Wall clock time and date at job start Sun Mar 29 2020 23:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08993 * 109.47382 * 2 1 4 4 C 1.53004 * 109.47041 * 120.00302 * 2 1 3 5 5 C 1.50694 * 109.46803 * 294.99418 * 4 2 1 6 6 H 1.07998 * 120.00658 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99902 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00068 * 179.73318 * 7 5 4 9 9 Si 1.86798 * 119.99850 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.47498 * 269.72747 * 9 7 5 11 11 H 1.48503 * 109.47037 * 29.73108 * 9 7 5 12 12 H 1.48506 * 109.46818 * 149.72569 * 9 7 5 13 13 C 1.53005 * 109.47154 * 240.00013 * 2 1 3 14 14 N 1.46893 * 109.47199 * 174.79340 * 13 2 1 15 15 C 1.46848 * 111.00180 * 288.32066 * 14 13 2 16 16 C 1.53037 * 109.52382 * 174.16032 * 15 14 13 17 17 C 1.53118 * 109.27837 * 59.18109 * 16 15 14 18 18 C 1.53117 * 109.16072 * 302.34575 * 17 16 15 19 19 C 1.53002 * 109.50450 * 177.59528 * 18 17 16 20 20 C 1.47206 * 109.53331 * 297.69221 * 18 17 16 21 21 N 5.31402 * 155.73541 * 174.45063 * 2 1 3 22 22 C 1.46850 * 110.99948 * 164.11039 * 14 13 2 23 23 H 1.09003 * 109.47495 * 185.41095 * 1 2 3 24 24 H 1.08998 * 109.47392 * 305.40976 * 1 2 3 25 25 H 1.09001 * 109.47358 * 65.40960 * 1 2 3 26 26 H 1.09006 * 109.46881 * 174.99998 * 4 2 1 27 27 H 1.08988 * 109.47149 * 55.00312 * 4 2 1 28 28 H 0.97007 * 120.00008 * 180.27486 * 8 7 5 29 29 H 1.09004 * 109.46927 * 294.79408 * 13 2 1 30 30 H 1.08999 * 109.46850 * 54.79202 * 13 2 1 31 31 H 1.08994 * 109.46413 * 294.17999 * 15 14 13 32 32 H 1.09003 * 109.45860 * 54.14578 * 15 14 13 33 33 H 1.09002 * 109.50557 * 299.24057 * 16 15 14 34 34 H 1.09007 * 109.53483 * 179.14095 * 16 15 14 35 35 H 1.09001 * 109.52426 * 182.43970 * 17 16 15 36 36 H 1.08996 * 109.57568 * 62.28084 * 17 16 15 37 37 H 1.09001 * 109.47149 * 300.19865 * 19 18 17 38 38 H 1.09007 * 109.46962 * 60.19321 * 19 18 17 39 39 H 1.09001 * 109.47120 * 180.19463 * 19 18 17 40 40 H 1.08992 * 109.46454 * 305.85652 * 22 14 13 41 41 H 1.09003 * 109.46185 * 65.82638 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6413 0.0570 2.4765 6 1 1.0800 0.9741 2.3757 7 6 1.9932 -0.4018 3.7282 8 7 1.6499 0.2802 4.7990 9 14 2.9635 -1.9885 3.9027 10 1 2.0242 -3.1320 4.0267 11 1 3.8201 -2.1791 2.7048 12 1 3.8175 -1.9156 5.1154 13 6 2.0400 -0.7213 -1.2493 14 7 3.5035 -0.6134 -1.3138 15 6 3.9160 0.7547 -1.6525 16 6 5.4400 0.8650 -1.5682 17 6 6.0737 -0.1344 -2.5399 18 6 5.5900 -1.5458 -2.1956 19 6 6.1713 -2.5439 -3.1989 20 6 6.0328 -1.9001 -0.8372 21 7 6.3745 -2.1736 0.2112 22 6 4.0616 -1.5863 -2.2616 23 1 -0.3634 -1.0231 0.0969 24 1 -0.3634 0.5954 0.8375 25 1 -0.3634 0.4276 -0.9345 26 1 3.1263 -0.7995 1.2056 27 1 1.6054 -1.7198 1.2951 28 1 1.9010 -0.0405 5.6795 29 1 1.7547 -1.7724 -1.2039 30 1 1.6024 -0.2641 -2.1368 31 1 3.5901 0.9920 -2.6651 32 1 3.4618 1.4550 -0.9514 33 1 5.7655 0.6412 -0.5523 34 1 5.7475 1.8764 -1.8344 35 1 7.1593 -0.0898 -2.4518 36 1 5.7806 0.1123 -3.5603 37 1 5.8443 -2.2802 -4.2048 38 1 7.2599 -2.5146 -3.1515 39 1 5.8239 -3.5480 -2.9554 40 1 3.7133 -2.5862 -2.0031 41 1 3.7351 -1.3380 -3.2715 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602608375.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:10 Heat of formation + Delta-G solvation = 7.491653 kcal Electronic energy + Delta-G solvation = -19202.008064 eV Core-core repulsion = 16502.030100 eV Total energy + Delta-G solvation = -2699.977963 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.83218 -36.69449 -35.17975 -33.35907 -32.18248 -31.64947 -27.66852 -26.91281 -26.08746 -23.25647 -23.06356 -22.04991 -20.85856 -18.77558 -16.82089 -16.45054 -15.81938 -14.94875 -14.81215 -14.47653 -14.11840 -13.83345 -13.48701 -13.30406 -13.02246 -12.71521 -12.50888 -12.27463 -12.18052 -12.01962 -11.74697 -11.67398 -11.49551 -11.40303 -10.98472 -10.91137 -10.82408 -10.64490 -10.38131 -10.16624 -9.65002 -9.57112 -9.34667 -8.89249 -8.38202 -7.99232 -5.90292 -3.85555 3.07503 3.12432 3.43682 3.52270 3.65507 3.87530 4.10955 4.54493 4.61927 4.69460 4.81317 5.02471 5.24335 5.32338 5.40379 5.43375 5.46147 5.51243 5.54865 5.62980 5.66206 5.75443 5.83721 5.87055 5.95565 5.99826 6.14027 6.19928 6.30267 6.33923 6.44419 6.86921 6.98424 7.14783 7.31912 7.37020 7.55852 7.74876 7.91621 7.98929 8.69406 9.15642 9.75015 11.23196 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.020826 B = 0.007484 C = 0.006331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.160217 B = 3740.531679 C = 4421.430289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.074 4.074 3 H 0.062 0.938 4 C -0.001 4.001 5 C -0.511 4.511 6 H 0.070 0.930 7 C 0.066 3.934 8 N -0.910 5.910 9 Si 0.872 3.128 10 H -0.281 1.281 11 H -0.259 1.259 12 H -0.291 1.291 13 C 0.064 3.936 14 N -0.534 5.534 15 C 0.055 3.945 16 C -0.124 4.124 17 C -0.107 4.107 18 C 0.040 3.960 19 C -0.140 4.140 20 C 0.223 3.777 21 N -0.428 5.428 22 C 0.067 3.933 23 H 0.045 0.955 24 H 0.066 0.934 25 H 0.030 0.970 26 H 0.030 0.970 27 H 0.002 0.998 28 H 0.260 0.740 29 H 0.068 0.932 30 H 0.026 0.974 31 H 0.031 0.969 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.697 -2.181 -21.161 22.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.093 4.093 3 H 0.080 0.920 4 C -0.038 4.038 5 C -0.549 4.549 6 H 0.088 0.912 7 C -0.134 4.134 8 N -0.550 5.550 9 Si 0.699 3.301 10 H -0.207 1.207 11 H -0.183 1.183 12 H -0.218 1.218 13 C -0.063 4.063 14 N -0.258 5.258 15 C -0.072 4.072 16 C -0.162 4.162 17 C -0.145 4.145 18 C 0.036 3.964 19 C -0.198 4.198 20 C -0.096 4.096 21 N -0.102 5.102 22 C -0.063 4.063 23 H 0.064 0.936 24 H 0.085 0.915 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.021 0.979 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.044 0.956 31 H 0.049 0.951 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.415 -2.711 -18.905 20.488 hybrid contribution -0.030 -0.558 -0.760 0.943 sum 7.385 -3.269 -19.665 21.259 Atomic orbital electron populations 1.21698 0.95949 1.01337 1.00084 1.21039 0.94510 0.99365 0.94395 0.91962 1.19521 0.97122 0.94744 0.92407 1.21210 1.34833 1.09378 0.89441 0.91216 1.24978 0.95581 0.96843 0.96000 1.69922 1.47681 1.39387 0.97964 0.86884 0.80781 0.84324 0.78085 1.20735 1.18266 1.21756 1.22280 0.85211 1.00997 0.97839 1.61781 1.11058 1.04311 1.48615 1.22132 0.95316 0.90661 0.99125 1.21668 0.95295 0.98761 1.00445 1.21691 1.00784 0.91889 1.00155 1.18352 0.96201 0.97073 0.84792 1.21839 1.01470 0.98433 0.98091 1.28573 0.93273 0.93430 0.94325 1.81224 1.09419 1.08575 1.11011 1.22135 0.91152 0.97880 0.95085 0.93596 0.91541 0.95057 0.95134 0.97943 0.93046 0.91385 0.95584 0.95075 0.89604 0.90890 0.90948 0.91061 0.90244 0.90647 0.91531 0.91576 0.90124 0.93270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 8.91 37.15 0.33 -2.10 16 2 C -0.07 -1.45 2.35 -90.62 -0.21 -1.66 16 3 H 0.06 1.25 6.47 -51.93 -0.34 0.92 16 4 C 0.00 -0.01 3.46 -27.88 -0.10 -0.11 16 5 C -0.51 -14.94 9.03 -34.44 -0.31 -15.25 16 6 H 0.07 2.16 7.30 -52.49 -0.38 1.78 16 7 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 8 N -0.91 -29.27 13.96 55.43 0.77 -28.50 16 9 Si 0.87 23.75 27.47 -169.99 -4.67 19.08 16 10 H -0.28 -7.48 7.11 56.52 0.40 -7.07 16 11 H -0.26 -7.12 6.54 56.52 0.37 -6.75 16 12 H -0.29 -7.93 7.11 56.52 0.40 -7.53 16 13 C 0.06 0.99 4.36 -3.83 -0.02 0.98 16 14 N -0.53 -7.97 3.59 -234.67 -0.84 -8.81 16 15 C 0.06 0.72 5.30 -3.83 -0.02 0.70 16 16 C -0.12 -1.45 5.83 -26.65 -0.16 -1.61 16 17 C -0.11 -0.97 4.77 -26.61 -0.13 -1.10 16 18 C 0.04 0.42 0.72 -157.21 -0.11 0.31 16 19 C -0.14 -1.01 8.44 37.16 0.31 -0.69 16 20 C 0.22 3.45 12.35 -20.76 -0.26 3.19 16 21 N -0.43 -8.32 18.54 42.15 0.78 -7.54 16 22 C 0.07 0.76 4.14 -3.83 -0.02 0.75 16 23 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.07 1.36 7.12 -51.93 -0.37 0.99 16 25 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.03 0.81 6.68 -51.93 -0.35 0.46 16 27 H 0.00 0.06 7.57 -51.94 -0.39 -0.34 16 28 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 29 H 0.07 1.05 7.87 -51.93 -0.41 0.64 16 30 H 0.03 0.35 8.06 -51.93 -0.42 -0.07 16 31 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 1.29 6.41 -51.93 -0.33 0.95 16 33 H 0.07 1.09 7.36 -51.93 -0.38 0.71 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.94 7.96 -51.93 -0.41 0.53 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 321.96 15.07 4.85 4.85 Total: -1.00 -34.72 321.96 -7.06 -41.78 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: -7.18 Total: -6.20 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: -0.78 Total: -14.66 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.71 Total: -44.85 kcal Atomic # 14 Polarization: 23.75 SS G_CDS: -4.67 Total: 19.08 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.72 -7.06 -41.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602608375.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.275 kcal (2) G-P(sol) polarization free energy of solvation -34.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds