Wall clock time and date at job start Sun Mar 29 2020 22:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.47207 * 109.46794 * 2 1 4 4 C 2.64609 * 109.46712 * 359.97438 * 2 1 3 5 5 C 4.11807 * 109.46726 * 359.97438 * 2 1 3 6 6 H 1.09000 * 109.47088 * 73.41236 * 5 4 3 7 7 C 1.53000 * 109.46905 * 193.40712 * 5 4 3 8 8 N 1.46896 * 109.47402 * 313.40811 * 5 4 3 9 9 C 1.46961 * 110.99735 * 59.99900 * 8 5 4 10 10 C 1.53059 * 109.36302 * 183.18721 * 9 8 5 11 11 N 1.46952 * 109.36370 * 301.60193 * 10 9 8 12 12 C 1.46906 * 110.99889 * 183.18679 * 11 10 9 13 13 C 1.50701 * 109.46965 * 170.00017 * 12 11 10 14 14 H 1.08005 * 120.00268 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99915 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99666 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00290 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47128 * 89.99741 * 17 15 13 19 19 H 1.48501 * 109.47251 * 209.99489 * 17 15 13 20 20 H 1.48497 * 109.47002 * 329.99797 * 17 15 13 21 21 C 1.46961 * 110.88410 * 59.32054 * 11 10 9 22 22 C 1.46955 * 111.00246 * 183.80054 * 8 5 4 23 23 H 1.09001 * 109.46779 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47425 * 299.99952 * 1 2 3 25 25 H 1.09000 * 109.47125 * 60.00181 * 1 2 3 26 26 H 1.08992 * 109.47430 * 240.00053 * 2 1 3 27 27 H 1.08995 * 109.47455 * 119.99504 * 2 1 3 28 28 H 1.09002 * 109.47316 * 300.00118 * 7 5 4 29 29 H 1.09000 * 109.46820 * 60.00359 * 7 5 4 30 30 H 1.09001 * 109.47202 * 180.02562 * 7 5 4 31 31 H 1.09003 * 109.48904 * 63.22353 * 9 8 5 32 32 H 1.08997 * 109.51213 * 303.16639 * 9 8 5 33 33 H 1.08999 * 109.48651 * 181.63251 * 10 9 8 34 34 H 1.08996 * 109.48556 * 61.57139 * 10 9 8 35 35 H 1.08993 * 109.47164 * 289.99960 * 12 11 10 36 36 H 1.08996 * 109.46920 * 49.99994 * 12 11 10 37 37 H 0.97001 * 119.99343 * 180.02562 * 16 15 13 38 38 H 1.09003 * 109.48904 * 60.64354 * 21 11 10 39 39 H 1.09002 * 109.49205 * 180.70887 * 21 11 10 40 40 H 1.09008 * 109.48713 * 296.78155 * 22 8 5 41 41 H 1.09002 * 109.48661 * 56.82117 * 22 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0207 1.3879 0.0000 4 6 2.4119 2.4948 -0.0011 5 6 2.9025 3.8826 -0.0017 6 1 3.3000 4.1270 -0.9868 7 6 1.7495 4.8312 0.3325 8 7 3.9631 4.0276 1.0042 9 6 5.0897 3.1294 0.7147 10 6 6.1353 3.2525 1.8257 11 7 6.5876 4.6477 1.9167 12 6 7.6483 4.7926 2.9227 13 6 8.2548 6.1683 2.8185 14 1 7.8891 6.8651 2.0788 15 6 9.2771 6.5370 3.6670 16 7 9.7227 5.6883 4.5675 17 14 10.0284 8.2425 3.5384 18 1 9.2894 9.1771 4.4249 19 1 11.4531 8.1884 3.9540 20 1 9.9399 8.7178 2.1344 21 6 5.4610 5.5459 2.2062 22 6 4.4155 5.4228 1.0953 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 0.9624 4.7237 -0.4139 29 1 1.3519 4.5868 1.3176 30 1 2.1126 5.8590 0.3316 31 1 5.5388 3.4053 -0.2395 32 1 4.7319 2.1011 0.6644 33 1 6.9850 2.6088 1.5983 34 1 5.6939 2.9506 2.7754 35 1 7.2261 4.6562 3.9182 36 1 8.4190 4.0417 2.7488 37 1 10.4417 5.9479 5.1646 38 1 5.0119 5.2700 3.1603 39 1 5.8192 6.5741 2.2563 40 1 4.8569 5.7247 0.1454 41 1 3.5657 6.0665 1.3222 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603017698.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:57 Heat of formation + Delta-G solvation = 30.879112 kcal Electronic energy + Delta-G solvation = -18192.738419 eV Core-core repulsion = 15493.774612 eV Total energy + Delta-G solvation = -2698.963807 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.44971 -37.57039 -35.75672 -34.75378 -32.83609 -32.12129 -30.52107 -29.25485 -26.64645 -25.37291 -24.25345 -23.57623 -22.65023 -20.69742 -18.51097 -17.98079 -17.43527 -16.57553 -15.98924 -15.87266 -15.80887 -15.52363 -15.42660 -15.18479 -14.59953 -14.08904 -13.89303 -13.53490 -13.47032 -13.25351 -12.80574 -12.73325 -12.64399 -12.49564 -12.45948 -12.32168 -12.25569 -12.12955 -11.94626 -11.51491 -11.20369 -10.79022 -10.68347 -10.61888 -9.39094 -9.06696 -8.21255 -6.32061 1.41344 1.43142 1.54840 1.63641 1.77574 2.40125 2.97202 3.10907 3.23201 3.26954 3.91586 4.07128 4.14943 4.20271 4.32581 4.36324 4.38104 4.43998 4.45804 4.52199 4.60304 4.73142 4.78938 4.85497 4.91544 4.97643 5.00851 5.04533 5.13421 5.15027 5.19959 5.24915 5.28745 5.34647 5.62840 5.96231 5.99817 6.06556 6.31763 6.58298 6.70680 6.83698 7.37858 8.90321 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.043614 B = 0.003966 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.841623 B = 7058.232741 C = 7509.152568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.014 4.014 3 C -0.182 4.182 4 C -0.200 4.200 5 C 0.193 3.807 6 H 0.065 0.935 7 C -0.137 4.137 8 N -0.543 5.543 9 C 0.075 3.925 10 C 0.058 3.942 11 N -0.544 5.544 12 C 0.209 3.791 13 C -0.523 4.523 14 H 0.065 0.935 15 C 0.000 4.000 16 N -0.936 5.936 17 Si 0.973 3.027 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.263 1.263 21 C 0.068 3.932 22 C 0.067 3.933 23 H 0.084 0.916 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.039 0.961 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.018 0.982 35 H -0.041 1.041 36 H 0.003 0.997 37 H 0.265 0.735 38 H 0.014 0.986 39 H 0.075 0.925 40 H 0.043 0.957 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.957 -6.567 -10.594 21.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.050 4.050 3 C -0.184 4.184 4 C -0.201 4.201 5 C 0.087 3.913 6 H 0.082 0.918 7 C -0.194 4.194 8 N -0.269 5.269 9 C -0.053 4.053 10 C -0.071 4.071 11 N -0.269 5.269 12 C 0.082 3.918 13 C -0.561 4.561 14 H 0.084 0.916 15 C -0.198 4.198 16 N -0.577 5.577 17 Si 0.797 3.203 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.187 1.187 21 C -0.060 4.060 22 C -0.060 4.060 23 H 0.102 0.898 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.117 0.883 27 H 0.111 0.889 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.036 0.964 35 H -0.023 1.023 36 H 0.021 0.979 37 H 0.073 0.927 38 H 0.033 0.967 39 H 0.093 0.907 40 H 0.061 0.939 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -17.836 -6.573 -10.464 21.699 hybrid contribution 0.949 0.526 0.527 1.206 sum -16.887 -6.048 -9.937 20.506 Atomic orbital electron populations 1.21703 0.93097 1.03256 1.01980 1.18856 0.96679 0.85297 1.04188 1.23165 0.99719 0.95120 1.00366 1.22328 1.00963 0.94605 1.02169 1.18560 0.92208 0.86717 0.93860 0.91783 1.21845 0.96417 0.98536 1.02578 1.62202 1.10180 1.06840 1.47699 1.21981 0.89879 0.97103 0.96338 1.22109 0.97072 0.90601 0.97314 1.62242 1.10238 1.05207 1.49193 1.19356 0.88773 0.96687 0.86941 1.21444 1.18071 0.99237 1.17380 0.91641 1.25970 0.97157 1.01988 0.94693 1.70104 1.28700 1.37458 1.21409 0.85329 0.77344 0.78745 0.78876 1.19668 1.20786 1.18731 1.22009 0.90142 0.97766 0.96098 1.22238 0.97359 0.88793 0.97658 0.89752 0.93162 0.92595 0.88270 0.88901 0.90427 0.92298 0.90238 0.94234 0.90110 0.91099 0.96381 1.02343 0.97931 0.92653 0.96721 0.90670 0.93855 0.87610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.87 71.98 0.71 -1.10 16 2 C -0.01 -0.22 6.42 28.79 0.18 -0.03 16 3 C -0.18 -4.33 13.34 31.13 0.42 -3.92 16 4 C -0.20 -5.27 11.29 31.12 0.35 -4.92 16 5 C 0.19 4.85 2.53 43.11 0.11 4.96 16 6 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 7 C -0.14 -2.73 8.80 71.98 0.63 -2.09 16 8 N -0.54 -16.62 4.56 -881.14 -4.02 -20.64 16 9 C 0.08 2.45 5.38 86.31 0.46 2.92 16 10 C 0.06 2.29 5.61 86.31 0.48 2.77 16 11 N -0.54 -24.94 4.70 -900.27 -4.23 -29.17 16 12 C 0.21 11.64 4.72 85.56 0.40 12.04 16 13 C -0.52 -30.24 8.47 25.60 0.22 -30.02 16 14 H 0.07 3.67 7.13 -2.91 -0.02 3.65 16 15 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 16 N -0.94 -57.45 13.29 21.45 0.28 -57.17 16 17 Si 0.97 44.61 29.54 68.60 2.03 46.64 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 21 C 0.07 2.76 5.43 86.31 0.47 3.23 16 22 C 0.07 2.06 5.23 86.31 0.45 2.52 16 23 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.10 1.23 8.14 -2.39 -0.02 1.22 16 27 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.08 1.40 6.28 -2.39 -0.01 1.38 16 31 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.08 2.47 6.99 -2.39 -0.02 2.45 16 33 H 0.07 2.76 8.07 -2.39 -0.02 2.75 16 34 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 35 H -0.04 -2.51 8.12 -2.39 -0.02 -2.53 16 36 H 0.00 0.15 8.03 -2.39 -0.02 0.14 16 37 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 38 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.07 3.20 6.79 -2.39 -0.02 3.18 16 40 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.11 2.67 6.06 -2.39 -0.01 2.66 16 Total: -1.00 -67.29 329.44 0.40 -66.89 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 0.98 Total: 6.64 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: 5.36 Total: -13.20 kcal Atomic # 7 Polarization: -99.01 SS G_CDS: -7.96 Total: -106.97 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -67.29 0.40 -66.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603017698.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.771 kcal (2) G-P(sol) polarization free energy of solvation -67.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds