Wall clock time and date at job start Sun Mar 29 2020 23:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08993 * 109.47382 * 2 1 4 4 C 1.53004 * 109.47041 * 120.00302 * 2 1 3 5 5 C 1.50694 * 109.46803 * 294.99418 * 4 2 1 6 6 H 1.07998 * 120.00658 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99902 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00068 * 179.73318 * 7 5 4 9 9 Si 1.86798 * 119.99850 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.47498 * 269.72747 * 9 7 5 11 11 H 1.48503 * 109.47037 * 29.73108 * 9 7 5 12 12 H 1.48506 * 109.46818 * 149.72569 * 9 7 5 13 13 C 1.53005 * 109.47154 * 240.00013 * 2 1 3 14 14 N 1.46893 * 109.47199 * 174.79340 * 13 2 1 15 15 C 1.46848 * 111.00180 * 288.32066 * 14 13 2 16 16 C 1.53037 * 109.52382 * 174.16032 * 15 14 13 17 17 C 1.53118 * 109.27837 * 59.18109 * 16 15 14 18 18 C 1.53117 * 109.16072 * 302.34575 * 17 16 15 19 19 C 1.53002 * 109.50450 * 177.59528 * 18 17 16 20 20 C 1.47206 * 109.53331 * 297.69221 * 18 17 16 21 21 N 5.31402 * 155.73541 * 174.45063 * 2 1 3 22 22 C 1.46850 * 110.99948 * 164.11039 * 14 13 2 23 23 H 1.09003 * 109.47495 * 185.41095 * 1 2 3 24 24 H 1.08998 * 109.47392 * 305.40976 * 1 2 3 25 25 H 1.09001 * 109.47358 * 65.40960 * 1 2 3 26 26 H 1.09006 * 109.46881 * 174.99998 * 4 2 1 27 27 H 1.08988 * 109.47149 * 55.00312 * 4 2 1 28 28 H 0.97007 * 120.00008 * 180.27486 * 8 7 5 29 29 H 1.09004 * 109.46927 * 294.79408 * 13 2 1 30 30 H 1.08999 * 109.46850 * 54.79202 * 13 2 1 31 31 H 1.08994 * 109.46413 * 294.17999 * 15 14 13 32 32 H 1.09003 * 109.45860 * 54.14578 * 15 14 13 33 33 H 1.09002 * 109.50557 * 299.24057 * 16 15 14 34 34 H 1.09007 * 109.53483 * 179.14095 * 16 15 14 35 35 H 1.09001 * 109.52426 * 182.43970 * 17 16 15 36 36 H 1.08996 * 109.57568 * 62.28084 * 17 16 15 37 37 H 1.09001 * 109.47149 * 300.19865 * 19 18 17 38 38 H 1.09007 * 109.46962 * 60.19321 * 19 18 17 39 39 H 1.09001 * 109.47120 * 180.19463 * 19 18 17 40 40 H 1.08992 * 109.46454 * 305.85652 * 22 14 13 41 41 H 1.09003 * 109.46185 * 65.82638 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6413 0.0570 2.4765 6 1 1.0800 0.9741 2.3757 7 6 1.9932 -0.4018 3.7282 8 7 1.6499 0.2802 4.7990 9 14 2.9635 -1.9885 3.9027 10 1 2.0242 -3.1320 4.0267 11 1 3.8201 -2.1791 2.7048 12 1 3.8175 -1.9156 5.1154 13 6 2.0400 -0.7213 -1.2493 14 7 3.5035 -0.6134 -1.3138 15 6 3.9160 0.7547 -1.6525 16 6 5.4400 0.8650 -1.5682 17 6 6.0737 -0.1344 -2.5399 18 6 5.5900 -1.5458 -2.1956 19 6 6.1713 -2.5439 -3.1989 20 6 6.0328 -1.9001 -0.8372 21 7 6.3745 -2.1736 0.2112 22 6 4.0616 -1.5863 -2.2616 23 1 -0.3634 -1.0231 0.0969 24 1 -0.3634 0.5954 0.8375 25 1 -0.3634 0.4276 -0.9345 26 1 3.1263 -0.7995 1.2056 27 1 1.6054 -1.7198 1.2951 28 1 1.9010 -0.0405 5.6795 29 1 1.7547 -1.7724 -1.2039 30 1 1.6024 -0.2641 -2.1368 31 1 3.5901 0.9920 -2.6651 32 1 3.4618 1.4550 -0.9514 33 1 5.7655 0.6412 -0.5523 34 1 5.7475 1.8764 -1.8344 35 1 7.1593 -0.0898 -2.4518 36 1 5.7806 0.1123 -3.5603 37 1 5.8443 -2.2802 -4.2048 38 1 7.2599 -2.5146 -3.1515 39 1 5.8239 -3.5480 -2.9554 40 1 3.7133 -2.5862 -2.0031 41 1 3.7351 -1.3380 -3.2715 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602608375.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:10 Heat of formation + Delta-G solvation = -15.475479 kcal Electronic energy + Delta-G solvation = -19203.003993 eV Core-core repulsion = 16502.030100 eV Total energy + Delta-G solvation = -2700.973893 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.77918 -38.02517 -36.59391 -34.91225 -33.80310 -32.82328 -29.67055 -27.71075 -27.17671 -24.82765 -23.96329 -23.52662 -21.90232 -20.34614 -18.97450 -17.55756 -16.87959 -16.54422 -15.77684 -15.76152 -15.41535 -15.06394 -14.98828 -14.60233 -14.38263 -14.11710 -13.99159 -13.54350 -13.38700 -13.07592 -12.93497 -12.86698 -12.77549 -12.70591 -12.56516 -12.39910 -12.13695 -11.82489 -11.77685 -11.52021 -11.34180 -11.19397 -11.09126 -10.84752 -10.76502 -9.00602 -8.31730 -6.29401 1.21473 1.27536 1.42660 1.92011 1.97580 2.30342 2.92068 3.05368 3.14377 3.75220 3.86500 4.00963 4.11859 4.20758 4.36064 4.45008 4.52572 4.62274 4.70551 4.72905 4.78683 4.87205 4.89390 4.91982 4.96507 5.04032 5.07239 5.10197 5.13681 5.29935 5.36410 5.38882 5.43759 5.50034 5.61580 5.70999 5.78192 6.29412 6.34283 6.36882 6.77049 6.78931 7.33824 8.85230 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.020826 B = 0.007484 C = 0.006331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.160217 B = 3740.531679 C = 4421.430289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 H 0.049 0.951 4 C 0.009 3.991 5 C -0.509 4.509 6 H 0.040 0.960 7 C 0.010 3.990 8 N -0.951 5.951 9 Si 0.935 3.065 10 H -0.264 1.264 11 H -0.267 1.267 12 H -0.289 1.289 13 C 0.076 3.924 14 N -0.572 5.572 15 C 0.057 3.943 16 C -0.124 4.124 17 C -0.099 4.099 18 C 0.037 3.963 19 C -0.134 4.134 20 C 0.248 3.752 21 N -0.514 5.514 22 C 0.066 3.934 23 H 0.048 0.952 24 H 0.031 0.969 25 H 0.070 0.930 26 H 0.011 0.989 27 H 0.000 1.000 28 H 0.263 0.737 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.025 0.975 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.122 0.878 37 H 0.111 0.889 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.016 -3.060 -25.418 26.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.092 4.092 3 H 0.068 0.932 4 C -0.028 4.028 5 C -0.547 4.547 6 H 0.058 0.942 7 C -0.186 4.186 8 N -0.594 5.594 9 Si 0.761 3.239 10 H -0.189 1.189 11 H -0.192 1.192 12 H -0.216 1.216 13 C -0.052 4.052 14 N -0.297 5.297 15 C -0.070 4.070 16 C -0.162 4.162 17 C -0.137 4.137 18 C 0.033 3.967 19 C -0.192 4.192 20 C -0.069 4.069 21 N -0.190 5.190 22 C -0.062 4.062 23 H 0.067 0.933 24 H 0.050 0.950 25 H 0.089 0.911 26 H 0.029 0.971 27 H 0.018 0.982 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.044 0.956 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.140 0.860 37 H 0.130 0.870 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.731 -3.597 -23.180 24.698 hybrid contribution -0.159 -0.177 0.552 0.601 sum 7.572 -3.775 -22.628 24.158 Atomic orbital electron populations 1.21617 0.94947 1.01186 1.00744 1.20958 0.95392 0.98576 0.94248 0.93229 1.19377 0.95817 0.94423 0.93181 1.21597 1.33306 1.08520 0.91296 0.94222 1.25765 0.96899 1.00007 0.95969 1.70044 1.49499 1.41264 0.98545 0.85886 0.79438 0.81180 0.77425 1.18942 1.19215 1.21568 1.22042 0.86125 1.00563 0.96426 1.61656 1.10720 1.05946 1.51352 1.22102 0.95764 0.89212 0.99947 1.21671 0.94828 1.00955 0.98778 1.21742 1.01102 0.89605 1.01266 1.18856 0.96114 0.99127 0.82619 1.21870 1.01674 0.97110 0.98538 1.29776 0.91100 0.91043 0.95005 1.81224 1.12293 1.11638 1.13807 1.22250 0.91060 0.96602 0.96305 0.93294 0.94978 0.91074 0.97077 0.98202 0.92848 0.91198 0.92213 0.91628 0.92853 0.95591 0.88972 0.90207 0.86023 0.87013 0.91036 0.91919 0.90747 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.53 8.91 71.98 0.64 -3.89 16 2 C -0.07 -2.81 2.35 -10.79 -0.03 -2.84 16 3 H 0.05 2.03 6.47 -2.39 -0.02 2.01 16 4 C 0.01 0.48 3.46 29.85 0.10 0.58 16 5 C -0.51 -30.93 9.03 25.60 0.23 -30.70 16 6 H 0.04 2.59 7.30 -2.91 -0.02 2.57 16 7 C 0.01 0.61 5.47 84.66 0.46 1.07 16 8 N -0.95 -63.23 13.96 21.45 0.30 -62.93 16 9 Si 0.93 50.70 27.47 68.60 1.88 52.58 16 10 H -0.26 -13.53 7.11 99.48 0.71 -12.82 16 11 H -0.27 -14.81 6.54 99.48 0.65 -14.16 16 12 H -0.29 -15.51 7.11 99.48 0.71 -14.80 16 13 C 0.08 2.15 4.36 86.31 0.38 2.52 16 14 N -0.57 -15.80 3.59 -896.36 -3.22 -19.02 16 15 C 0.06 1.36 5.30 86.33 0.46 1.82 16 16 C -0.12 -2.69 5.83 30.65 0.18 -2.51 16 17 C -0.10 -1.39 4.77 30.67 0.15 -1.25 16 18 C 0.04 0.66 0.72 -53.93 -0.04 0.62 16 19 C -0.13 -1.31 8.44 71.98 0.61 -0.71 16 20 C 0.25 7.57 12.35 89.44 1.10 8.68 16 21 N -0.51 -20.63 18.54 20.01 0.37 -20.26 16 22 C 0.07 1.25 4.14 86.33 0.36 1.61 16 23 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 24 H 0.03 1.33 7.12 -2.39 -0.02 1.31 16 25 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.01 0.59 6.68 -2.38 -0.02 0.58 16 27 H 0.00 -0.02 7.57 -2.39 -0.02 -0.04 16 28 H 0.26 16.44 8.31 -92.70 -0.77 15.67 16 29 H 0.07 1.96 7.87 -2.38 -0.02 1.94 16 30 H 0.06 1.32 8.06 -2.39 -0.02 1.30 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.05 1.59 6.41 -2.39 -0.02 1.58 16 33 H 0.03 0.79 7.36 -2.39 -0.02 0.77 16 34 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 39 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.07 1.50 7.96 -2.39 -0.02 1.48 16 41 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -81.37 321.96 4.86 -76.51 By element: Atomic # 1 Polarization: -2.81 SS G_CDS: 0.92 Total: -1.89 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: 4.60 Total: -24.99 kcal Atomic # 7 Polarization: -99.66 SS G_CDS: -2.55 Total: -102.21 kcal Atomic # 14 Polarization: 50.70 SS G_CDS: 1.88 Total: 52.58 kcal Total: -81.37 4.86 -76.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602608375.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.032 kcal (2) G-P(sol) polarization free energy of solvation -81.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds