Wall clock time and date at job start Sun Mar 29 2020 23:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46956 * 2 1 4 4 C 1.53000 * 109.46842 * 239.99819 * 2 1 3 5 5 C 1.53003 * 109.47040 * 65.00458 * 4 2 1 6 6 C 1.47201 * 109.47081 * 179.97438 * 5 4 2 7 7 N 4.86675 * 101.55076 * 255.91270 * 2 1 3 8 8 C 1.53001 * 109.47118 * 119.99952 * 2 1 3 9 9 N 1.46900 * 109.46763 * 295.44434 * 8 2 1 10 10 C 1.46847 * 110.99578 * 169.51444 * 9 8 2 11 11 C 1.53044 * 109.52340 * 185.83650 * 10 9 8 12 12 C 1.53118 * 109.27491 * 300.81857 * 11 10 9 13 13 C 1.53123 * 109.16226 * 57.65275 * 12 11 10 14 14 H 1.09002 * 109.53251 * 62.30320 * 13 12 11 15 15 C 1.50702 * 109.50096 * 182.40006 * 13 12 11 16 16 H 1.08003 * 119.99616 * 114.08587 * 15 13 12 17 17 C 1.37877 * 120.00378 * 294.08416 * 15 13 12 18 18 N 1.31503 * 119.99801 * 156.02855 * 17 15 13 19 19 Si 1.86801 * 119.99646 * 336.02753 * 17 15 13 20 20 H 1.48500 * 109.46711 * 179.97438 * 19 17 15 21 21 H 1.48498 * 109.47116 * 60.00604 * 19 17 15 22 22 H 1.48492 * 109.47415 * 299.99791 * 19 17 15 23 23 C 1.46849 * 111.00020 * 293.71830 * 9 8 2 24 24 H 1.09005 * 109.46861 * 63.90258 * 1 2 3 25 25 H 1.08994 * 109.47196 * 183.90596 * 1 2 3 26 26 H 1.09003 * 109.47035 * 303.91049 * 1 2 3 27 27 H 1.09004 * 109.46674 * 184.99818 * 4 2 1 28 28 H 1.08998 * 109.47183 * 305.00389 * 4 2 1 29 29 H 1.09004 * 109.46864 * 299.99243 * 5 4 2 30 30 H 1.08998 * 109.47189 * 59.99934 * 5 4 2 31 31 H 1.08995 * 109.47137 * 175.43676 * 8 2 1 32 32 H 1.09002 * 109.47060 * 55.43911 * 8 2 1 33 33 H 1.09000 * 109.46537 * 305.84853 * 10 9 8 34 34 H 1.08998 * 109.46600 * 65.83322 * 10 9 8 35 35 H 1.09000 * 109.49893 * 60.75744 * 11 10 9 36 36 H 1.08996 * 109.50433 * 180.87667 * 11 10 9 37 37 H 1.08994 * 109.52484 * 297.74706 * 12 11 10 38 38 H 1.09005 * 109.51978 * 177.55568 * 12 11 10 39 39 H 0.96995 * 120.00507 * 354.95783 * 18 17 15 40 40 H 1.08996 * 109.46040 * 54.14894 * 23 9 8 41 41 H 1.09003 * 109.45156 * 294.17467 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6353 0.0689 -2.4953 6 6 2.1264 -0.6247 -3.6972 7 7 2.5045 -1.1606 -4.6248 8 6 2.0400 -0.7212 1.2493 9 7 1.6422 0.0319 2.4461 10 6 1.8930 -0.7470 3.6654 11 6 1.3352 0.0046 4.8763 12 6 2.0110 1.3750 4.9757 13 6 1.7757 2.1470 3.6744 14 1 0.7072 2.3136 3.5376 15 6 2.4873 3.4738 3.7409 16 1 3.3141 3.6770 3.0764 17 6 2.0828 4.4283 4.6500 18 7 2.9275 5.3522 5.0530 19 14 0.3351 4.4090 5.3091 20 1 0.1542 5.5311 6.2649 21 1 0.0825 3.1215 6.0046 22 1 -0.6206 4.5590 4.1825 23 6 2.3205 1.3333 2.4986 24 1 -0.3633 0.4521 -0.9229 25 1 -0.3633 -1.0252 0.0700 26 1 -0.3633 0.5733 0.8529 27 1 3.1263 -0.7995 -1.2056 28 1 1.6053 -1.7198 -1.2951 29 1 0.5489 0.1471 -2.5390 30 1 2.0699 1.0674 -2.4494 31 1 3.1269 -0.7926 1.2093 32 1 1.6115 -1.7226 1.2911 33 1 1.4036 -1.7175 3.5835 34 1 2.9662 -0.8909 3.7903 35 1 0.2597 0.1369 4.7586 36 1 1.5353 -0.5664 5.7829 37 1 3.0815 1.2428 5.1322 38 1 1.5856 1.9311 5.8112 39 1 3.8541 5.3197 4.7681 40 1 2.1417 1.8737 1.5691 41 1 3.3917 1.1793 2.6289 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602705802.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:44 Heat of formation + Delta-G solvation = -0.949990 kcal Electronic energy + Delta-G solvation = -18598.039867 eV Core-core repulsion = 15897.695846 eV Total energy + Delta-G solvation = -2700.344020 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.87312 -37.35305 -35.91505 -33.50183 -32.09300 -30.27386 -29.93583 -26.46128 -24.74518 -24.54686 -22.22943 -20.93410 -19.72509 -18.70495 -17.69575 -17.41278 -15.86489 -15.43580 -14.73445 -14.40627 -14.18382 -13.73487 -13.70564 -13.37272 -13.04859 -12.78681 -12.65557 -12.57566 -12.23131 -12.00562 -11.89769 -11.75932 -11.35033 -11.24575 -10.78478 -10.67472 -10.58304 -10.51291 -10.41421 -10.08859 -9.79107 -9.55506 -9.32782 -8.78148 -8.13191 -7.79753 -6.43746 -4.02111 2.57103 2.60890 3.44301 3.48298 3.66256 3.77118 4.34219 4.54849 4.73483 4.74055 5.05779 5.14745 5.23224 5.32182 5.37246 5.50605 5.58435 5.64470 5.66574 5.80817 5.83707 5.87991 6.01484 6.03726 6.11623 6.20788 6.32738 6.39188 6.41908 6.52639 6.56982 6.72333 6.88421 6.97305 7.34760 7.38000 7.49972 7.64810 7.68715 8.26048 8.40524 8.93083 9.63130 10.93248 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.025585 B = 0.004996 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.131012 B = 5603.162872 C = 6101.424532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 H 0.082 0.918 4 C -0.110 4.110 5 C -0.030 4.030 6 C 0.211 3.789 7 N -0.449 5.449 8 C 0.061 3.939 9 N -0.539 5.539 10 C 0.064 3.936 11 C -0.120 4.120 12 C -0.119 4.119 13 C 0.030 3.970 14 H 0.028 0.972 15 C -0.607 4.607 16 H 0.053 0.947 17 C 0.039 3.961 18 N -0.902 5.902 19 Si 1.038 2.962 20 H -0.289 1.289 21 H -0.277 1.277 22 H -0.283 1.283 23 C 0.074 3.926 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.026 0.974 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.024 0.976 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.046 0.954 38 H 0.055 0.945 39 H 0.268 0.732 40 H 0.067 0.933 41 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.793 -11.978 -7.569 14.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 H 0.100 0.900 4 C -0.149 4.149 5 C -0.070 4.070 6 C -0.107 4.107 7 N -0.126 5.126 8 C -0.067 4.067 9 N -0.263 5.263 10 C -0.064 4.064 11 C -0.157 4.157 12 C -0.157 4.157 13 C 0.011 3.989 14 H 0.046 0.954 15 C -0.644 4.644 16 H 0.071 0.929 17 C -0.167 4.167 18 N -0.535 5.535 19 Si 0.866 3.134 20 H -0.215 1.215 21 H -0.203 1.203 22 H -0.209 1.209 23 C -0.053 4.053 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.045 0.955 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.042 0.958 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -5.770 -11.856 -8.018 15.432 hybrid contribution 1.960 -0.787 -0.557 2.185 sum -3.809 -12.643 -8.575 15.744 Atomic orbital electron populations 1.21777 0.94296 1.01703 1.01956 1.21179 0.97045 1.00290 0.92361 0.90015 1.21580 1.01694 0.99284 0.92372 1.19467 1.02944 0.98885 0.85743 1.29406 0.93197 0.93603 0.94478 1.81221 1.09615 1.09886 1.11898 1.22068 0.97285 0.96958 0.90439 1.62011 1.58968 1.04396 1.00939 1.21967 0.97867 0.95912 0.90647 1.21672 1.00798 0.97701 0.95575 1.22024 0.99063 0.93735 1.00895 1.18949 0.96668 0.93808 0.89508 0.95427 1.21894 1.19469 1.00006 1.23075 0.92855 1.25691 1.04384 0.93015 0.93631 1.70849 1.05178 1.37278 1.40168 0.84114 0.76288 0.76209 0.76748 1.21473 1.20280 1.20940 1.22174 0.94659 0.87794 1.00626 0.93323 0.93272 0.90903 0.91257 0.91144 0.86987 0.87136 0.95533 0.91529 0.92132 0.95776 0.91923 0.93071 0.93500 0.92610 0.92230 0.91468 0.96234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.87 37.16 0.33 -1.07 16 2 C -0.09 -0.92 2.31 -90.62 -0.21 -1.13 16 3 H 0.08 0.95 6.25 -51.93 -0.32 0.62 16 4 C -0.11 -0.87 4.64 -26.73 -0.12 -0.99 16 5 C -0.03 -0.20 5.46 -29.52 -0.16 -0.37 16 6 C 0.21 2.08 15.43 -20.76 -0.32 1.76 16 7 N -0.45 -5.87 18.54 42.16 0.78 -5.09 16 8 C 0.06 0.75 4.35 -3.82 -0.02 0.74 16 9 N -0.54 -8.51 4.16 -234.67 -0.98 -9.49 16 10 C 0.06 0.99 5.46 -3.83 -0.02 0.97 16 11 C -0.12 -2.04 6.09 -26.65 -0.16 -2.20 16 12 C -0.12 -2.53 5.00 -26.61 -0.13 -2.66 16 13 C 0.03 0.68 1.86 -91.69 -0.17 0.51 16 14 H 0.03 0.65 6.70 -51.93 -0.35 0.30 16 15 C -0.61 -16.47 8.76 -34.44 -0.30 -16.77 16 16 H 0.05 1.56 7.99 -52.48 -0.42 1.14 16 17 C 0.04 1.09 5.27 -17.82 -0.09 0.99 16 18 N -0.90 -27.17 13.69 55.43 0.76 -26.41 16 19 Si 1.04 24.75 26.56 -169.99 -4.52 20.23 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.15 5.99 56.52 0.34 -5.81 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 C 0.07 1.43 4.52 -3.84 -0.02 1.41 16 24 H 0.05 0.39 6.39 -51.93 -0.33 0.06 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.92 7.85 -51.93 -0.41 0.52 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.11 0.58 6.48 -51.93 -0.34 0.24 16 30 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 32 H 0.07 0.74 7.98 -51.93 -0.41 0.33 16 33 H 0.06 0.80 8.01 -51.93 -0.42 0.39 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.06 1.26 5.52 -51.93 -0.29 0.97 16 39 H 0.27 8.04 8.73 -40.82 -0.36 7.68 16 40 H 0.07 1.26 6.15 -51.93 -0.32 0.94 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 320.65 15.07 4.83 4.83 Total: -1.00 -30.48 320.65 -7.57 -38.05 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -7.05 Total: -3.31 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -1.40 Total: -18.81 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.56 Total: -40.99 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -4.52 Total: 20.23 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.48 -7.57 -38.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602705802.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.101 kcal (2) G-P(sol) polarization free energy of solvation -30.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds