 C -0.096 4.096 20 C 0.058 3.942 21 C 0.068 3.932 22 H 0.262 0.738 23 H -0.009 1.009 24 H 0.029 0.971 25 H 0.070 0.930 26 H 0.030 0.970 27 H 0.037 0.963 28 H 0.068 0.932 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.037 0.963 40 H 0.028 0.972 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.880 -17.198 -4.587 19.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.264 5.264 11 C -0.072 4.072 12 C -0.066 4.066 13 N -0.262 5.262 14 C -0.063 4.063 15 C -0.105 4.105 16 C -0.122 4.122 17 C -0.183 4.183 18 C -0.194 4.194 19 C -0.134 4.134 20 C -0.070 4.070 21 C -0.061 4.061 22 H 0.071 0.929 23 H 0.009 0.991 24 H 0.047 0.953 25 H 0.089 0.911 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.055 0.945 40 H 0.046 0.954 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.703 -17.050 -4.564 19.679 hybrid contribution 0.363 0.866 -0.065 0.942 sum 9.067 -16.183 -4.629 19.119 Atomic orbital electron populations 1.69953 1.06065 1.26853 1.50987 1.24991 0.94859 0.99285 0.95469 0.86563 0.79438 0.82788 0.78626 1.20269 1.21363 1.20202 1.21124 0.93406 0.90003 1.50102 0.92001 1.19690 0.90054 0.87307 0.96074 1.62272 1.28173 1.02748 1.33216 1.22056 0.94775 0.90025 1.00377 1.22157 0.96051 0.98427 0.89990 1.62127 1.25980 1.03338 1.34805 1.22088 0.94452 0.94367 0.95392 1.22011 0.94819 0.97709 0.95925 1.21313 0.97577 0.96143 0.97194 1.23448 0.96313 0.99249 0.99248 1.23224 0.97356 1.00711 0.98087 1.21399 0.98983 0.96119 0.96884 1.22272 0.96052 0.88684 1.00002 1.21979 0.95465 0.97410 0.91244 0.92884 0.99095 0.95275 0.91132 0.95183 0.94461 0.91344 0.94743 0.91214 0.90154 0.90695 0.90962 0.86316 0.86341 0.91458 0.90866 0.91236 0.94470 0.95378 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.51 -14.40 8.47 -34.44 -0.29 -14.69 16 8 H 0.06 1.73 7.13 -52.49 -0.37 1.36 16 9 C 0.19 5.15 4.72 -4.98 -0.02 5.13 16 10 N -0.54 -11.91 4.70 -235.92 -1.11 -13.02 16 11 C 0.06 1.06 5.61 -3.77 -0.02 1.04 16 12 C 0.06 0.95 5.57 -3.77 -0.02 0.93 16 13 N -0.54 -7.94 4.58 -234.46 -1.07 -9.02 16 14 C 0.07 0.78 4.31 -3.82 -0.02 0.76 16 15 C -0.09 -0.94 3.21 -88.90 -0.29 -1.23 16 16 C -0.09 -0.94 6.33 -26.80 -0.17 -1.11 16 17 C -0.16 -1.61 10.78 -35.66 -0.38 -2.00 16 18 C -0.18 -1.63 10.78 -35.70 -0.38 -2.02 16 19 C -0.10 -0.90 6.38 -26.82 -0.17 -1.08 16 20 C 0.06 0.93 5.43 -3.77 -0.02 0.91 16 21 C 0.07 1.36 5.43 -3.77 -0.02 1.34 16 22 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 23 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 24 H 0.03 0.82 8.03 -51.93 -0.42 0.41 16 25 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.90 8.00 -51.93 -0.42 0.49 16 29 H 0.03 0.41 8.00 -51.93 -0.42 0.00 16 30 H 0.07 0.77 7.63 -51.93 -0.40 0.38 16 31 H 0.08 0.96 6.76 -51.93 -0.35 0.61 16 32 H 0.07 0.84 7.75 -51.93 -0.40 0.43 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.65 7.89 -51.93 -0.41 0.24 16 38 H 0.07 1.00 6.72 -51.93 -0.35 0.65 16 39 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 1.81 6.79 -51.93 -0.35 1.46 16 LS Contribution 320.05 15.07 4.82 4.82 Total: -1.00 -29.70 320.05 -10.79 -40.49 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -7.24 Total: -3.24 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -1.91 Total: -10.53 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: -1.45 Total: -48.28 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.70 -10.79 -40.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595392355.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.159 kcal (2) G-P(sol) polarization free energy of solvation -29.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds