Wall clock time and date at job start Sun Mar 29 2020 23:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47299 * 2 1 4 4 C 1.53003 * 109.47173 * 240.00100 * 2 1 3 5 5 C 1.53001 * 109.46903 * 65.00160 * 4 2 1 6 6 C 1.47196 * 109.47084 * 179.97438 * 5 4 2 7 7 N 4.86668 * 101.55220 * 255.91551 * 2 1 3 8 8 C 1.53000 * 109.47311 * 120.00275 * 2 1 3 9 9 N 1.46903 * 109.46994 * 297.77231 * 8 2 1 10 10 C 1.46850 * 111.00190 * 169.63601 * 9 8 2 11 11 C 1.53030 * 109.52312 * 185.83680 * 10 9 8 12 12 C 1.53120 * 109.28124 * 300.82078 * 11 10 9 13 13 C 1.50705 * 109.57590 * 177.59011 * 12 11 10 14 14 H 1.07997 * 119.99991 * 245.68353 * 13 12 11 15 15 C 1.37881 * 119.99849 * 65.68182 * 13 12 11 16 16 N 1.31514 * 119.99739 * 8.96643 * 15 13 12 17 17 Si 1.86796 * 120.00033 * 188.96597 * 15 13 12 18 18 H 1.48502 * 109.47211 * 94.98638 * 17 15 13 19 19 H 1.48499 * 109.47332 * 214.98809 * 17 15 13 20 20 H 1.48496 * 109.46915 * 334.98957 * 17 15 13 21 21 C 1.53115 * 109.16009 * 57.65278 * 12 11 10 22 22 C 1.46851 * 110.99650 * 293.84382 * 9 8 2 23 23 H 1.08998 * 109.47195 * 303.32710 * 1 2 3 24 24 H 1.09005 * 109.47002 * 63.32779 * 1 2 3 25 25 H 1.08999 * 109.46642 * 183.32714 * 1 2 3 26 26 H 1.09000 * 109.46926 * 185.00055 * 4 2 1 27 27 H 1.09000 * 109.47292 * 305.00018 * 4 2 1 28 28 H 1.09000 * 109.47243 * 299.99700 * 5 4 2 29 29 H 1.09000 * 109.47262 * 59.99840 * 5 4 2 30 30 H 1.08995 * 109.47276 * 57.76862 * 8 2 1 31 31 H 1.09003 * 109.47520 * 177.77573 * 8 2 1 32 32 H 1.08998 * 109.45794 * 305.85671 * 10 9 8 33 33 H 1.09000 * 109.45693 * 65.82019 * 10 9 8 34 34 H 1.09005 * 109.50254 * 180.87792 * 11 10 9 35 35 H 1.08998 * 109.50432 * 60.76258 * 11 10 9 36 36 H 1.08993 * 109.52240 * 297.75067 * 12 11 10 37 37 H 0.97007 * 119.99763 * 180.02562 * 16 15 13 38 38 H 1.09002 * 109.50364 * 182.40071 * 21 12 11 39 39 H 1.09007 * 109.53509 * 62.31087 * 21 12 11 40 40 H 1.08998 * 109.46728 * 294.17565 * 22 9 8 41 41 H 1.08996 * 109.46192 * 54.15865 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6353 0.0690 -2.4953 6 6 2.1264 -0.6245 -3.6972 7 7 2.5046 -1.1603 -4.6248 8 6 2.0400 -0.7213 1.2492 9 7 1.5948 0.0015 2.4481 10 6 1.8509 -0.7843 3.6619 11 6 1.2457 -0.0687 4.8716 12 6 1.8710 1.3230 5.0007 13 6 1.2372 2.0563 6.1548 14 1 0.6422 2.9389 5.9723 15 6 1.4170 1.6003 7.4435 16 7 2.2790 0.6370 7.6859 17 14 0.4364 2.3508 8.8451 18 1 -0.7727 1.5271 9.0999 19 1 1.2750 2.3911 10.0700 20 1 0.0273 3.7307 8.4796 21 6 1.6320 2.1036 3.7053 22 6 2.2261 1.3250 2.5293 23 1 -0.3633 0.5646 0.8586 24 1 -0.3633 0.4613 -0.9184 25 1 -0.3632 -1.0260 0.0596 26 1 3.1263 -0.7994 -1.2056 27 1 1.6054 -1.7198 -1.2952 28 1 0.5490 0.1472 -2.5390 29 1 2.0699 1.0676 -2.4493 30 1 1.6445 -1.7367 1.2694 31 1 3.1293 -0.7560 1.2295 32 1 1.3974 -1.7701 3.5586 33 1 2.9261 -0.8925 3.8043 34 1 1.4495 -0.6444 5.7745 35 1 0.1685 0.0276 4.7361 36 1 2.9426 1.2261 5.1751 37 1 2.4052 0.3159 8.5925 38 1 2.1117 3.0799 3.7749 39 1 0.5609 2.2346 3.5511 40 1 3.2995 1.2070 2.6771 41 1 2.0448 1.8712 1.6037 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602597908.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:38 Heat of formation + Delta-G solvation = -18.354010 kcal Electronic energy + Delta-G solvation = -18339.979526 eV Core-core repulsion = 15638.880811 eV Total energy + Delta-G solvation = -2701.098715 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.03366 -38.20922 -36.92254 -35.17266 -33.13600 -31.56429 -30.80156 -28.07265 -26.65486 -24.87003 -23.78685 -22.83691 -20.54370 -20.22829 -18.40851 -18.33358 -16.87066 -16.49239 -16.19042 -15.69069 -15.44084 -14.89600 -14.84608 -14.49598 -14.27204 -14.13244 -13.94758 -13.47870 -13.23827 -12.99095 -12.92282 -12.78427 -12.63834 -12.57566 -12.23292 -12.12475 -11.90541 -11.83529 -11.50680 -11.43387 -11.26604 -11.18476 -10.63024 -10.55963 -10.37141 -9.04532 -8.09452 -6.17416 1.41749 1.43523 1.53165 1.84878 1.90181 2.45979 3.03574 3.20689 3.28861 3.96606 4.11110 4.26212 4.36526 4.42157 4.46013 4.50967 4.60522 4.69907 4.78746 4.82799 4.89445 4.93178 4.95571 5.05253 5.07839 5.20459 5.24750 5.29865 5.33334 5.38414 5.42696 5.56953 5.64651 5.68210 5.82455 6.03125 6.05311 6.36696 6.43508 6.47280 6.69440 6.95832 7.49265 8.98813 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.060466 B = 0.003694 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.957247 B = 7577.213117 C = 7700.626757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.078 4.078 3 H 0.083 0.917 4 C -0.105 4.105 5 C -0.023 4.023 6 C 0.238 3.762 7 N -0.514 5.514 8 C 0.054 3.946 9 N -0.532 5.532 10 C 0.069 3.931 11 C -0.090 4.090 12 C 0.042 3.958 13 C -0.531 4.531 14 H 0.051 0.949 15 C 0.012 3.988 16 N -0.921 5.921 17 Si 0.948 3.052 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.267 1.267 21 C -0.099 4.099 22 C 0.065 3.935 23 H 0.046 0.954 24 H 0.075 0.925 25 H 0.048 0.952 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.074 0.926 31 H 0.027 0.973 32 H 0.072 0.928 33 H 0.009 0.991 34 H 0.038 0.962 35 H 0.038 0.962 36 H -0.012 1.012 37 H 0.259 0.741 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.013 0.987 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.804 -0.671 -16.199 16.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.096 4.096 3 H 0.102 0.898 4 C -0.144 4.144 5 C -0.063 4.063 6 C -0.078 4.078 7 N -0.193 5.193 8 C -0.073 4.073 9 N -0.257 5.257 10 C -0.059 4.059 11 C -0.128 4.128 12 C 0.024 3.976 13 C -0.569 4.569 14 H 0.070 0.930 15 C -0.186 4.186 16 N -0.561 5.561 17 Si 0.774 3.226 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.191 1.191 21 C -0.137 4.137 22 C -0.063 4.063 23 H 0.065 0.935 24 H 0.094 0.906 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.153 0.847 29 H 0.152 0.848 30 H 0.092 0.908 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.028 0.972 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.006 0.994 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.032 0.968 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.669 -1.502 -17.485 17.752 hybrid contribution 0.595 0.134 1.829 1.928 sum -2.074 -1.368 -15.656 15.852 Atomic orbital electron populations 1.21767 0.94086 1.01759 1.02063 1.21074 0.97021 0.99882 0.91664 0.89838 1.21480 1.01665 0.99476 0.91786 1.19667 1.04314 0.99033 0.83243 1.29987 0.91480 0.92190 0.94183 1.81264 1.11894 1.11929 1.14172 1.22266 0.97232 0.97962 0.89860 1.61930 1.58696 1.03122 1.01915 1.21986 0.96894 0.96563 0.90480 1.21352 0.98357 0.98001 0.95107 1.18667 0.93956 0.92676 0.92341 1.21601 1.31213 1.11654 0.92396 0.93031 1.25732 0.95795 0.95905 1.01166 1.70093 1.34904 1.30188 1.20881 0.85693 0.78856 0.79094 0.78939 1.20219 1.21224 1.19127 1.21531 1.00136 0.97597 0.94436 1.22104 0.94707 0.90332 0.99126 0.93485 0.90614 0.93325 0.91306 0.90977 0.84731 0.84763 0.90802 0.95493 0.90943 0.97227 0.94347 0.94274 0.99362 0.93211 0.93258 0.92699 0.96832 0.88390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.84 71.98 0.64 -1.41 16 2 C -0.08 -1.11 2.28 -10.79 -0.02 -1.13 16 3 H 0.08 1.12 6.34 -2.38 -0.02 1.10 16 4 C -0.10 -1.05 4.64 30.60 0.14 -0.91 16 5 C -0.02 -0.15 5.46 28.79 0.16 0.01 16 6 C 0.24 3.65 15.43 89.44 1.38 5.03 16 7 N -0.51 -12.10 18.54 20.00 0.37 -11.73 16 8 C 0.05 1.18 4.38 86.30 0.38 1.56 16 9 N -0.53 -15.99 4.05 -896.36 -3.63 -19.62 16 10 C 0.07 2.52 5.46 86.32 0.47 2.99 16 11 C -0.09 -4.16 5.19 30.64 0.16 -4.00 16 12 C 0.04 2.10 2.03 -11.46 -0.02 2.07 16 13 C -0.53 -29.30 8.49 25.60 0.22 -29.08 16 14 H 0.05 2.80 7.77 -2.91 -0.02 2.78 16 15 C 0.01 0.69 5.23 84.66 0.44 1.13 16 16 N -0.92 -54.07 12.17 21.45 0.26 -53.80 16 17 Si 0.95 43.78 29.55 68.60 2.03 45.81 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 21 C -0.10 -3.92 5.32 30.65 0.16 -3.76 16 22 C 0.06 2.02 5.30 86.33 0.46 2.48 16 23 H 0.05 0.96 7.77 -2.39 -0.02 0.95 16 24 H 0.08 0.67 6.41 -2.38 -0.02 0.66 16 25 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.14 0.38 6.49 -2.39 -0.02 0.37 16 29 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.07 1.55 7.98 -2.39 -0.02 1.53 16 31 H 0.03 0.60 8.12 -2.39 -0.02 0.58 16 32 H 0.07 2.39 8.01 -2.39 -0.02 2.37 16 33 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.04 2.02 6.98 -2.38 -0.02 2.00 16 35 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 36 H -0.01 -0.67 8.09 -2.39 -0.02 -0.69 16 37 H 0.26 14.47 8.31 -92.70 -0.77 13.70 16 38 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 40 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.10 2.36 6.19 -2.39 -0.01 2.34 16 Total: -1.00 -67.38 325.40 4.57 -62.82 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: 0.98 Total: 1.55 kcal Atomic # 6 Polarization: -29.57 SS G_CDS: 4.56 Total: -25.02 kcal Atomic # 7 Polarization: -82.16 SS G_CDS: -3.00 Total: -85.15 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -67.38 4.57 -62.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602597908.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.463 kcal (2) G-P(sol) polarization free energy of solvation -67.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds