Wall clock time and date at job start Sun Mar 29 2020 23:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47730 * 2 1 4 4 C 1.53007 * 109.47282 * 120.00628 * 2 1 3 5 5 C 1.50700 * 109.46688 * 294.99675 * 4 2 1 6 6 H 1.08004 * 120.00345 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99787 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99899 * 179.72143 * 7 5 4 9 9 Si 1.86806 * 120.00239 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47043 * 269.72872 * 9 7 5 11 11 H 1.48502 * 109.46635 * 29.72371 * 9 7 5 12 12 H 1.48495 * 109.47209 * 149.72923 * 9 7 5 13 13 C 1.53007 * 109.47043 * 240.00119 * 2 1 3 14 14 N 1.46898 * 109.46712 * 65.06749 * 13 2 1 15 15 C 1.46853 * 111.00043 * 199.98280 * 14 13 2 16 16 C 1.53032 * 109.52844 * 174.15958 * 15 14 13 17 17 C 1.53122 * 109.27543 * 59.17592 * 16 15 14 18 18 C 1.52998 * 109.57259 * 182.40843 * 17 16 15 19 19 C 1.47201 * 109.52128 * 62.25611 * 17 16 15 20 20 N 6.34759 * 117.32911 * 275.40910 * 2 1 3 21 21 C 1.53117 * 109.16414 * 302.34980 * 17 16 15 22 22 C 1.46843 * 111.00119 * 75.77381 * 14 13 2 23 23 H 1.08990 * 109.47567 * 185.00808 * 1 2 3 24 24 H 1.09005 * 109.46769 * 305.00584 * 1 2 3 25 25 H 1.08999 * 109.47066 * 65.00303 * 1 2 3 26 26 H 1.09002 * 109.46885 * 174.99714 * 4 2 1 27 27 H 1.08996 * 109.47106 * 54.99470 * 4 2 1 28 28 H 0.97001 * 119.99576 * 180.26689 * 8 7 5 29 29 H 1.08990 * 109.47248 * 185.06638 * 13 2 1 30 30 H 1.08995 * 109.47131 * 305.07036 * 13 2 1 31 31 H 1.08999 * 109.45909 * 294.18138 * 15 14 13 32 32 H 1.09005 * 109.46155 * 54.14382 * 15 14 13 33 33 H 1.09001 * 109.50203 * 299.24026 * 16 15 14 34 34 H 1.08990 * 109.53926 * 179.13726 * 16 15 14 35 35 H 1.09010 * 109.47022 * 179.71462 * 18 17 16 36 36 H 1.08994 * 109.47731 * 299.71958 * 18 17 16 37 37 H 1.09003 * 109.46937 * 59.71942 * 18 17 16 38 38 H 1.09003 * 109.50025 * 297.71526 * 21 17 16 39 39 H 1.09002 * 109.53950 * 177.61608 * 21 17 16 40 40 H 1.08998 * 109.46211 * 305.84896 * 22 14 13 41 41 H 1.08999 * 109.46608 * 65.83287 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6414 0.0569 2.4766 6 1 1.0807 0.9745 2.3758 7 6 1.9933 -0.4019 3.7282 8 7 1.6501 0.2801 4.7990 9 14 2.9636 -1.9886 3.9026 10 1 2.0244 -3.1322 4.0265 11 1 3.8202 -2.1792 2.7046 12 1 3.8175 -1.9159 5.1153 13 6 2.0399 -0.7213 -1.2493 14 7 1.6527 0.0383 -2.4455 15 6 1.6889 -0.8111 -3.6429 16 6 1.1424 -0.0306 -4.8405 17 6 1.9925 1.2246 -5.0563 18 6 1.4160 2.0411 -6.2146 19 6 3.3762 0.8334 -5.3711 20 7 4.4441 0.5316 -5.6140 21 6 1.9772 2.0678 -3.7783 22 6 2.4995 1.2264 -2.6115 23 1 -0.3634 -1.0236 0.0897 24 1 -0.3633 0.5896 0.8418 25 1 -0.3633 0.4343 -0.9314 26 1 3.1263 -0.7996 1.2055 27 1 1.6053 -1.7199 1.2951 28 1 1.9011 -0.0407 5.6794 29 1 3.1261 -0.8005 -1.2051 30 1 1.6044 -1.7193 -1.2959 31 1 2.7172 -1.1117 -3.8439 32 1 1.0771 -1.6980 -3.4777 33 1 0.1096 0.2584 -4.6458 34 1 1.1835 -0.6557 -5.7324 35 1 2.0193 2.9367 -6.3635 36 1 1.4272 1.4402 -7.1239 37 1 0.3906 2.3284 -5.9817 38 1 0.9575 2.3898 -3.5670 39 1 2.6148 2.9420 -3.9107 40 1 2.4764 1.8195 -1.6973 41 1 3.5240 0.9164 -2.8176 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602606958.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:03 Heat of formation + Delta-G solvation = -14.661906 kcal Electronic energy + Delta-G solvation = -18671.920157 eV Core-core repulsion = 15970.981544 eV Total energy + Delta-G solvation = -2700.938613 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.85556 -38.16982 -36.63321 -35.13600 -33.87049 -31.90069 -30.00469 -28.78167 -26.46371 -24.58736 -24.21925 -23.53294 -21.84898 -20.49385 -18.91046 -17.65565 -16.76948 -16.12476 -16.08542 -15.82366 -15.54654 -15.31995 -15.05963 -14.68792 -14.56888 -14.04029 -13.72086 -13.49790 -13.36478 -13.21819 -13.09153 -12.78957 -12.73980 -12.63238 -12.42997 -12.27228 -12.11161 -12.06284 -11.74319 -11.49499 -11.41808 -11.21103 -11.08341 -10.88474 -10.72723 -9.24050 -8.25467 -6.26991 1.34438 1.36400 1.47584 1.73428 1.76486 2.37273 2.83526 3.02009 3.09867 3.71612 3.77436 3.92754 4.04360 4.27410 4.31955 4.38456 4.49424 4.54614 4.60726 4.76464 4.78040 4.88289 4.89788 4.94076 4.97258 5.04188 5.10475 5.12286 5.17385 5.26151 5.31651 5.40570 5.44330 5.50747 5.59469 5.75420 5.76387 6.11112 6.23930 6.37056 6.55184 6.80704 7.36533 8.91228 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.038037 B = 0.004514 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.949027 B = 6201.573451 C = 6387.140663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.064 4.064 3 H 0.048 0.952 4 C -0.009 4.009 5 C -0.515 4.515 6 H 0.038 0.962 7 C 0.003 3.997 8 N -0.953 5.953 9 Si 0.944 3.056 10 H -0.265 1.265 11 H -0.253 1.253 12 H -0.286 1.286 13 C 0.067 3.933 14 N -0.524 5.524 15 C 0.045 3.955 16 C -0.096 4.096 17 C 0.035 3.965 18 C -0.135 4.135 19 C 0.238 3.762 20 N -0.500 5.500 21 C -0.097 4.097 22 C 0.045 3.955 23 H 0.041 0.959 24 H 0.024 0.976 25 H 0.076 0.924 26 H 0.007 0.993 27 H 0.017 0.983 28 H 0.264 0.736 29 H 0.016 0.984 30 H 0.078 0.922 31 H 0.007 0.993 32 H 0.091 0.909 33 H 0.118 0.882 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.104 0.896 38 H 0.116 0.884 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.898 0.846 -23.467 23.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.083 4.083 3 H 0.067 0.933 4 C -0.047 4.047 5 C -0.553 4.553 6 H 0.056 0.944 7 C -0.193 4.193 8 N -0.594 5.594 9 Si 0.768 3.232 10 H -0.191 1.191 11 H -0.177 1.177 12 H -0.212 1.212 13 C -0.060 4.060 14 N -0.248 5.248 15 C -0.083 4.083 16 C -0.134 4.134 17 C 0.031 3.969 18 C -0.193 4.193 19 C -0.079 4.079 20 N -0.175 5.175 21 C -0.136 4.136 22 C -0.083 4.083 23 H 0.060 0.940 24 H 0.043 0.957 25 H 0.095 0.905 26 H 0.025 0.975 27 H 0.035 0.965 28 H 0.073 0.927 29 H 0.034 0.966 30 H 0.097 0.903 31 H 0.025 0.975 32 H 0.109 0.891 33 H 0.136 0.864 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.122 0.878 38 H 0.134 0.866 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -2.733 0.540 -23.614 23.778 hybrid contribution 1.396 -0.765 1.069 1.917 sum -1.338 -0.225 -22.546 22.586 Atomic orbital electron populations 1.21467 0.94345 1.00527 1.00615 1.20842 0.96960 0.98266 0.92216 0.93307 1.19606 0.95399 0.95910 0.93778 1.21437 1.34138 1.08653 0.91052 0.94399 1.25941 0.96975 1.00725 0.95627 1.70066 1.49158 1.41489 0.98691 0.85753 0.79417 0.80040 0.77987 1.19051 1.17719 1.21231 1.22093 0.96757 0.97331 0.89864 1.61961 1.52989 1.07515 1.02314 1.22284 0.98588 0.96865 0.90520 1.21760 1.00743 0.93831 0.97099 1.18767 0.81491 0.98238 0.98401 1.21881 1.03071 0.99181 0.95143 1.29935 0.95236 0.91576 0.91137 1.81220 1.14202 1.10780 1.11338 1.21749 1.05142 0.96708 0.89960 1.22223 0.93030 0.92883 1.00143 0.93953 0.95655 0.90529 0.97513 0.96484 0.92714 0.96602 0.90345 0.97500 0.89064 0.86415 0.89151 0.91602 0.91124 0.87757 0.86587 0.89887 0.90829 0.97553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.01 8.87 71.98 0.64 -3.37 16 2 C -0.06 -2.43 2.39 -10.79 -0.03 -2.46 16 3 H 0.05 1.97 6.70 -2.39 -0.02 1.95 16 4 C -0.01 -0.43 3.52 29.85 0.10 -0.32 16 5 C -0.51 -29.66 9.02 25.60 0.23 -29.43 16 6 H 0.04 2.39 7.31 -2.91 -0.02 2.37 16 7 C 0.00 0.20 5.47 84.65 0.46 0.67 16 8 N -0.95 -60.33 13.96 21.45 0.30 -60.03 16 9 Si 0.94 45.19 27.47 68.60 1.88 47.07 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 11 H -0.25 -11.46 6.54 99.48 0.65 -10.81 16 12 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 13 C 0.07 2.08 4.39 86.31 0.38 2.46 16 14 N -0.52 -12.68 3.96 -896.37 -3.55 -16.22 16 15 C 0.05 0.88 5.22 86.32 0.45 1.33 16 16 C -0.10 -1.17 4.86 30.65 0.15 -1.02 16 17 C 0.03 0.46 0.72 -53.91 -0.04 0.42 16 18 C -0.13 -0.97 8.44 71.98 0.61 -0.36 16 19 C 0.24 5.13 11.60 89.44 1.04 6.17 16 20 N -0.50 -14.22 18.54 20.01 0.37 -13.85 16 21 C -0.10 -1.47 4.86 30.65 0.15 -1.32 16 22 C 0.05 1.08 5.08 86.33 0.44 1.52 16 23 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.02 1.03 7.10 -2.38 -0.02 1.01 16 25 H 0.08 2.27 7.62 -2.39 -0.02 2.25 16 26 H 0.01 0.31 7.20 -2.39 -0.02 0.30 16 27 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 28 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 29 H 0.02 0.53 8.00 -2.39 -0.02 0.51 16 30 H 0.08 2.26 7.79 -2.39 -0.02 2.25 16 31 H 0.01 0.16 7.31 -2.39 -0.02 0.14 16 32 H 0.09 1.61 7.93 -2.38 -0.02 1.59 16 33 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 36 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.07 1.97 6.65 -2.39 -0.02 1.96 16 41 H 0.01 0.17 7.31 -2.39 -0.02 0.16 16 Total: -1.00 -71.23 321.05 4.51 -66.71 By element: Atomic # 1 Polarization: 1.10 SS G_CDS: 0.92 Total: 2.02 kcal Atomic # 6 Polarization: -30.28 SS G_CDS: 4.58 Total: -25.70 kcal Atomic # 7 Polarization: -87.23 SS G_CDS: -2.88 Total: -90.11 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.88 Total: 47.07 kcal Total: -71.23 4.51 -66.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602606958.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.052 kcal (2) G-P(sol) polarization free energy of solvation -71.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds