Wall clock time and date at job start Sun Mar 29 2020 22:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.47207 * 109.46794 * 2 1 4 4 C 2.64609 * 109.46712 * 359.97438 * 2 1 3 5 5 C 4.11807 * 109.46726 * 359.97438 * 2 1 3 6 6 H 1.09000 * 109.47088 * 73.41236 * 5 4 3 7 7 C 1.53000 * 109.46905 * 193.40712 * 5 4 3 8 8 N 1.46896 * 109.47402 * 313.40811 * 5 4 3 9 9 C 1.46961 * 110.99735 * 59.99900 * 8 5 4 10 10 C 1.53059 * 109.36302 * 183.18721 * 9 8 5 11 11 N 1.46952 * 109.36370 * 301.60193 * 10 9 8 12 12 C 1.46906 * 110.99889 * 183.18679 * 11 10 9 13 13 C 1.50701 * 109.46965 * 170.00017 * 12 11 10 14 14 H 1.08005 * 120.00268 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99915 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99666 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00290 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47128 * 89.99741 * 17 15 13 19 19 H 1.48501 * 109.47251 * 209.99489 * 17 15 13 20 20 H 1.48497 * 109.47002 * 329.99797 * 17 15 13 21 21 C 1.46961 * 110.88410 * 59.32054 * 11 10 9 22 22 C 1.46955 * 111.00246 * 183.80054 * 8 5 4 23 23 H 1.09001 * 109.46779 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47425 * 299.99952 * 1 2 3 25 25 H 1.09000 * 109.47125 * 60.00181 * 1 2 3 26 26 H 1.08992 * 109.47430 * 240.00053 * 2 1 3 27 27 H 1.08995 * 109.47455 * 119.99504 * 2 1 3 28 28 H 1.09002 * 109.47316 * 300.00118 * 7 5 4 29 29 H 1.09000 * 109.46820 * 60.00359 * 7 5 4 30 30 H 1.09001 * 109.47202 * 180.02562 * 7 5 4 31 31 H 1.09003 * 109.48904 * 63.22353 * 9 8 5 32 32 H 1.08997 * 109.51213 * 303.16639 * 9 8 5 33 33 H 1.08999 * 109.48651 * 181.63251 * 10 9 8 34 34 H 1.08996 * 109.48556 * 61.57139 * 10 9 8 35 35 H 1.08993 * 109.47164 * 289.99960 * 12 11 10 36 36 H 1.08996 * 109.46920 * 49.99994 * 12 11 10 37 37 H 0.97001 * 119.99343 * 180.02562 * 16 15 13 38 38 H 1.09003 * 109.48904 * 60.64354 * 21 11 10 39 39 H 1.09002 * 109.49205 * 180.70887 * 21 11 10 40 40 H 1.09008 * 109.48713 * 296.78155 * 22 8 5 41 41 H 1.09002 * 109.48661 * 56.82117 * 22 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0207 1.3879 0.0000 4 6 2.4119 2.4948 -0.0011 5 6 2.9025 3.8826 -0.0017 6 1 3.3000 4.1270 -0.9868 7 6 1.7495 4.8312 0.3325 8 7 3.9631 4.0276 1.0042 9 6 5.0897 3.1294 0.7147 10 6 6.1353 3.2525 1.8257 11 7 6.5876 4.6477 1.9167 12 6 7.6483 4.7926 2.9227 13 6 8.2548 6.1683 2.8185 14 1 7.8891 6.8651 2.0788 15 6 9.2771 6.5370 3.6670 16 7 9.7227 5.6883 4.5675 17 14 10.0284 8.2425 3.5384 18 1 9.2894 9.1771 4.4249 19 1 11.4531 8.1884 3.9540 20 1 9.9399 8.7178 2.1344 21 6 5.4610 5.5459 2.2062 22 6 4.4155 5.4228 1.0953 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 0.9624 4.7237 -0.4139 29 1 1.3519 4.5868 1.3176 30 1 2.1126 5.8590 0.3316 31 1 5.5388 3.4053 -0.2395 32 1 4.7319 2.1011 0.6644 33 1 6.9850 2.6088 1.5983 34 1 5.6939 2.9506 2.7754 35 1 7.2261 4.6562 3.9182 36 1 8.4190 4.0417 2.7488 37 1 10.4417 5.9479 5.1646 38 1 5.0119 5.2700 3.1603 39 1 5.8192 6.5741 2.2563 40 1 4.8569 5.7247 0.1454 41 1 3.5657 6.0665 1.3222 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603017698.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:58 Heat of formation + Delta-G solvation = 50.775188 kcal Electronic energy + Delta-G solvation = -18191.875660 eV Core-core repulsion = 15493.774612 eV Total energy + Delta-G solvation = -2698.101048 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.05511 -36.12344 -34.79935 -32.81195 -31.50258 -30.73157 -29.43569 -27.44157 -25.06031 -24.27985 -23.03338 -21.96173 -21.19604 -19.17464 -16.95320 -16.27469 -16.18696 -15.06648 -14.84651 -14.66466 -14.49154 -14.20596 -13.86085 -13.52414 -13.19451 -12.99597 -12.63008 -12.19207 -12.02192 -11.95542 -11.76558 -11.73775 -11.32309 -11.13787 -10.84630 -10.73453 -10.63395 -10.40067 -10.33795 -9.87495 -9.73236 -9.64010 -9.15402 -8.42469 -8.12973 -7.20012 -6.00961 -4.02404 2.65017 2.74437 3.32587 3.38730 3.43005 4.04093 4.25258 4.43715 4.95057 4.98096 5.03514 5.07414 5.14750 5.26406 5.33584 5.35086 5.50131 5.58367 5.61788 5.72059 5.75995 5.79270 5.85307 5.90950 5.92387 6.00040 6.05388 6.17094 6.25642 6.47818 6.62724 6.70698 7.20531 7.22199 7.37858 7.40386 7.67833 7.81935 8.11444 8.23600 8.57512 9.05173 9.61730 11.09979 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.043614 B = 0.003966 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.841623 B = 7058.232741 C = 7509.152568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.008 4.008 3 C -0.189 4.189 4 C -0.161 4.161 5 C 0.192 3.808 6 H 0.059 0.941 7 C -0.142 4.142 8 N -0.532 5.532 9 C 0.062 3.938 10 C 0.058 3.942 11 N -0.539 5.539 12 C 0.193 3.807 13 C -0.507 4.507 14 H 0.063 0.937 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.898 3.102 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.273 1.273 21 C 0.068 3.932 22 C 0.055 3.945 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.039 0.961 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.030 0.970 35 H -0.008 1.008 36 H 0.029 0.971 37 H 0.261 0.739 38 H 0.029 0.971 39 H 0.088 0.912 40 H 0.040 0.960 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.594 -7.085 -9.172 20.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.044 4.044 3 C -0.190 4.190 4 C -0.161 4.161 5 C 0.085 3.915 6 H 0.076 0.924 7 C -0.199 4.199 8 N -0.258 5.258 9 C -0.066 4.066 10 C -0.071 4.071 11 N -0.264 5.264 12 C 0.068 3.932 13 C -0.545 4.545 14 H 0.081 0.919 15 C -0.147 4.147 16 N -0.538 5.538 17 Si 0.725 3.275 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.061 4.061 22 C -0.073 4.073 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.100 0.900 27 H 0.103 0.897 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.009 0.991 36 H 0.048 0.952 37 H 0.071 0.929 38 H 0.047 0.953 39 H 0.106 0.894 40 H 0.058 0.942 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.442 -7.083 -9.023 20.048 hybrid contribution 0.575 0.802 0.075 0.989 sum -15.867 -6.282 -8.949 19.269 Atomic orbital electron populations 1.21724 0.94306 1.01952 1.02452 1.18582 0.95661 0.87154 1.03015 1.22270 1.00728 0.94278 1.01712 1.22043 0.99553 0.93866 1.00647 1.18487 0.92550 0.86018 0.94451 0.92395 1.21862 0.96812 0.98685 1.02558 1.62243 1.10101 1.07381 1.46087 1.22162 0.90372 0.96111 0.97954 1.22051 0.96139 0.92336 0.96592 1.62294 1.09830 1.03104 1.51197 1.19700 0.88215 0.97787 0.87463 1.21158 1.17622 0.98637 1.17116 0.91915 1.24998 0.96807 0.97509 0.95343 1.69968 1.28125 1.35142 1.20601 0.86504 0.78333 0.84260 0.78355 1.20733 1.21276 1.19796 1.21992 0.90027 0.99135 0.94920 1.22359 0.97680 0.87867 0.99367 0.91904 0.92320 0.92500 0.89990 0.89699 0.92154 0.91420 0.91278 0.94314 0.91204 0.91027 0.95171 0.99062 0.95248 0.92943 0.95277 0.89420 0.94159 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.87 37.16 0.37 -0.73 16 2 C -0.01 -0.07 6.42 -29.51 -0.19 -0.26 16 3 C -0.19 -2.40 13.34 -37.12 -0.50 -2.89 16 4 C -0.16 -2.24 11.29 -37.12 -0.42 -2.66 16 5 C 0.19 2.59 2.53 -70.50 -0.18 2.41 16 6 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 7 C -0.14 -1.58 8.80 37.16 0.33 -1.26 16 8 N -0.53 -8.46 4.56 -229.86 -1.05 -9.51 16 9 C 0.06 1.03 5.38 -3.76 -0.02 1.01 16 10 C 0.06 1.12 5.61 -3.77 -0.02 1.10 16 11 N -0.54 -12.06 4.70 -235.91 -1.11 -13.16 16 12 C 0.19 5.16 4.72 -4.97 -0.02 5.14 16 13 C -0.51 -14.36 8.47 -34.44 -0.29 -14.65 16 14 H 0.06 1.75 7.13 -52.48 -0.37 1.38 16 15 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 17 Si 0.90 21.74 29.54 -169.99 -5.02 16.71 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 C 0.07 1.36 5.43 -3.77 -0.02 1.34 16 22 C 0.05 0.88 5.23 -3.77 -0.02 0.86 16 23 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.71 6.28 -51.93 -0.33 0.38 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.10 6.99 -51.93 -0.36 0.74 16 33 H 0.07 1.35 8.07 -51.93 -0.42 0.93 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 35 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 36 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 1.84 6.79 -51.93 -0.35 1.49 16 40 H 0.04 0.66 8.14 -51.92 -0.42 0.23 16 41 H 0.08 1.06 6.06 -51.93 -0.31 0.75 16 LS Contribution 329.44 15.07 4.96 4.96 Total: -1.00 -30.86 329.44 -9.76 -40.61 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -7.20 Total: -4.23 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -1.08 Total: -9.11 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: -1.42 Total: -48.94 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.86 -9.76 -40.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603017698.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.389 kcal (2) G-P(sol) polarization free energy of solvation -30.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds