Wall clock time and date at job start Sun Mar 29 2020 22:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28714 * 125.86825 * 2 1 4 4 N 1.28631 * 110.17934 * 180.24104 * 3 2 1 5 5 C 1.33778 * 108.88451 * 359.75324 * 4 3 2 6 6 C 1.35312 * 125.86709 * 179.82500 * 2 1 3 7 7 C 1.50695 * 126.91376 * 0.03709 * 6 2 1 8 8 N 1.46903 * 109.47089 * 274.70605 * 7 6 2 9 9 C 1.46846 * 110.99717 * 66.04674 * 8 7 6 10 10 C 1.53036 * 109.52384 * 174.15896 * 9 8 7 11 11 C 1.53123 * 109.27788 * 59.18000 * 10 9 8 12 12 C 1.53124 * 109.15980 * 302.34618 * 11 10 9 13 13 H 1.08992 * 109.53604 * 297.69218 * 12 11 10 14 14 C 1.50700 * 109.50413 * 177.59292 * 12 11 10 15 15 H 1.07992 * 120.00361 * 240.20270 * 14 12 11 16 16 C 1.37879 * 119.99720 * 60.19389 * 14 12 11 17 17 N 1.31515 * 120.00264 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 119.99827 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46957 * 90.00662 * 18 16 14 20 20 H 1.48501 * 109.47331 * 210.00188 * 18 16 14 21 21 H 1.48500 * 109.47398 * 330.00181 * 18 16 14 22 22 C 1.46842 * 111.00077 * 301.83973 * 8 7 6 23 23 H 1.09003 * 109.47240 * 270.17179 * 1 2 3 24 24 H 1.08998 * 109.47703 * 30.17384 * 1 2 3 25 25 H 1.09006 * 109.46671 * 150.17621 * 1 2 3 26 26 H 1.07996 * 126.74843 * 179.97438 * 5 4 3 27 27 H 1.09007 * 109.47237 * 154.71386 * 7 6 2 28 28 H 1.08994 * 109.47433 * 34.70685 * 7 6 2 29 29 H 1.08999 * 109.46089 * 54.14588 * 9 8 7 30 30 H 1.08998 * 109.46294 * 294.17617 * 9 8 7 31 31 H 1.09000 * 109.50632 * 179.12292 * 10 9 8 32 32 H 1.09006 * 109.50216 * 299.24086 * 10 9 8 33 33 H 1.09000 * 109.52181 * 62.25097 * 11 10 9 34 34 H 1.08997 * 109.52376 * 182.44203 * 11 10 9 35 35 H 0.97003 * 120.00342 * 179.97438 * 17 16 14 36 36 H 1.09006 * 109.46447 * 305.84971 * 22 8 7 37 37 H 1.08994 * 109.46873 * 65.82005 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2192 1.0431 0.0000 4 7 3.4575 0.6952 -0.0051 5 6 3.5321 -0.6405 -0.0032 6 6 2.2578 -1.0965 0.0033 7 6 1.8117 -2.5359 0.0070 8 7 1.5575 -2.9663 1.3883 9 6 0.4145 -2.2449 1.9623 10 6 0.0885 -2.8189 3.3430 11 6 1.3132 -2.6779 4.2512 12 6 2.5019 -3.3969 3.6072 13 1 2.2785 -4.4597 3.5149 14 6 3.7265 -3.2129 4.4659 15 1 4.6005 -2.7235 4.0623 16 6 3.7311 -3.6694 5.7669 17 7 2.6669 -4.2657 6.2584 18 14 5.2494 -3.4420 6.8311 19 1 5.1610 -2.1449 7.5489 20 1 5.3328 -4.5488 7.8176 21 1 6.4613 -3.4514 5.9731 22 6 2.7578 -2.8061 2.2188 23 1 -0.3634 0.0031 1.0277 24 1 -0.3634 0.8884 -0.5165 25 1 -0.3633 -0.8916 -0.5111 26 1 4.4321 -1.2374 -0.0067 27 1 2.5920 -3.1593 -0.4299 28 1 0.8976 -2.6345 -0.5783 29 1 -0.4508 -2.3567 1.3090 30 1 0.6630 -1.1879 2.0579 31 1 -0.7500 -2.2730 3.7754 32 1 -0.1736 -3.8726 3.2464 33 1 1.5520 -1.6221 4.3794 34 1 1.0999 -3.1246 5.2223 35 1 2.6703 -4.5871 7.1736 36 1 3.5947 -3.3255 1.7518 37 1 2.9955 -1.7465 2.3132 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595623911.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:25 Heat of formation + Delta-G solvation = 98.488065 kcal Electronic energy + Delta-G solvation = -19183.115120 eV Core-core repulsion = 16383.542714 eV Total energy + Delta-G solvation = -2799.572406 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.17284 -38.44654 -34.78131 -34.01951 -32.34739 -30.30195 -29.97651 -28.03088 -26.13211 -25.00137 -22.54645 -22.46587 -21.39929 -20.45547 -18.64606 -17.19256 -16.75715 -16.27148 -15.22958 -14.91627 -14.54780 -14.19131 -14.07405 -13.40957 -13.32386 -13.06602 -12.70528 -12.57480 -12.36301 -11.83810 -11.67563 -11.38981 -10.95717 -10.80957 -10.71915 -10.62213 -10.19711 -9.99662 -9.89781 -9.57992 -9.21243 -8.95645 -8.75710 -8.34044 -7.95620 -6.00002 -4.05874 1.68710 2.43605 2.74297 3.30869 3.37606 3.41168 4.27718 4.38701 4.47231 4.63999 4.81154 4.88913 5.10325 5.16773 5.30251 5.43813 5.59241 5.61438 5.71342 5.83924 5.92602 6.12159 6.32062 6.33901 6.39161 6.56637 6.64324 6.67119 6.86882 7.10906 7.27095 7.45072 7.60667 7.73659 8.01771 8.11857 8.44130 8.64336 8.97906 9.58899 11.06171 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.026985 B = 0.006771 C = 0.005986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.361571 B = 4134.584995 C = 4676.289432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.287 5.287 3 N -0.097 5.097 4 N -0.272 5.272 5 C -0.040 4.040 6 C -0.041 4.041 7 C 0.123 3.877 8 N -0.522 5.522 9 C 0.054 3.946 10 C -0.118 4.118 11 C -0.111 4.111 12 C 0.056 3.944 13 H 0.035 0.965 14 C -0.515 4.515 15 H 0.054 0.946 16 C 0.064 3.936 17 N -0.889 5.889 18 Si 0.890 3.110 19 H -0.282 1.282 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.065 3.935 23 H 0.094 0.906 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.187 0.813 27 H 0.103 0.897 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.023 0.977 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.027 0.973 34 H 0.092 0.908 35 H 0.260 0.740 36 H 0.063 0.937 37 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.836 3.376 -12.073 14.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.082 5.082 3 N -0.076 5.076 4 N -0.137 5.137 5 C -0.199 4.199 6 C -0.176 4.176 7 C -0.008 4.008 8 N -0.244 5.244 9 C -0.073 4.073 10 C -0.156 4.156 11 C -0.150 4.150 12 C 0.037 3.963 13 H 0.053 0.947 14 C -0.553 4.553 15 H 0.072 0.928 16 C -0.138 4.138 17 N -0.528 5.528 18 Si 0.718 3.282 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.062 4.062 23 H 0.113 0.887 24 H 0.117 0.883 25 H 0.116 0.884 26 H 0.204 0.796 27 H 0.121 0.879 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.046 0.954 34 H 0.110 0.890 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -7.010 4.333 -11.906 14.480 hybrid contribution 0.834 -0.086 0.745 1.122 sum -6.176 4.247 -11.161 13.444 Atomic orbital electron populations 1.22377 0.73469 1.05410 1.05255 1.47163 1.09012 1.04704 1.47300 1.78228 0.96734 1.12024 1.20654 1.75033 1.09507 1.12732 1.16465 1.23398 0.97315 0.91799 1.07358 1.23424 0.91738 0.93562 1.08841 1.20997 1.01832 0.84752 0.93208 1.62442 1.07179 1.54267 1.00535 1.22298 0.92680 0.95130 0.97235 1.21688 0.99304 1.00627 0.93953 1.21666 0.93699 0.98895 1.00692 1.18663 0.93749 0.95854 0.88029 0.94689 1.21136 0.99267 1.38002 0.96930 0.92779 1.24920 0.96020 0.94956 0.97869 1.69881 1.28088 1.39348 1.15499 0.86631 0.83575 0.77677 0.80360 1.20791 1.21205 1.19858 1.22389 0.89306 0.98718 0.95748 0.88742 0.88322 0.88419 0.79580 0.87881 0.90162 0.92363 0.95842 0.93461 0.91794 0.95368 0.88960 0.93041 0.91869 0.95674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 9.41 59.85 0.56 1.26 16 2 N -0.29 -4.01 3.41 -63.79 -0.22 -4.23 16 3 N -0.10 -1.64 13.16 60.35 0.79 -0.85 16 4 N -0.27 -4.89 12.41 30.24 0.38 -4.51 16 5 C -0.04 -0.64 11.07 -17.73 -0.20 -0.83 16 6 C -0.04 -0.59 4.62 -82.09 -0.38 -0.97 16 7 C 0.12 1.56 5.63 -4.98 -0.03 1.53 16 8 N -0.52 -8.56 4.86 -236.12 -1.15 -9.71 16 9 C 0.05 0.85 3.79 -3.83 -0.01 0.83 16 10 C -0.12 -2.15 6.09 -26.65 -0.16 -2.32 16 11 C -0.11 -2.58 5.03 -26.60 -0.13 -2.71 16 12 C 0.06 1.36 2.26 -91.69 -0.21 1.15 16 13 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 14 C -0.51 -14.00 8.56 -34.44 -0.29 -14.29 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 17 N -0.89 -25.13 11.36 55.43 0.63 -24.50 16 18 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 C 0.06 1.31 4.07 -3.83 -0.02 1.29 16 23 H 0.09 0.86 6.52 -51.93 -0.34 0.52 16 24 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.10 0.65 7.06 -51.93 -0.37 0.28 16 26 H 0.19 2.53 8.06 -52.49 -0.42 2.10 16 27 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.08 0.81 7.23 -51.93 -0.38 0.44 16 29 H 0.06 0.72 7.60 -51.93 -0.39 0.32 16 30 H 0.02 0.38 5.41 -51.93 -0.28 0.10 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 2.40 6.17 -51.93 -0.32 2.08 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 36 H 0.06 1.24 8.12 -51.93 -0.42 0.82 16 37 H 0.02 0.55 6.74 -51.93 -0.35 0.20 16 LS Contribution 289.70 15.07 4.37 4.37 Total: -1.00 -31.31 289.70 -6.53 -37.84 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -5.35 Total: -1.32 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -0.96 Total: -13.41 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.44 Total: -43.80 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.31 -6.53 -37.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623911.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.326 kcal (2) G-P(sol) polarization free energy of solvation -31.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds