Wall clock time and date at job start Sun Mar 29 2020 23:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46858 * 2 1 4 4 C 1.53001 * 109.47368 * 119.99517 * 2 1 3 5 5 C 1.53003 * 109.47063 * 295.00452 * 4 2 1 6 6 C 1.47201 * 109.46927 * 179.97438 * 5 4 2 7 7 N 4.86672 * 101.55212 * 104.08281 * 2 1 3 8 8 C 1.53001 * 109.47195 * 239.99848 * 2 1 3 9 9 N 1.46901 * 109.47021 * 175.32612 * 8 2 1 10 10 C 1.46843 * 110.99959 * 288.08374 * 9 8 2 11 11 C 1.53044 * 109.52280 * 174.16350 * 10 9 8 12 12 C 1.53121 * 109.27951 * 59.17529 * 11 10 9 13 13 C 1.53117 * 109.16022 * 302.35038 * 12 11 10 14 14 H 1.09003 * 109.53695 * 297.69398 * 13 12 11 15 15 C 1.50704 * 109.50300 * 177.59613 * 13 12 11 16 16 H 1.08002 * 119.99792 * 245.47266 * 15 13 12 17 17 C 1.37873 * 119.99915 * 65.47083 * 15 13 12 18 18 N 1.31512 * 120.00239 * 8.49731 * 17 15 13 19 19 Si 1.86798 * 119.99867 * 188.49304 * 17 15 13 20 20 H 1.48506 * 109.47243 * 94.99026 * 19 17 15 21 21 H 1.48502 * 109.47589 * 214.99023 * 19 17 15 22 22 H 1.48502 * 109.47288 * 334.99324 * 19 17 15 23 23 C 1.46845 * 111.00007 * 163.87080 * 9 8 2 24 24 H 1.08997 * 109.47124 * 297.04268 * 1 2 3 25 25 H 1.09002 * 109.47453 * 57.04677 * 1 2 3 26 26 H 1.08997 * 109.47053 * 177.04896 * 1 2 3 27 27 H 1.09007 * 109.46929 * 55.00178 * 4 2 1 28 28 H 1.09000 * 109.47201 * 174.99956 * 4 2 1 29 29 H 1.08997 * 109.47060 * 299.99579 * 5 4 2 30 30 H 1.09000 * 109.47517 * 59.99698 * 5 4 2 31 31 H 1.08995 * 109.47044 * 295.32860 * 8 2 1 32 32 H 1.09002 * 109.46938 * 55.32931 * 8 2 1 33 33 H 1.09004 * 109.46498 * 294.17211 * 10 9 8 34 34 H 1.08994 * 109.46699 * 54.14598 * 10 9 8 35 35 H 1.09000 * 109.49775 * 299.23848 * 11 10 9 36 36 H 1.08991 * 109.53684 * 179.13689 * 11 10 9 37 37 H 1.08993 * 109.52321 * 182.44362 * 12 11 10 38 38 H 1.08998 * 109.57472 * 62.28395 * 12 11 10 39 39 H 0.97004 * 120.00387 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.46283 * 305.86138 * 23 9 8 41 41 H 1.09008 * 109.46160 * 65.83315 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 1.6352 0.0691 2.4953 6 6 2.1254 -0.6250 3.6973 7 7 2.5046 -1.1602 4.6248 8 6 2.0400 -0.7213 -1.2492 9 7 3.5047 -0.6243 -1.3069 10 6 3.9288 0.7403 -1.6451 11 6 5.4533 0.8395 -1.5539 12 6 6.0841 -0.1657 -2.5214 13 6 5.5883 -1.5731 -2.1779 14 1 5.9094 -1.8368 -1.1702 15 6 6.1582 -2.5616 -3.1624 16 1 5.5021 -3.0898 -3.8384 17 6 7.5171 -2.7915 -3.2001 18 7 8.2967 -2.2797 -2.2729 19 14 8.2510 -3.8303 -4.5683 20 1 8.7287 -2.9446 -5.6604 21 1 9.3915 -4.6175 -4.0348 22 1 7.2161 -4.7545 -5.0976 23 6 4.0600 -1.6023 -2.2511 24 1 -0.3633 0.4672 0.9153 25 1 -0.3634 0.5590 -0.8623 26 1 -0.3633 -1.0263 -0.0529 27 1 1.6054 -1.7198 1.2953 28 1 3.1264 -0.7993 1.2056 29 1 2.0698 1.0676 2.4494 30 1 0.5489 0.1473 2.5390 31 1 1.7466 -1.7702 -1.2083 32 1 1.6099 -0.2580 -2.1372 33 1 3.6095 0.9790 -2.6597 34 1 3.4766 1.4447 -0.9471 35 1 5.7722 0.6144 -0.5362 36 1 5.7695 1.8481 -1.8197 37 1 7.1695 -0.1291 -2.4283 38 1 5.7976 0.0820 -3.5435 39 1 9.2527 -2.4418 -2.2992 40 1 3.7030 -2.5994 -1.9931 41 1 3.7402 -1.3526 -3.2628 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602705803.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:46 Heat of formation + Delta-G solvation = -2.038972 kcal Electronic energy + Delta-G solvation = -18598.521911 eV Core-core repulsion = 15898.130669 eV Total energy + Delta-G solvation = -2700.391242 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.72271 -37.12655 -35.77583 -33.33377 -31.76202 -30.33646 -29.78493 -26.18004 -24.92652 -24.38098 -21.92865 -21.56630 -19.56925 -18.61089 -17.51607 -16.38767 -15.65904 -15.13539 -14.80606 -14.54785 -14.05677 -13.66078 -13.42503 -13.18744 -13.12771 -12.63005 -12.50576 -12.45625 -12.07535 -12.01672 -11.73236 -11.56252 -11.24291 -10.95932 -10.78686 -10.72909 -10.70128 -10.47970 -10.44998 -10.07859 -9.88994 -9.44761 -8.96170 -8.72579 -8.29012 -7.64286 -5.98853 -4.00912 2.77704 2.80056 3.31541 3.39161 3.41631 3.98473 4.37431 4.54091 4.81636 4.91194 5.07271 5.26533 5.33480 5.36124 5.41800 5.60229 5.62182 5.72563 5.82075 5.87034 5.94037 6.03656 6.06741 6.08155 6.25425 6.39904 6.42181 6.49318 6.52215 6.68565 6.72495 6.95727 7.19824 7.34284 7.58151 7.66768 7.76529 7.82776 8.03429 8.13531 8.49377 9.03826 9.62425 11.10156 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.024630 B = 0.004914 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.530330 B = 5696.103474 C = 6089.417814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.084 4.084 3 H 0.074 0.926 4 C -0.106 4.106 5 C -0.029 4.029 6 C 0.210 3.790 7 N -0.447 5.447 8 C 0.058 3.942 9 N -0.537 5.537 10 C 0.063 3.937 11 C -0.117 4.117 12 C -0.106 4.106 13 C 0.053 3.947 14 H 0.041 0.959 15 C -0.517 4.517 16 H 0.053 0.947 17 C 0.066 3.934 18 N -0.886 5.886 19 Si 0.886 3.114 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.069 3.931 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.069 0.931 32 H 0.028 0.972 33 H 0.021 0.979 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.045 0.955 37 H 0.072 0.928 38 H 0.031 0.969 39 H 0.259 0.741 40 H 0.059 0.941 41 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.523 7.887 3.423 16.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.103 4.103 3 H 0.093 0.907 4 C -0.145 4.145 5 C -0.069 4.069 6 C -0.108 4.108 7 N -0.124 5.124 8 C -0.071 4.071 9 N -0.261 5.261 10 C -0.065 4.065 11 C -0.155 4.155 12 C -0.144 4.144 13 C 0.035 3.965 14 H 0.059 0.941 15 C -0.556 4.556 16 H 0.071 0.929 17 C -0.136 4.136 18 N -0.524 5.524 19 Si 0.714 3.286 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.058 4.058 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.110 0.890 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.088 0.912 32 H 0.046 0.954 33 H 0.039 0.961 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.091 0.909 38 H 0.050 0.950 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -13.580 6.973 5.338 16.172 hybrid contribution 0.051 -0.145 -2.015 2.021 sum -13.529 6.828 3.324 15.514 Atomic orbital electron populations 1.21914 0.95520 1.01953 1.01536 1.21127 0.94544 1.00038 0.94611 0.90747 1.21541 1.03988 0.98328 0.90655 1.19484 1.02024 0.98916 0.86504 1.29352 0.93312 0.93723 0.94413 1.81216 1.09260 1.09651 1.12277 1.22112 0.89107 1.00270 0.95584 1.61972 1.07141 1.05169 1.51838 1.22042 0.96998 0.89911 0.97564 1.21657 0.93700 0.98717 1.01453 1.21589 1.01573 0.95755 0.95462 1.18669 0.87457 0.92287 0.98128 0.94118 1.21131 0.92126 1.23433 1.18903 0.92896 1.24918 0.97353 0.95784 0.95554 1.69969 1.04578 1.45584 1.32316 0.86687 0.78929 0.80376 0.82642 1.20803 1.21314 1.19942 1.22301 0.98976 0.93287 0.91260 0.92399 0.92855 0.92580 0.91534 0.88992 0.87598 0.87816 0.91203 0.95375 0.96068 0.92181 0.91989 0.93641 0.90938 0.95002 0.93086 0.92255 0.96517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.02 37.16 0.34 -0.77 16 2 C -0.08 -0.80 2.40 -90.62 -0.22 -1.02 16 3 H 0.07 0.69 6.50 -51.93 -0.34 0.36 16 4 C -0.11 -1.05 4.58 -26.73 -0.12 -1.17 16 5 C -0.03 -0.22 5.46 -29.52 -0.16 -0.38 16 6 C 0.21 2.42 15.43 -20.76 -0.32 2.10 16 7 N -0.45 -6.70 18.54 42.15 0.78 -5.92 16 8 C 0.06 0.74 4.37 -3.82 -0.02 0.73 16 9 N -0.54 -8.92 3.97 -234.67 -0.93 -9.85 16 10 C 0.06 1.00 5.30 -3.83 -0.02 0.98 16 11 C -0.12 -2.16 6.09 -26.65 -0.16 -2.32 16 12 C -0.11 -2.41 5.09 -26.61 -0.14 -2.55 16 13 C 0.05 1.31 2.13 -91.69 -0.20 1.11 16 14 H 0.04 1.12 8.10 -51.93 -0.42 0.70 16 15 C -0.52 -14.06 8.49 -34.44 -0.29 -14.35 16 16 H 0.05 1.42 7.76 -52.49 -0.41 1.02 16 17 C 0.07 1.82 5.24 -17.82 -0.09 1.72 16 18 N -0.89 -25.47 12.13 55.43 0.67 -24.80 16 19 Si 0.89 21.22 29.55 -169.99 -5.02 16.20 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 23 C 0.07 1.40 4.67 -3.84 -0.02 1.38 16 24 H 0.06 0.32 6.43 -51.93 -0.33 -0.01 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.09 1.19 7.61 -51.93 -0.40 0.79 16 29 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.10 0.53 6.50 -51.93 -0.34 0.19 16 31 H 0.07 0.91 7.87 -51.93 -0.41 0.50 16 32 H 0.03 0.36 8.05 -51.93 -0.42 -0.06 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.80 6.43 -51.93 -0.33 0.47 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 1.86 6.93 -51.93 -0.36 1.50 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.06 1.21 7.96 -51.93 -0.41 0.80 16 41 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 LS Contribution 325.50 15.07 4.91 4.91 Total: -1.00 -30.06 325.50 -8.12 -38.18 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -7.11 Total: -4.16 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -1.42 Total: -14.55 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.52 Total: -40.57 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.06 -8.12 -38.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602705803.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.139 kcal (2) G-P(sol) polarization free energy of solvation -30.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds