Wall clock time and date at job start Sun Mar 29 2020 22:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28713 * 125.86973 * 2 1 4 4 N 1.28639 * 110.18145 * 179.81674 * 3 2 1 5 5 C 1.33767 * 108.88014 * 0.44386 * 4 3 2 6 6 C 1.35316 * 125.86982 * 180.29861 * 2 1 3 7 7 C 1.50701 * 126.91112 * 0.03125 * 6 2 1 8 8 N 1.46897 * 109.46770 * 274.99608 * 7 6 2 9 9 C 1.46842 * 111.00539 * 66.04826 * 8 7 6 10 10 C 1.53034 * 109.52706 * 185.83948 * 9 8 7 11 11 C 1.53113 * 109.27684 * 300.81640 * 10 9 8 12 12 C 1.53123 * 109.16017 * 57.65464 * 11 10 9 13 13 H 1.08999 * 109.50262 * 62.28748 * 12 11 10 14 14 C 1.50700 * 109.50343 * 182.36508 * 12 11 10 15 15 H 1.08000 * 120.00606 * 120.00112 * 14 12 11 16 16 C 1.37882 * 120.00195 * 299.99860 * 14 12 11 17 17 N 1.31522 * 119.99507 * 0.02562 * 16 14 12 18 18 Si 1.86794 * 120.00305 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46774 * 90.00232 * 18 16 14 20 20 H 1.48501 * 109.47424 * 210.00179 * 18 16 14 21 21 H 1.48496 * 109.47416 * 330.00467 * 18 16 14 22 22 C 1.46849 * 110.99791 * 190.25583 * 8 7 6 23 23 H 1.09002 * 109.47391 * 269.69467 * 1 2 3 24 24 H 1.09001 * 109.46813 * 149.69524 * 1 2 3 25 25 H 1.09004 * 109.47041 * 29.69651 * 1 2 3 26 26 H 1.08006 * 126.75105 * 179.75410 * 5 4 3 27 27 H 1.09002 * 109.47055 * 34.99009 * 7 6 2 28 28 H 1.08999 * 109.47072 * 154.99601 * 7 6 2 29 29 H 1.09010 * 109.45965 * 305.85552 * 9 8 7 30 30 H 1.08998 * 109.46632 * 65.81832 * 9 8 7 31 31 H 1.09005 * 109.50556 * 60.76005 * 10 9 8 32 32 H 1.09001 * 109.50630 * 180.87521 * 10 9 8 33 33 H 1.09006 * 109.52431 * 177.55969 * 11 10 9 34 34 H 1.09002 * 109.52814 * 297.68755 * 11 10 9 35 35 H 0.97000 * 119.99434 * 179.97438 * 17 16 14 36 36 H 1.08996 * 109.46384 * 294.17725 * 22 8 7 37 37 H 1.08998 * 109.46333 * 54.14178 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2192 1.0430 0.0000 4 7 3.4576 0.6952 0.0039 5 6 3.5322 -0.6404 -0.0032 6 6 2.2579 -1.0965 -0.0057 7 6 1.8118 -2.5360 -0.0139 8 7 1.5510 -2.9755 1.3633 9 6 0.4053 -2.2580 1.9369 10 6 0.2537 -2.6331 3.4127 11 6 0.0438 -4.1452 3.5310 12 6 1.2275 -4.8690 2.8833 13 1 2.1439 -4.6183 3.4176 14 6 1.0011 -6.3577 2.9438 15 1 0.9530 -6.9342 2.0318 16 6 0.8553 -6.9839 4.1635 17 7 0.9134 -6.2819 5.2742 18 14 0.5739 -8.8290 4.2385 19 1 1.8826 -9.5265 4.3166 20 1 -0.2349 -9.1581 5.4397 21 1 -0.1496 -9.2694 3.0188 22 6 1.3509 -4.4291 1.4228 23 1 -0.3634 -0.0055 1.0276 24 1 -0.3633 -0.8873 -0.5186 25 1 -0.3633 0.8927 -0.5091 26 1 4.4322 -1.2374 -0.0061 27 1 0.9003 -2.6305 -0.6041 28 1 2.5940 -3.1563 -0.4513 29 1 0.5692 -1.1838 1.8501 30 1 -0.5015 -2.5316 1.3976 31 1 1.1547 -2.3472 3.9554 32 1 -0.6062 -2.1123 3.8341 33 1 -0.0215 -4.4227 4.5831 34 1 -0.8785 -4.4259 3.0224 35 1 0.8105 -6.7224 6.1322 36 1 0.4397 -4.6925 0.8859 37 1 2.2016 -4.9319 0.9627 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595623910.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:23 Heat of formation + Delta-G solvation = 80.307147 kcal Electronic energy + Delta-G solvation = -18787.666602 eV Core-core repulsion = 15987.305812 eV Total energy + Delta-G solvation = -2800.360790 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.25431 -39.85687 -36.15749 -35.32352 -33.97943 -32.02679 -31.53802 -28.99351 -27.26199 -26.87186 -23.91782 -23.62461 -23.07915 -21.40975 -20.37760 -18.51031 -18.12880 -17.86501 -16.73262 -16.12435 -15.94993 -15.78245 -15.11422 -14.87279 -14.57384 -14.28711 -14.17731 -13.85985 -13.73309 -13.36865 -12.99548 -12.83099 -12.68480 -12.49779 -12.35247 -11.89642 -11.79581 -11.71803 -11.37950 -11.08918 -10.87486 -10.64817 -10.36360 -10.16523 -9.16604 -8.05810 -6.19758 0.57610 1.43703 1.45002 1.49697 1.54113 1.58825 2.44998 3.09433 3.22211 3.44575 3.64571 3.88609 4.05172 4.11962 4.22300 4.24494 4.40255 4.44268 4.59071 4.62864 4.66581 4.74532 4.86299 4.89663 4.97431 5.06090 5.19003 5.25646 5.37238 5.52355 5.63667 5.66123 5.94880 6.12517 6.22300 6.25471 6.45854 6.94323 7.48830 7.49923 8.98765 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.044639 B = 0.005050 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.100676 B = 5543.203797 C = 5734.422560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.283 5.283 3 N -0.117 5.117 4 N -0.307 5.307 5 C -0.047 4.047 6 C 0.001 3.999 7 C 0.130 3.870 8 N -0.548 5.548 9 C 0.061 3.939 10 C -0.113 4.113 11 C -0.103 4.103 12 C 0.050 3.950 13 H -0.008 1.008 14 C -0.531 4.531 15 H 0.057 0.943 16 C 0.013 3.987 17 N -0.918 5.918 18 Si 0.952 3.048 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.265 1.265 22 C 0.084 3.916 23 H 0.103 0.897 24 H 0.118 0.882 25 H 0.120 0.880 26 H 0.206 0.794 27 H 0.067 0.933 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.039 0.961 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.030 0.970 35 H 0.258 0.742 36 H 0.029 0.971 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.589 8.263 -11.505 14.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.078 5.078 3 N -0.096 5.096 4 N -0.172 5.172 5 C -0.205 4.205 6 C -0.132 4.132 7 C 0.001 3.999 8 N -0.274 5.274 9 C -0.067 4.067 10 C -0.150 4.150 11 C -0.141 4.141 12 C 0.031 3.969 13 H 0.011 0.989 14 C -0.570 4.570 15 H 0.075 0.925 16 C -0.185 4.185 17 N -0.558 5.558 18 Si 0.778 3.222 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.190 1.190 22 C -0.043 4.043 23 H 0.121 0.879 24 H 0.136 0.864 25 H 0.139 0.861 26 H 0.223 0.777 27 H 0.085 0.915 28 H 0.135 0.865 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.048 0.952 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.197 9.933 -11.042 15.193 hybrid contribution -0.775 -2.331 0.260 2.470 sum -3.972 7.602 -10.782 13.777 Atomic orbital electron populations 1.22831 0.70983 1.07743 1.06306 1.47504 1.10419 1.04046 1.45792 1.78172 0.96902 1.12804 1.21744 1.75005 1.10252 1.13922 1.18031 1.23769 0.98584 0.91253 1.06933 1.22289 0.91203 0.91850 1.07899 1.20578 1.02389 0.86979 0.89960 1.61890 1.41029 1.06097 1.18356 1.22295 0.91529 0.97630 0.95214 1.21585 1.00317 0.97082 0.96062 1.21453 0.97841 0.92909 1.01941 1.18603 0.93662 0.93369 0.91219 0.98942 1.21537 1.49042 0.93959 0.92456 0.92481 1.25716 0.95149 1.02120 0.95561 1.70051 1.51149 1.36762 0.97823 0.85644 0.78069 0.80839 0.77611 1.20402 1.21326 1.18954 1.21989 0.99106 0.85031 0.98143 0.87900 0.86382 0.86148 0.77677 0.91537 0.86508 0.90874 0.93550 0.94243 0.91285 0.92780 0.95144 0.93240 0.95244 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.85 9.56 127.77 1.22 2.07 16 2 N -0.28 -6.69 3.36 -355.72 -1.20 -7.88 16 3 N -0.12 -3.49 13.16 37.02 0.49 -3.00 16 4 N -0.31 -9.81 12.41 -58.26 -0.72 -10.53 16 5 C -0.05 -1.27 11.99 83.73 1.00 -0.27 16 6 C 0.00 0.02 5.78 41.35 0.24 0.26 16 7 C 0.13 2.96 5.22 85.56 0.45 3.40 16 8 N -0.55 -17.00 4.65 -900.95 -4.19 -21.19 16 9 C 0.06 1.75 4.34 86.33 0.37 2.13 16 10 C -0.11 -4.09 6.09 30.64 0.19 -3.90 16 11 C -0.10 -4.68 5.02 30.67 0.15 -4.52 16 12 C 0.05 2.41 2.26 -11.49 -0.03 2.39 16 13 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 14 C -0.53 -27.99 8.57 25.60 0.22 -27.77 16 15 H 0.06 2.90 7.74 -2.91 -0.02 2.87 16 16 C 0.01 0.71 5.30 84.65 0.45 1.16 16 17 N -0.92 -52.54 11.35 21.45 0.24 -52.30 16 18 Si 0.95 42.42 29.54 68.60 2.03 44.45 16 19 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 22 C 0.08 3.11 4.68 86.32 0.40 3.51 16 23 H 0.10 1.37 6.40 -2.39 -0.02 1.35 16 24 H 0.12 1.16 7.22 -2.39 -0.02 1.14 16 25 H 0.12 1.20 8.14 -2.38 -0.02 1.18 16 26 H 0.21 4.51 8.06 -2.91 -0.02 4.49 16 27 H 0.07 1.22 7.30 -2.39 -0.02 1.20 16 28 H 0.12 2.36 7.98 -2.39 -0.02 2.34 16 29 H 0.07 1.88 4.13 -2.38 -0.01 1.87 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.05 2.86 6.15 -2.38 -0.01 2.84 16 34 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 36 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.07 2.43 8.01 -2.39 -0.02 2.41 16 Total: -1.00 -66.60 292.92 2.38 -64.22 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: 1.06 Total: 7.77 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: 4.67 Total: -21.54 kcal Atomic # 7 Polarization: -89.52 SS G_CDS: -5.37 Total: -94.90 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -66.60 2.38 -64.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623910.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.524 kcal (2) G-P(sol) polarization free energy of solvation -66.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds