Wall clock time and date at job start Sun Mar 29 2020 23:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47730 * 2 1 4 4 C 1.53007 * 109.47282 * 120.00628 * 2 1 3 5 5 C 1.50700 * 109.46688 * 294.99675 * 4 2 1 6 6 H 1.08004 * 120.00345 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99787 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99899 * 179.72143 * 7 5 4 9 9 Si 1.86806 * 120.00239 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47043 * 269.72872 * 9 7 5 11 11 H 1.48502 * 109.46635 * 29.72371 * 9 7 5 12 12 H 1.48495 * 109.47209 * 149.72923 * 9 7 5 13 13 C 1.53007 * 109.47043 * 240.00119 * 2 1 3 14 14 N 1.46898 * 109.46712 * 65.06749 * 13 2 1 15 15 C 1.46853 * 111.00043 * 199.98280 * 14 13 2 16 16 C 1.53032 * 109.52844 * 174.15958 * 15 14 13 17 17 C 1.53122 * 109.27543 * 59.17592 * 16 15 14 18 18 C 1.52998 * 109.57259 * 182.40843 * 17 16 15 19 19 C 1.47201 * 109.52128 * 62.25611 * 17 16 15 20 20 N 6.34759 * 117.32911 * 275.40910 * 2 1 3 21 21 C 1.53117 * 109.16414 * 302.34980 * 17 16 15 22 22 C 1.46843 * 111.00119 * 75.77381 * 14 13 2 23 23 H 1.08990 * 109.47567 * 185.00808 * 1 2 3 24 24 H 1.09005 * 109.46769 * 305.00584 * 1 2 3 25 25 H 1.08999 * 109.47066 * 65.00303 * 1 2 3 26 26 H 1.09002 * 109.46885 * 174.99714 * 4 2 1 27 27 H 1.08996 * 109.47106 * 54.99470 * 4 2 1 28 28 H 0.97001 * 119.99576 * 180.26689 * 8 7 5 29 29 H 1.08990 * 109.47248 * 185.06638 * 13 2 1 30 30 H 1.08995 * 109.47131 * 305.07036 * 13 2 1 31 31 H 1.08999 * 109.45909 * 294.18138 * 15 14 13 32 32 H 1.09005 * 109.46155 * 54.14382 * 15 14 13 33 33 H 1.09001 * 109.50203 * 299.24026 * 16 15 14 34 34 H 1.08990 * 109.53926 * 179.13726 * 16 15 14 35 35 H 1.09010 * 109.47022 * 179.71462 * 18 17 16 36 36 H 1.08994 * 109.47731 * 299.71958 * 18 17 16 37 37 H 1.09003 * 109.46937 * 59.71942 * 18 17 16 38 38 H 1.09003 * 109.50025 * 297.71526 * 21 17 16 39 39 H 1.09002 * 109.53950 * 177.61608 * 21 17 16 40 40 H 1.08998 * 109.46211 * 305.84896 * 22 14 13 41 41 H 1.08999 * 109.46608 * 65.83287 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6414 0.0569 2.4766 6 1 1.0807 0.9745 2.3758 7 6 1.9933 -0.4019 3.7282 8 7 1.6501 0.2801 4.7990 9 14 2.9636 -1.9886 3.9026 10 1 2.0244 -3.1322 4.0265 11 1 3.8202 -2.1792 2.7046 12 1 3.8175 -1.9159 5.1153 13 6 2.0399 -0.7213 -1.2493 14 7 1.6527 0.0383 -2.4455 15 6 1.6889 -0.8111 -3.6429 16 6 1.1424 -0.0306 -4.8405 17 6 1.9925 1.2246 -5.0563 18 6 1.4160 2.0411 -6.2146 19 6 3.3762 0.8334 -5.3711 20 7 4.4441 0.5316 -5.6140 21 6 1.9772 2.0678 -3.7783 22 6 2.4995 1.2264 -2.6115 23 1 -0.3634 -1.0236 0.0897 24 1 -0.3633 0.5896 0.8418 25 1 -0.3633 0.4343 -0.9314 26 1 3.1263 -0.7996 1.2055 27 1 1.6053 -1.7199 1.2951 28 1 1.9011 -0.0407 5.6794 29 1 3.1261 -0.8005 -1.2051 30 1 1.6044 -1.7193 -1.2959 31 1 2.7172 -1.1117 -3.8439 32 1 1.0771 -1.6980 -3.4777 33 1 0.1096 0.2584 -4.6458 34 1 1.1835 -0.6557 -5.7324 35 1 2.0193 2.9367 -6.3635 36 1 1.4272 1.4402 -7.1239 37 1 0.3906 2.3284 -5.9817 38 1 0.9575 2.3898 -3.5670 39 1 2.6148 2.9420 -3.9107 40 1 2.4764 1.8195 -1.6973 41 1 3.5240 0.9164 -2.8176 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602606958.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:03 Heat of formation + Delta-G solvation = 5.011194 kcal Electronic energy + Delta-G solvation = -18671.067067 eV Core-core repulsion = 15970.981544 eV Total energy + Delta-G solvation = -2700.085524 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.99226 -36.97558 -35.41986 -33.76858 -31.98420 -31.08663 -28.76624 -27.24175 -25.22567 -23.53260 -23.30173 -22.12589 -20.84528 -18.90196 -16.85651 -16.71236 -15.62324 -15.16209 -14.97108 -14.53416 -14.23609 -14.11632 -13.91363 -13.53405 -12.93195 -12.91544 -12.42160 -12.35811 -12.30983 -12.27548 -12.19084 -11.61125 -11.58728 -11.37154 -11.30022 -10.96082 -10.69906 -10.61631 -10.55185 -10.39894 -9.72596 -9.68366 -9.35465 -9.04031 -8.49609 -8.12681 -6.00131 -3.96727 2.61497 2.62940 3.32607 3.40264 3.43966 3.62935 4.02735 4.40591 4.48176 4.48631 4.59103 4.99976 5.18029 5.22805 5.32558 5.33483 5.33976 5.44186 5.49696 5.54563 5.70030 5.73660 5.78081 5.87076 5.89446 5.97815 6.06586 6.06808 6.29101 6.43680 6.63311 6.86700 7.05414 7.15210 7.24616 7.26827 7.37583 7.40821 7.52612 7.85274 8.59792 9.05989 9.63203 11.13348 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.038037 B = 0.004514 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.949027 B = 6201.573451 C = 6387.140663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.069 4.069 3 H 0.061 0.939 4 C -0.011 4.011 5 C -0.511 4.511 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.906 5.906 9 Si 0.877 3.123 10 H -0.278 1.278 11 H -0.267 1.267 12 H -0.289 1.289 13 C 0.057 3.943 14 N -0.529 5.529 15 C 0.049 3.951 16 C -0.102 4.102 17 C 0.032 3.968 18 C -0.139 4.139 19 C 0.218 3.782 20 N -0.441 5.441 21 C -0.103 4.103 22 C 0.048 3.952 23 H 0.037 0.963 24 H 0.056 0.944 25 H 0.047 0.953 26 H 0.011 0.989 27 H 0.010 0.990 28 H 0.262 0.738 29 H 0.029 0.971 30 H 0.068 0.932 31 H 0.026 0.974 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.892 1.672 -21.107 21.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.088 4.088 3 H 0.080 0.920 4 C -0.049 4.049 5 C -0.549 4.549 6 H 0.092 0.908 7 C -0.135 4.135 8 N -0.545 5.545 9 Si 0.705 3.295 10 H -0.204 1.204 11 H -0.192 1.192 12 H -0.215 1.215 13 C -0.070 4.070 14 N -0.253 5.253 15 C -0.080 4.080 16 C -0.141 4.141 17 C 0.028 3.972 18 C -0.197 4.197 19 C -0.100 4.100 20 N -0.116 5.116 21 C -0.142 4.142 22 C -0.080 4.080 23 H 0.057 0.943 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.029 0.971 27 H 0.029 0.971 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.099 0.901 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.114 0.886 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -1.722 1.363 -21.225 21.338 hybrid contribution 1.121 -1.104 0.317 1.605 sum -0.601 0.258 -20.908 20.918 Atomic orbital electron populations 1.21576 0.95273 1.00678 1.00507 1.20986 0.96306 0.99120 0.92381 0.92043 1.19642 0.95668 0.95888 0.93656 1.21126 1.35182 1.09513 0.89045 0.90801 1.25020 0.95659 0.96883 0.95984 1.69915 1.47308 1.39263 0.98015 0.86826 0.80668 0.84466 0.77587 1.20369 1.19184 1.21517 1.22353 0.97716 0.97046 0.89868 1.61973 1.53464 1.07435 1.02448 1.22148 0.99202 0.96218 0.90388 1.21715 1.00101 0.94247 0.97998 1.18505 0.83302 0.97692 0.97657 1.21858 1.01996 0.99601 0.96285 1.29205 0.94840 0.93148 0.92808 1.81207 1.12312 1.08827 1.09238 1.21739 1.04025 0.97075 0.91328 1.22185 0.93833 0.92814 0.99184 0.94342 0.92544 0.93390 0.97088 0.97128 0.92865 0.95250 0.91340 0.95572 0.90070 0.88646 0.90943 0.91747 0.91854 0.90134 0.88591 0.90791 0.89189 0.95482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 8.87 37.15 0.33 -1.92 16 2 C -0.07 -1.32 2.39 -90.62 -0.22 -1.54 16 3 H 0.06 1.22 6.70 -51.93 -0.35 0.87 16 4 C -0.01 -0.25 3.52 -27.88 -0.10 -0.35 16 5 C -0.51 -14.35 9.02 -34.44 -0.31 -14.66 16 6 H 0.07 2.22 7.31 -52.48 -0.38 1.84 16 7 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 8 N -0.91 -27.96 13.96 55.43 0.77 -27.19 16 9 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 C 0.06 0.92 4.39 -3.82 -0.02 0.90 16 14 N -0.53 -6.90 3.96 -234.67 -0.93 -7.83 16 15 C 0.05 0.54 5.22 -3.83 -0.02 0.52 16 16 C -0.10 -0.82 4.86 -26.65 -0.13 -0.95 16 17 C 0.03 0.26 0.72 -157.17 -0.11 0.15 16 18 C -0.14 -0.78 8.44 37.16 0.31 -0.47 16 19 C 0.22 2.50 11.60 -20.76 -0.24 2.26 16 20 N -0.44 -6.32 18.54 42.15 0.78 -5.54 16 21 C -0.10 -0.92 4.86 -26.65 -0.13 -1.04 16 22 C 0.05 0.59 5.08 -3.83 -0.02 0.57 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 1.15 7.10 -51.93 -0.37 0.78 16 25 H 0.05 0.76 7.62 -51.93 -0.40 0.37 16 26 H 0.01 0.26 7.20 -51.93 -0.37 -0.11 16 27 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 28 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.03 0.49 8.00 -51.93 -0.42 0.08 16 30 H 0.07 1.06 7.79 -51.93 -0.40 0.66 16 31 H 0.03 0.33 7.31 -51.93 -0.38 -0.05 16 32 H 0.08 0.85 7.93 -51.93 -0.41 0.43 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 1.21 6.65 -51.93 -0.35 0.86 16 41 H 0.03 0.37 7.31 -51.93 -0.38 -0.01 16 LS Contribution 321.05 15.07 4.84 4.84 Total: -1.00 -31.72 321.05 -7.10 -38.83 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -7.15 Total: -5.62 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -0.75 Total: -14.74 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.63 Total: -40.56 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.72 -7.10 -38.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602606958.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.838 kcal (2) G-P(sol) polarization free energy of solvation -31.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds