Wall clock time and date at job start Sun Mar 29 2020 23:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09005 * 109.47316 * 2 1 4 4 C 1.52995 * 109.47248 * 240.00462 * 2 1 3 5 5 C 1.50699 * 109.47276 * 64.99816 * 4 2 1 6 6 H 1.08007 * 119.99971 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00321 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99512 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00074 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47216 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46736 * 120.00224 * 9 7 5 12 12 H 1.48496 * 109.47408 * 240.00262 * 9 7 5 13 13 C 1.53000 * 109.47154 * 120.00349 * 2 1 3 14 14 N 1.46900 * 109.46881 * 182.14517 * 13 2 1 15 15 C 1.46844 * 111.00156 * 52.14784 * 14 13 2 16 16 C 1.53038 * 109.52196 * 185.83738 * 15 14 13 17 17 C 1.53117 * 109.28194 * 300.81857 * 16 15 14 18 18 C 1.53123 * 109.16001 * 57.65267 * 17 16 15 19 19 C 1.52994 * 109.50496 * 182.40873 * 18 17 16 20 20 C 1.47205 * 109.50184 * 62.29057 * 18 17 16 21 21 N 5.53096 * 148.97417 * 171.93226 * 2 1 3 22 22 C 1.46850 * 110.99724 * 176.35424 * 14 13 2 23 23 H 1.09005 * 109.47376 * 54.61320 * 1 2 3 24 24 H 1.09006 * 109.47012 * 294.61546 * 1 2 3 25 25 H 1.09000 * 109.47563 * 174.61411 * 1 2 3 26 26 H 1.09004 * 109.47595 * 185.00043 * 4 2 1 27 27 H 1.08998 * 109.47204 * 305.00355 * 4 2 1 28 28 H 0.97004 * 119.99393 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.47025 * 302.14537 * 13 2 1 30 30 H 1.08999 * 109.47010 * 62.14738 * 13 2 1 31 31 H 1.09005 * 109.46168 * 305.84637 * 15 14 13 32 32 H 1.08997 * 109.46795 * 65.82097 * 15 14 13 33 33 H 1.09000 * 109.50559 * 180.87680 * 16 15 14 34 34 H 1.09005 * 109.53695 * 60.77946 * 16 15 14 35 35 H 1.08999 * 109.52207 * 297.75145 * 17 16 15 36 36 H 1.08996 * 109.52981 * 177.55652 * 17 16 15 37 37 H 1.08994 * 109.47374 * 179.80588 * 19 18 17 38 38 H 1.09007 * 109.46947 * 299.80544 * 19 18 17 39 39 H 1.09004 * 109.47159 * 59.80092 * 19 18 17 40 40 H 1.09001 * 109.46454 * 294.17638 * 22 14 13 41 41 H 1.09002 * 109.46115 * 54.15953 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2492 5 6 1.6412 0.0572 -2.4766 6 1 1.0805 0.9748 -2.3756 7 6 1.9932 -0.4014 -3.7283 8 7 2.6764 -1.5184 -3.8512 9 14 1.4983 0.5631 -5.2496 10 1 0.7410 1.7741 -4.8434 11 1 2.7162 0.9688 -5.9963 12 1 0.6450 -0.2865 -6.1186 13 6 2.0399 -0.7213 1.2492 14 7 3.5080 -0.6766 1.2753 15 6 3.9955 0.6992 1.1141 16 6 5.5216 0.6909 1.0003 17 6 6.1194 0.0624 2.2621 18 6 5.5584 -1.3521 2.4331 19 6 6.1042 -1.9655 3.7241 20 6 5.9598 -2.1821 1.2856 21 7 6.2696 -2.8226 0.4001 22 6 4.0312 -1.2845 2.5054 23 1 -0.3634 0.5951 -0.8378 24 1 -0.3633 0.4281 0.9343 25 1 -0.3634 -1.0231 -0.0965 26 1 3.1263 -0.7994 -1.2057 27 1 1.6053 -1.7196 -1.2953 28 1 2.9236 -1.8412 -4.7319 29 1 1.6455 -0.2302 2.1388 30 1 1.7084 -1.7595 1.2301 31 1 3.5664 1.1331 0.2109 32 1 3.6991 1.2933 1.9785 33 1 5.8844 1.7135 0.8962 34 1 5.8190 0.1088 0.1279 35 1 5.8553 0.6664 3.1301 36 1 7.2041 0.0148 2.1667 37 1 5.7018 -2.9709 3.8471 38 1 7.1920 -2.0133 3.6720 39 1 5.8079 -1.3491 4.5729 40 1 3.7345 -0.6812 3.3634 41 1 3.6280 -2.2916 2.6127 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602608372.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:05 Heat of formation + Delta-G solvation = 7.387298 kcal Electronic energy + Delta-G solvation = -19126.361656 eV Core-core repulsion = 16426.379168 eV Total energy + Delta-G solvation = -2699.982488 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.74002 -36.66556 -35.03259 -33.22149 -32.09780 -31.56305 -27.04801 -26.84874 -25.93773 -23.40611 -22.91037 -22.23181 -20.83762 -18.56478 -16.67103 -16.14469 -15.72041 -14.85650 -14.64677 -14.35853 -14.26919 -13.75268 -13.54093 -13.17596 -12.82239 -12.65669 -12.38215 -12.07980 -12.03655 -11.76409 -11.65574 -11.55435 -11.36595 -11.27724 -10.84965 -10.83280 -10.72760 -10.56331 -10.30748 -10.22203 -9.97177 -9.54457 -9.05102 -8.79614 -8.22313 -7.83719 -5.85302 -3.87056 3.18215 3.23199 3.37055 3.44683 3.47546 3.99589 4.24305 4.55499 4.65375 4.82180 4.92234 5.16690 5.37328 5.42444 5.49373 5.51173 5.55741 5.63011 5.67559 5.76468 5.77969 5.84115 5.94424 5.98197 6.05035 6.11025 6.25780 6.33558 6.43285 6.49671 6.56403 6.97678 7.04494 7.28601 7.48476 7.52716 7.88028 8.02309 8.07355 8.22773 8.58326 9.21559 9.75452 11.25337 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.024386 B = 0.006189 C = 0.005606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.926016 B = 4523.251667 C = 4993.375813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.091 4.091 3 H 0.059 0.941 4 C 0.035 3.965 5 C -0.515 4.515 6 H 0.052 0.948 7 C 0.057 3.943 8 N -0.891 5.891 9 Si 0.883 3.117 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.286 1.286 13 C 0.067 3.933 14 N -0.529 5.529 15 C 0.051 3.949 16 C -0.123 4.123 17 C -0.107 4.107 18 C 0.041 3.959 19 C -0.139 4.139 20 C 0.223 3.777 21 N -0.427 5.427 22 C 0.067 3.933 23 H 0.061 0.939 24 H 0.028 0.972 25 H 0.046 0.954 26 H 0.032 0.968 27 H 0.009 0.991 28 H 0.257 0.743 29 H 0.019 0.981 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.027 0.973 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.047 0.953 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.427 3.713 17.771 18.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.110 4.110 3 H 0.077 0.923 4 C -0.002 4.002 5 C -0.554 4.554 6 H 0.070 0.930 7 C -0.144 4.144 8 N -0.530 5.530 9 Si 0.712 3.288 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.060 4.060 14 N -0.253 5.253 15 C -0.077 4.077 16 C -0.161 4.161 17 C -0.146 4.146 18 C 0.037 3.963 19 C -0.198 4.198 20 C -0.096 4.096 21 N -0.101 5.101 22 C -0.063 4.063 23 H 0.080 0.920 24 H 0.047 0.953 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.028 0.972 28 H 0.067 0.933 29 H 0.037 0.963 30 H 0.087 0.913 31 H 0.114 0.886 32 H 0.046 0.954 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.065 0.935 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.139 2.341 15.888 16.862 hybrid contribution -0.732 1.124 -0.054 1.342 sum 4.408 3.465 15.834 16.798 Atomic orbital electron populations 1.21679 0.96279 1.01302 0.99597 1.21370 0.94631 0.99206 0.95746 0.92302 1.19054 0.97353 0.94572 0.89174 1.21332 1.34489 1.08200 0.91371 0.92969 1.25005 0.95469 0.95053 0.98887 1.70003 1.38934 1.21125 1.22985 0.86677 0.78190 0.80153 0.83793 1.19892 1.21216 1.21217 1.22223 0.85369 1.00983 0.97428 1.61811 1.09747 1.19169 1.34533 1.22215 0.94783 0.88949 1.01732 1.21662 0.95506 1.00973 0.97952 1.21701 1.00398 0.92936 0.99517 1.18331 0.96483 0.93110 0.88418 1.21834 1.01612 1.01460 0.94894 1.28540 0.93286 0.93668 0.94062 1.81207 1.09203 1.10153 1.09579 1.22116 0.91392 1.00757 0.92004 0.92036 0.95301 0.93473 0.94992 0.97235 0.93305 0.96280 0.91276 0.88569 0.95447 0.91107 0.90815 0.90385 0.91176 0.91620 0.91586 0.90732 0.93472 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 8.91 37.15 0.33 -2.09 16 2 C -0.09 -1.82 1.86 -90.63 -0.17 -1.99 16 3 H 0.06 1.17 6.06 -51.93 -0.31 0.86 16 4 C 0.04 0.92 4.31 -27.89 -0.12 0.80 16 5 C -0.52 -14.62 8.47 -34.44 -0.29 -14.91 16 6 H 0.05 1.44 7.06 -52.48 -0.37 1.07 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -27.93 13.29 55.43 0.74 -27.19 16 9 Si 0.88 22.21 29.54 -169.99 -5.02 17.19 16 10 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 C 0.07 1.12 4.54 -3.82 -0.02 1.11 16 14 N -0.53 -8.53 3.60 -234.67 -0.84 -9.37 16 15 C 0.05 0.76 5.03 -3.84 -0.02 0.74 16 16 C -0.12 -1.64 5.83 -26.65 -0.16 -1.80 16 17 C -0.11 -1.09 4.77 -26.61 -0.13 -1.22 16 18 C 0.04 0.46 0.72 -157.21 -0.11 0.35 16 19 C -0.14 -1.08 8.44 37.15 0.31 -0.77 16 20 C 0.22 3.58 12.34 -20.76 -0.26 3.32 16 21 N -0.43 -8.45 18.54 42.15 0.78 -7.67 16 22 C 0.07 0.82 4.15 -3.83 -0.02 0.80 16 23 H 0.06 1.22 7.12 -51.93 -0.37 0.85 16 24 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.03 0.91 7.50 -51.93 -0.39 0.52 16 27 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 29 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.10 1.70 5.75 -51.93 -0.30 1.41 16 32 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 1.24 7.36 -51.93 -0.38 0.86 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.97 8.12 -51.93 -0.42 0.55 16 LS Contribution 324.24 15.07 4.89 4.89 Total: -1.00 -33.35 324.24 -7.38 -40.73 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -7.18 Total: -4.49 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -0.74 Total: -14.08 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.67 Total: -44.23 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.35 -7.38 -40.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602608372.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.118 kcal (2) G-P(sol) polarization free energy of solvation -33.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds