Wall clock time and date at job start Sun Mar 29 2020 23:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46858 * 2 1 4 4 C 1.53001 * 109.47368 * 119.99517 * 2 1 3 5 5 C 1.53003 * 109.47063 * 295.00452 * 4 2 1 6 6 C 1.47201 * 109.46927 * 179.97438 * 5 4 2 7 7 N 4.86672 * 101.55212 * 104.08281 * 2 1 3 8 8 C 1.53001 * 109.47195 * 239.99848 * 2 1 3 9 9 N 1.46901 * 109.47021 * 175.32612 * 8 2 1 10 10 C 1.46843 * 110.99959 * 288.08374 * 9 8 2 11 11 C 1.53044 * 109.52280 * 174.16350 * 10 9 8 12 12 C 1.53121 * 109.27951 * 59.17529 * 11 10 9 13 13 C 1.53117 * 109.16022 * 302.35038 * 12 11 10 14 14 H 1.09003 * 109.53695 * 297.69398 * 13 12 11 15 15 C 1.50704 * 109.50300 * 177.59613 * 13 12 11 16 16 H 1.08002 * 119.99792 * 245.47266 * 15 13 12 17 17 C 1.37873 * 119.99915 * 65.47083 * 15 13 12 18 18 N 1.31512 * 120.00239 * 8.49731 * 17 15 13 19 19 Si 1.86798 * 119.99867 * 188.49304 * 17 15 13 20 20 H 1.48506 * 109.47243 * 94.99026 * 19 17 15 21 21 H 1.48502 * 109.47589 * 214.99023 * 19 17 15 22 22 H 1.48502 * 109.47288 * 334.99324 * 19 17 15 23 23 C 1.46845 * 111.00007 * 163.87080 * 9 8 2 24 24 H 1.08997 * 109.47124 * 297.04268 * 1 2 3 25 25 H 1.09002 * 109.47453 * 57.04677 * 1 2 3 26 26 H 1.08997 * 109.47053 * 177.04896 * 1 2 3 27 27 H 1.09007 * 109.46929 * 55.00178 * 4 2 1 28 28 H 1.09000 * 109.47201 * 174.99956 * 4 2 1 29 29 H 1.08997 * 109.47060 * 299.99579 * 5 4 2 30 30 H 1.09000 * 109.47517 * 59.99698 * 5 4 2 31 31 H 1.08995 * 109.47044 * 295.32860 * 8 2 1 32 32 H 1.09002 * 109.46938 * 55.32931 * 8 2 1 33 33 H 1.09004 * 109.46498 * 294.17211 * 10 9 8 34 34 H 1.08994 * 109.46699 * 54.14598 * 10 9 8 35 35 H 1.09000 * 109.49775 * 299.23848 * 11 10 9 36 36 H 1.08991 * 109.53684 * 179.13689 * 11 10 9 37 37 H 1.08993 * 109.52321 * 182.44362 * 12 11 10 38 38 H 1.08998 * 109.57472 * 62.28395 * 12 11 10 39 39 H 0.97004 * 120.00387 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.46283 * 305.86138 * 23 9 8 41 41 H 1.09008 * 109.46160 * 65.83315 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 1.6352 0.0691 2.4953 6 6 2.1254 -0.6250 3.6973 7 7 2.5046 -1.1602 4.6248 8 6 2.0400 -0.7213 -1.2492 9 7 3.5047 -0.6243 -1.3069 10 6 3.9288 0.7403 -1.6451 11 6 5.4533 0.8395 -1.5539 12 6 6.0841 -0.1657 -2.5214 13 6 5.5883 -1.5731 -2.1779 14 1 5.9094 -1.8368 -1.1702 15 6 6.1582 -2.5616 -3.1624 16 1 5.5021 -3.0898 -3.8384 17 6 7.5171 -2.7915 -3.2001 18 7 8.2967 -2.2797 -2.2729 19 14 8.2510 -3.8303 -4.5683 20 1 8.7287 -2.9446 -5.6604 21 1 9.3915 -4.6175 -4.0348 22 1 7.2161 -4.7545 -5.0976 23 6 4.0600 -1.6023 -2.2511 24 1 -0.3633 0.4672 0.9153 25 1 -0.3634 0.5590 -0.8623 26 1 -0.3633 -1.0263 -0.0529 27 1 1.6054 -1.7198 1.2953 28 1 3.1264 -0.7993 1.2056 29 1 2.0698 1.0676 2.4494 30 1 0.5489 0.1473 2.5390 31 1 1.7466 -1.7702 -1.2083 32 1 1.6099 -0.2580 -2.1372 33 1 3.6095 0.9790 -2.6597 34 1 3.4766 1.4447 -0.9471 35 1 5.7722 0.6144 -0.5362 36 1 5.7695 1.8481 -1.8197 37 1 7.1695 -0.1291 -2.4283 38 1 5.7976 0.0820 -3.5435 39 1 9.2527 -2.4418 -2.2992 40 1 3.7030 -2.5994 -1.9931 41 1 3.7402 -1.3526 -3.2628 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602705803.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:45 Heat of formation + Delta-G solvation = -19.436620 kcal Electronic energy + Delta-G solvation = -18599.276329 eV Core-core repulsion = 15898.130669 eV Total energy + Delta-G solvation = -2701.145661 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.01979 -38.15921 -36.88560 -35.06254 -33.27645 -31.66819 -31.10312 -27.17215 -26.83427 -25.35449 -23.38962 -23.12878 -20.49802 -20.26643 -18.50054 -18.23358 -16.82799 -16.47593 -16.14987 -15.72401 -15.38727 -14.97120 -14.70140 -14.46981 -14.34817 -14.13255 -13.79155 -13.63588 -13.37815 -12.99871 -12.83918 -12.77454 -12.72496 -12.55758 -12.38200 -12.10062 -11.86349 -11.67687 -11.60521 -11.37581 -11.28859 -11.18782 -10.67651 -10.60018 -10.39216 -8.98082 -8.11647 -6.20817 1.39700 1.40822 1.50929 1.87978 1.92343 2.42810 3.18740 3.20339 3.23559 3.99178 4.18178 4.27306 4.31438 4.36363 4.43343 4.60395 4.68833 4.71322 4.78899 4.81967 4.89162 4.93042 4.96575 4.99142 5.09053 5.19858 5.24422 5.26534 5.33085 5.41910 5.45722 5.50973 5.64491 5.69293 5.72601 6.00134 6.09774 6.23597 6.50479 6.53082 6.72483 6.93761 7.46245 8.96812 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.024630 B = 0.004914 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.530330 B = 5696.103474 C = 6089.417814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.073 4.073 3 H 0.087 0.913 4 C -0.104 4.104 5 C -0.021 4.021 6 C 0.235 3.765 7 N -0.518 5.518 8 C 0.055 3.945 9 N -0.544 5.544 10 C 0.067 3.933 11 C -0.111 4.111 12 C -0.099 4.099 13 C 0.051 3.949 14 H -0.002 1.002 15 C -0.537 4.537 16 H 0.050 0.950 17 C 0.016 3.984 18 N -0.918 5.918 19 Si 0.949 3.051 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.267 1.267 23 C 0.083 3.917 24 H 0.084 0.916 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.133 0.867 30 H 0.142 0.858 31 H 0.063 0.937 32 H 0.036 0.964 33 H 0.024 0.976 34 H 0.100 0.900 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.034 0.966 38 H 0.027 0.973 39 H 0.260 0.740 40 H 0.051 0.949 41 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.908 9.542 2.925 19.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.092 4.092 3 H 0.105 0.895 4 C -0.143 4.143 5 C -0.060 4.060 6 C -0.081 4.081 7 N -0.196 5.196 8 C -0.073 4.073 9 N -0.269 5.269 10 C -0.060 4.060 11 C -0.149 4.149 12 C -0.138 4.138 13 C 0.033 3.967 14 H 0.016 0.984 15 C -0.575 4.575 16 H 0.068 0.932 17 C -0.183 4.183 18 N -0.557 5.557 19 Si 0.775 3.225 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.191 1.191 23 C -0.045 4.045 24 H 0.103 0.897 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.151 0.849 30 H 0.159 0.841 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.042 0.958 34 H 0.118 0.882 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.053 0.947 38 H 0.046 0.954 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -15.988 8.633 4.836 18.803 hybrid contribution 0.785 -0.670 -1.882 2.147 sum -15.203 7.964 2.954 17.415 Atomic orbital electron populations 1.21894 0.93174 1.02255 1.03174 1.21063 0.96260 0.99784 0.92127 0.89466 1.21439 1.01754 0.98820 0.92294 1.19747 1.04277 0.98901 0.83122 1.30146 0.91488 0.92264 0.94225 1.81240 1.11716 1.11906 1.14744 1.22265 0.86342 1.00776 0.97882 1.61914 1.09788 1.04837 1.50329 1.22062 0.94957 0.90115 0.98915 1.21578 0.95668 0.98420 0.99218 1.21408 0.99494 0.96327 0.96522 1.18581 0.90481 0.92730 0.94955 0.98384 1.21549 0.92600 1.24033 1.19360 0.93151 1.25693 0.97836 0.97128 0.97627 1.70102 1.04702 1.46970 1.33944 0.85687 0.78111 0.78914 0.79825 1.20104 1.21111 1.19149 1.21928 0.96160 0.94350 0.92048 0.89738 0.92410 0.92900 0.92183 0.92466 0.84910 0.84056 0.91858 0.94602 0.95784 0.88217 0.93223 0.91199 0.94676 0.95376 0.93149 0.93085 0.96859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.02 71.98 0.65 -0.82 16 2 C -0.07 -1.12 2.40 -10.79 -0.03 -1.15 16 3 H 0.09 1.16 6.50 -2.39 -0.02 1.15 16 4 C -0.10 -1.81 4.58 30.60 0.14 -1.67 16 5 C -0.02 -0.24 5.46 28.79 0.16 -0.08 16 6 C 0.23 5.06 15.43 89.44 1.38 6.44 16 7 N -0.52 -15.51 18.54 20.01 0.37 -15.14 16 8 C 0.05 1.29 4.37 86.30 0.38 1.67 16 9 N -0.54 -17.49 3.97 -896.36 -3.56 -21.05 16 10 C 0.07 1.97 5.30 86.33 0.46 2.43 16 11 C -0.11 -4.00 6.09 30.65 0.19 -3.81 16 12 C -0.10 -4.65 5.09 30.67 0.16 -4.50 16 13 C 0.05 2.61 2.13 -11.49 -0.02 2.59 16 14 H 0.00 -0.12 8.10 -2.39 -0.02 -0.14 16 15 C -0.54 -30.11 8.49 25.60 0.22 -29.89 16 16 H 0.05 2.77 7.76 -2.91 -0.02 2.75 16 17 C 0.02 0.91 5.24 84.65 0.44 1.35 16 18 N -0.92 -54.72 12.13 21.45 0.26 -54.46 16 19 Si 0.95 44.29 29.55 68.60 2.03 46.31 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 21 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 C 0.08 3.42 4.67 86.32 0.40 3.82 16 24 H 0.08 0.43 6.43 -2.39 -0.02 0.42 16 25 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.06 1.42 7.61 -2.39 -0.02 1.41 16 29 H 0.13 0.91 8.14 -2.39 -0.02 0.90 16 30 H 0.14 0.64 6.50 -2.39 -0.02 0.62 16 31 H 0.06 1.57 7.87 -2.39 -0.02 1.55 16 32 H 0.04 0.81 8.05 -2.39 -0.02 0.79 16 33 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.10 2.20 6.43 -2.39 -0.02 2.18 16 35 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.03 1.87 6.93 -2.39 -0.02 1.86 16 38 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 40 H 0.05 2.14 7.96 -2.39 -0.02 2.12 16 41 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 Total: -1.00 -69.84 325.50 4.60 -65.24 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: 0.98 Total: 2.71 kcal Atomic # 6 Polarization: -28.14 SS G_CDS: 4.52 Total: -23.62 kcal Atomic # 7 Polarization: -87.72 SS G_CDS: -2.93 Total: -90.65 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -69.84 4.60 -65.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602705803.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.804 kcal (2) G-P(sol) polarization free energy of solvation -69.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds