Wall clock time and date at job start Sun Mar 29 2020 23:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47340 * 2 1 4 4 C 1.36346 * 125.64029 * 89.96864 * 3 2 1 5 5 C 1.34844 * 108.21930 * 179.97438 * 4 3 2 6 6 C 1.40895 * 107.41841 * 359.97438 * 5 4 3 7 7 C 1.50706 * 126.29033 * 179.73472 * 6 5 4 8 8 N 1.46894 * 109.47207 * 90.02764 * 7 6 5 9 9 C 1.46904 * 110.99797 * 293.95598 * 8 7 6 10 10 C 1.46899 * 111.00135 * 169.99876 * 8 7 6 11 11 C 1.52995 * 109.47199 * 189.99769 * 10 8 7 12 12 C 1.52999 * 109.47362 * 179.97438 * 11 10 8 13 13 C 1.50696 * 109.47251 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00451 * 0.02562 * 13 12 11 15 15 C 1.37883 * 120.00121 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99507 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00347 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46937 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47120 * 119.99961 * 17 15 13 20 20 H 1.48504 * 109.47264 * 240.00608 * 17 15 13 21 21 C 1.34848 * 107.41714 * 0.02562 * 6 5 4 22 22 H 1.09001 * 109.47283 * 300.00590 * 1 2 3 23 23 H 1.09000 * 109.46682 * 60.00560 * 1 2 3 24 24 H 1.08995 * 109.47110 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47525 * 239.99870 * 2 1 3 26 26 H 1.09004 * 109.47123 * 119.99598 * 2 1 3 27 27 H 1.07994 * 125.88498 * 359.96247 * 4 3 2 28 28 H 1.07998 * 126.29086 * 180.02562 * 5 4 3 29 29 H 1.09001 * 109.47030 * 210.02627 * 7 6 5 30 30 H 1.09007 * 109.46992 * 330.02437 * 7 6 5 31 31 H 1.09001 * 109.47252 * 59.99737 * 9 8 7 32 32 H 1.09007 * 109.46920 * 180.02562 * 9 8 7 33 33 H 1.09003 * 109.46873 * 299.99418 * 9 8 7 34 34 H 1.08994 * 109.46822 * 310.00130 * 10 8 7 35 35 H 1.09001 * 109.46901 * 70.00193 * 10 8 7 36 36 H 1.09005 * 109.47626 * 300.00688 * 11 10 8 37 37 H 1.09005 * 109.47309 * 60.00217 * 11 10 8 38 38 H 1.09002 * 109.47037 * 300.00217 * 12 11 10 39 39 H 1.09001 * 109.46771 * 60.00404 * 12 11 10 40 40 H 0.97005 * 119.99661 * 179.97438 * 16 15 13 41 41 H 1.08001 * 125.89182 * 179.97438 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2827 2.1304 1.1081 5 6 2.7123 3.3432 0.7044 6 6 2.7139 3.3425 -0.7046 7 6 3.1149 4.4891 -1.5966 8 7 4.5527 4.4054 -1.8853 9 6 5.3472 4.6155 -0.6676 10 6 4.9355 5.3593 -2.9348 11 6 6.3705 5.0757 -3.3831 12 6 6.7689 6.0689 -4.4766 13 6 8.1822 5.7891 -4.9186 14 1 8.7404 4.9833 -4.4652 15 6 8.7625 6.5613 -5.9026 16 7 8.0826 7.5423 -6.4550 17 14 10.5141 6.2142 -6.4510 18 1 11.0557 5.0661 -5.6803 19 1 10.5235 5.8860 -7.8992 20 1 11.3553 7.4139 -6.2096 21 6 2.2847 2.1296 -1.1082 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.1675 1.8082 2.1324 28 1 3.0027 4.1638 1.3435 29 1 2.5534 4.4373 -2.5295 30 1 2.8993 5.4325 -1.0948 31 1 5.0934 3.8523 0.0680 32 1 6.4079 4.5487 -0.9099 33 1 5.1300 5.6019 -0.2578 34 1 4.2616 5.2537 -3.7850 35 1 4.8709 6.3747 -2.5439 36 1 7.0444 5.1812 -2.5328 37 1 6.4352 4.0603 -3.7740 38 1 6.0950 5.9628 -5.3268 39 1 6.7043 7.0845 -4.0861 40 1 8.4910 8.0858 -7.1470 41 1 2.1712 1.8067 -2.1325 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616786249.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:57 Heat of formation + Delta-G solvation = 38.448341 kcal Electronic energy + Delta-G solvation = -17706.064575 eV Core-core repulsion = 15007.428994 eV Total energy + Delta-G solvation = -2698.635580 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.19576 -37.33806 -34.49146 -33.44961 -31.45190 -29.72886 -29.04510 -26.90766 -26.44072 -24.20774 -23.02875 -21.30189 -20.17911 -19.70889 -19.29070 -17.06033 -16.22971 -15.32340 -14.99194 -14.84711 -14.67136 -14.26140 -13.92128 -13.54938 -13.47446 -13.14008 -12.49972 -12.30465 -12.23166 -12.16490 -11.94913 -11.63842 -11.53374 -11.23109 -11.05500 -10.95231 -10.74184 -10.44102 -10.36994 -9.49383 -9.25227 -8.96555 -8.48174 -8.27406 -8.04857 -7.78018 -5.92898 -3.94283 2.29710 2.88827 3.02481 3.35828 3.42893 3.47961 4.37441 4.50758 4.63139 4.67399 4.82223 4.97203 5.16540 5.21923 5.29530 5.42857 5.44167 5.52525 5.65969 5.70811 5.76292 5.87088 5.93691 6.06668 6.17723 6.25061 6.36530 6.47629 6.53152 6.84836 6.92739 7.05890 7.24450 7.28512 7.40996 7.58195 7.63301 7.78231 7.94229 8.08935 8.52912 9.13457 9.69253 11.18701 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.043482 B = 0.003186 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.795518 B = 8787.137992 C = 8931.804116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.102 3.898 3 N -0.452 5.452 4 C -0.023 4.023 5 C -0.191 4.191 6 C -0.152 4.152 7 C 0.125 3.875 8 N -0.538 5.538 9 C 0.026 3.974 10 C 0.055 3.945 11 C -0.104 4.104 12 C 0.021 3.979 13 C -0.515 4.515 14 H 0.055 0.945 15 C 0.054 3.946 16 N -0.897 5.897 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.285 1.285 21 C 0.004 3.996 22 H 0.061 0.939 23 H 0.063 0.937 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.155 0.845 28 H 0.130 0.870 29 H 0.073 0.927 30 H 0.033 0.967 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.017 0.983 34 H 0.067 0.933 35 H 0.026 0.974 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.015 0.985 39 H 0.013 0.987 40 H 0.259 0.741 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.559 -13.237 14.916 25.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.128 5.128 4 C -0.152 4.152 5 C -0.217 4.217 6 C -0.158 4.158 7 C -0.003 4.003 8 N -0.262 5.262 9 C -0.122 4.122 10 C -0.072 4.072 11 C -0.142 4.142 12 C -0.017 4.017 13 C -0.554 4.554 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.719 3.281 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.127 4.127 22 H 0.080 0.920 23 H 0.082 0.918 24 H 0.090 0.910 25 H 0.106 0.894 26 H 0.104 0.896 27 H 0.172 0.828 28 H 0.147 0.853 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.035 0.965 34 H 0.085 0.915 35 H 0.044 0.956 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.034 0.966 39 H 0.031 0.969 40 H 0.068 0.932 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -15.574 -13.933 14.611 25.499 hybrid contribution 0.809 0.716 -0.034 1.081 sum -14.765 -13.218 14.578 24.601 Atomic orbital electron populations 1.22175 0.94669 1.02711 1.03167 1.21763 0.95201 0.80882 1.04099 1.44080 1.51214 1.11393 1.06154 1.21668 1.09377 0.92836 0.91277 1.20789 1.08734 0.97469 0.94683 1.19326 1.07252 0.95677 0.93590 1.20368 0.89079 0.93722 0.97120 1.62077 1.03071 1.52151 1.08854 1.22387 0.98795 0.98866 0.92141 1.22297 0.99170 0.92400 0.93333 1.21641 0.92262 1.00890 0.99392 1.19084 0.96076 0.93751 0.92750 1.21315 0.98878 1.15379 1.19794 0.92655 1.25037 0.97834 0.95235 0.96516 1.69985 1.36896 1.19785 1.27052 0.86551 0.85002 0.78132 0.78420 1.19734 1.21067 1.21090 1.21596 1.07740 0.92077 0.91239 0.91998 0.91810 0.90987 0.89370 0.89597 0.82755 0.85251 0.90889 0.94845 0.91573 0.91245 0.96488 0.91453 0.95553 0.93488 0.92746 0.96646 0.96858 0.93167 0.82406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.95 10.24 37.16 0.38 -0.57 16 2 C 0.10 0.68 6.81 -4.04 -0.03 0.65 16 3 N -0.45 -4.63 2.75 -117.13 -0.32 -4.95 16 4 C -0.02 -0.24 11.43 -16.75 -0.19 -0.43 16 5 C -0.19 -2.37 9.50 -39.78 -0.38 -2.75 16 6 C -0.15 -2.05 4.97 -104.82 -0.52 -2.57 16 7 C 0.13 1.82 5.46 -4.98 -0.03 1.79 16 8 N -0.54 -9.01 4.75 -244.36 -1.16 -10.17 16 9 C 0.03 0.41 9.10 60.07 0.55 0.96 16 10 C 0.06 1.04 4.96 -3.83 -0.02 1.02 16 11 C -0.10 -2.29 5.08 -26.73 -0.14 -2.43 16 12 C 0.02 0.56 4.97 -27.89 -0.14 0.43 16 13 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 15 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.68 13.29 55.43 0.74 -26.95 16 17 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 18 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 21 C 0.00 0.04 11.35 -16.75 -0.19 -0.15 16 22 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 23 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 28 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 29 H 0.07 1.01 7.93 -51.93 -0.41 0.60 16 30 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 31 H 0.07 0.98 6.33 -51.93 -0.33 0.65 16 32 H 0.07 1.15 6.30 -51.93 -0.33 0.82 16 33 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 35 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 36 H 0.05 1.03 6.47 -51.93 -0.34 0.69 16 37 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 334.79 15.07 5.05 5.05 Total: -1.00 -32.40 334.79 -9.11 -41.51 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -7.27 Total: -3.72 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -1.11 Total: -17.98 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: -0.75 Total: -42.06 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.40 -9.11 -41.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616786249.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.960 kcal (2) G-P(sol) polarization free energy of solvation -32.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds