Wall clock time and date at job start Sun Mar 29 2020 23:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46836 * 2 1 4 4 C 1.53002 * 109.47023 * 119.99808 * 2 1 3 5 5 C 1.52998 * 109.47171 * 295.00291 * 4 2 1 6 6 C 1.47198 * 109.46945 * 180.02562 * 5 4 2 7 7 N 4.86672 * 101.55129 * 104.08640 * 2 1 3 8 8 C 1.52994 * 109.47398 * 240.00140 * 2 1 3 9 9 N 1.46500 * 109.47276 * 64.99923 * 8 2 1 10 10 C 1.36932 * 120.00218 * 84.27386 * 9 8 2 11 11 H 1.07997 * 120.00758 * 213.19073 * 10 9 8 12 12 C 1.38812 * 119.99765 * 33.19775 * 10 9 8 13 13 N 1.31625 * 120.00325 * 24.03002 * 12 10 9 14 14 Si 1.86807 * 120.00086 * 204.03533 * 12 10 9 15 15 H 1.48502 * 109.46719 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.46954 * 119.99350 * 14 12 10 17 17 H 1.48493 * 109.47099 * 239.99937 * 14 12 10 18 18 C 1.46505 * 119.99877 * 264.28117 * 9 8 2 19 19 C 1.54265 * 110.02917 * 237.90374 * 18 9 8 20 20 C 1.54963 * 104.16010 * 217.13582 * 19 18 9 21 21 C 1.54886 * 102.77954 * 37.88936 * 20 19 18 22 22 C 1.53871 * 110.03266 * 120.68771 * 18 9 8 23 23 H 1.09001 * 109.46836 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47387 * 300.00299 * 1 2 3 25 25 H 1.08995 * 109.46948 * 60.00021 * 1 2 3 26 26 H 1.08997 * 109.46946 * 55.00413 * 4 2 1 27 27 H 1.09001 * 109.46626 * 175.00236 * 4 2 1 28 28 H 1.09006 * 109.47160 * 300.00155 * 5 4 2 29 29 H 1.09001 * 109.47437 * 59.99858 * 5 4 2 30 30 H 1.08997 * 109.47631 * 184.99714 * 8 2 1 31 31 H 1.08999 * 109.46931 * 305.00191 * 8 2 1 32 32 H 0.96990 * 119.99912 * 180.02562 * 13 12 10 33 33 H 1.09004 * 110.01867 * 359.29423 * 18 9 8 34 34 H 1.09004 * 110.49190 * 335.78598 * 19 18 9 35 35 H 1.09007 * 110.48736 * 98.42777 * 19 18 9 36 36 H 1.09003 * 110.71700 * 279.57526 * 20 19 18 37 37 H 1.09004 * 110.91949 * 156.29958 * 20 19 18 38 38 H 1.08996 * 110.48974 * 203.40477 * 21 20 19 39 39 H 1.09002 * 110.59655 * 80.81584 * 21 20 19 40 40 H 1.08997 * 110.03230 * 238.56594 * 22 18 9 41 41 H 1.08997 * 110.03673 * 0.02562 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 0.0689 2.4953 6 6 2.1264 -0.6246 3.6972 7 7 2.5045 -1.1605 4.6248 8 6 2.0401 -0.7212 -1.2492 9 7 1.6525 0.0354 -2.4423 10 6 2.4267 1.0799 -2.8722 11 1 1.9661 1.9352 -3.3440 12 6 3.8037 1.0393 -2.7016 13 7 4.4185 -0.1186 -2.5839 14 14 4.7843 2.6281 -2.6389 15 1 3.8648 3.7837 -2.7944 16 1 5.4860 2.7254 -1.3338 17 1 5.7815 2.6380 -3.7391 18 6 0.4366 -0.3254 -3.1756 19 6 0.7826 -0.6574 -4.6418 20 6 -0.4104 -0.0890 -5.4510 21 6 -0.7405 1.2238 -4.6982 22 6 -0.5317 0.8699 -3.2112 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.6054 -1.7198 1.2952 27 1 3.1263 -0.7994 1.2056 28 1 2.0698 1.0676 2.4494 29 1 0.5489 0.1472 2.5390 30 1 3.1264 -0.7994 -1.2056 31 1 1.6054 -1.7197 -1.2951 32 1 5.3806 -0.1468 -2.4643 33 1 -0.0443 -1.1815 -2.7023 34 1 1.7107 -0.1669 -4.9353 35 1 0.8596 -1.7359 -4.7808 36 1 -1.2575 -0.7744 -5.4219 37 1 -0.1187 0.1188 -6.4805 38 1 -1.7744 1.5176 -4.8790 39 1 -0.0602 2.0202 -5.0000 40 1 -1.4828 0.5937 -2.7561 41 1 -0.0968 1.7187 -2.6834 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618887997.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:55 Heat of formation + Delta-G solvation = 4.805065 kcal Electronic energy + Delta-G solvation = -19100.603291 eV Core-core repulsion = 16400.508829 eV Total energy + Delta-G solvation = -2700.094462 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.57715 -38.19624 -36.95378 -35.19700 -32.84689 -30.94631 -29.31178 -28.40488 -27.26551 -25.73946 -23.52107 -21.27594 -20.81479 -20.44774 -18.48693 -17.83326 -17.07162 -16.32565 -16.21389 -15.86510 -15.36590 -14.88876 -14.61112 -14.50509 -14.25203 -13.96707 -13.53305 -13.31486 -13.24436 -12.78746 -12.73180 -12.57947 -12.43590 -12.11876 -12.08763 -11.86742 -11.74009 -11.67179 -11.56986 -11.29475 -11.22550 -11.18685 -11.04018 -10.94666 -10.34447 -8.38338 -7.62095 -5.20025 1.48041 1.54604 1.61029 1.80617 1.85140 2.61473 3.13955 3.38271 3.77834 4.07216 4.09310 4.22455 4.25897 4.36687 4.55960 4.66224 4.78072 4.80692 4.86007 4.92118 5.01305 5.03669 5.04681 5.10417 5.18209 5.25488 5.28821 5.30603 5.36137 5.40913 5.57887 5.61259 5.73548 5.77451 5.80492 5.88144 5.92310 6.11785 6.63556 6.64627 7.35484 8.10933 8.58457 9.28870 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.016327 B = 0.007634 C = 0.005814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.537780 B = 3667.010093 C = 4814.846386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 H 0.054 0.946 4 C -0.101 4.101 5 C -0.020 4.020 6 C 0.239 3.761 7 N -0.508 5.508 8 C 0.141 3.859 9 N -0.586 5.586 10 C -0.224 4.224 11 H 0.055 0.945 12 C -0.040 4.040 13 N -0.917 5.917 14 Si 0.936 3.064 15 H -0.269 1.269 16 H -0.293 1.293 17 H -0.304 1.304 18 C 0.165 3.835 19 C -0.134 4.134 20 C -0.114 4.114 21 C -0.116 4.116 22 C -0.124 4.124 23 H 0.047 0.953 24 H 0.070 0.930 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.047 0.953 28 H 0.124 0.876 29 H 0.139 0.861 30 H 0.063 0.937 31 H 0.020 0.980 32 H 0.244 0.756 33 H 0.056 0.944 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.044 0.956 40 H 0.069 0.931 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.670 1.742 1.722 11.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 H 0.073 0.927 4 C -0.140 4.140 5 C -0.059 4.059 6 C -0.077 4.077 7 N -0.187 5.187 8 C 0.015 3.985 9 N -0.305 5.305 10 C -0.355 4.355 11 H 0.073 0.927 12 C -0.237 4.237 13 N -0.563 5.563 14 Si 0.766 3.234 15 H -0.194 1.194 16 H -0.220 1.220 17 H -0.232 1.232 18 C 0.058 3.942 19 C -0.174 4.174 20 C -0.151 4.151 21 C -0.154 4.154 22 C -0.163 4.163 23 H 0.066 0.934 24 H 0.088 0.912 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.142 0.858 29 H 0.157 0.843 30 H 0.080 0.920 31 H 0.039 0.961 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.063 0.937 40 H 0.088 0.912 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.953 0.906 3.136 11.429 hybrid contribution 1.269 0.744 -0.489 1.550 sum -9.684 1.650 2.647 10.174 Atomic orbital electron populations 1.21897 0.94431 1.01246 1.02233 1.21455 0.96634 0.99509 0.93891 0.92721 1.21432 1.00595 0.99389 0.92628 1.19620 1.04271 0.98665 0.83364 1.29916 0.91536 0.92243 0.94021 1.81203 1.11652 1.11745 1.14087 1.21040 1.01077 0.91227 0.85120 1.44156 1.24337 1.35829 1.26159 1.18999 0.87312 0.95251 1.33935 0.92708 1.25475 0.97615 0.97443 1.03117 1.70106 1.07694 1.24266 1.54256 0.85691 0.78917 0.82315 0.76461 1.19356 1.21993 1.23224 1.21245 0.87427 0.94828 0.90668 1.22761 0.98239 0.98578 0.97790 1.22399 0.97555 0.97143 0.98048 1.22256 1.00716 0.96998 0.95420 1.22524 0.98631 0.98961 0.96224 0.93354 0.91162 0.92700 0.91206 0.93413 0.85850 0.84292 0.91960 0.96129 0.94660 0.92538 0.93992 0.93984 0.90475 0.92247 0.90479 0.93706 0.91194 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 8.59 71.98 0.62 -2.96 16 2 C -0.09 -2.96 2.56 -10.79 -0.03 -2.99 16 3 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 4 C -0.10 -2.63 4.64 30.59 0.14 -2.48 16 5 C -0.02 -0.37 5.46 28.79 0.16 -0.21 16 6 C 0.24 6.00 15.43 89.44 1.38 7.38 16 7 N -0.51 -16.01 18.54 20.01 0.37 -15.63 16 8 C 0.14 5.87 4.76 86.38 0.41 6.28 16 9 N -0.59 -25.57 2.13 -674.03 -1.43 -27.00 16 10 C -0.22 -11.09 7.60 84.03 0.64 -10.45 16 11 H 0.06 2.77 7.27 -2.91 -0.02 2.75 16 12 C -0.04 -2.11 4.98 84.86 0.42 -1.69 16 13 N -0.92 -51.27 11.27 21.65 0.24 -51.03 16 14 Si 0.94 43.03 29.62 68.60 2.03 45.06 16 15 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 16 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 17 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 18 C 0.17 6.10 2.56 45.71 0.12 6.21 16 19 C -0.13 -5.05 6.42 31.69 0.20 -4.85 16 20 C -0.11 -3.29 6.91 31.91 0.22 -3.07 16 21 C -0.12 -3.34 6.83 31.67 0.22 -3.12 16 22 C -0.12 -3.90 4.45 31.32 0.14 -3.76 16 23 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 24 H 0.07 1.33 6.57 -2.39 -0.02 1.31 16 25 H 0.05 1.56 4.78 -2.39 -0.01 1.55 16 26 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.12 2.05 8.14 -2.38 -0.02 2.03 16 29 H 0.14 1.83 6.57 -2.39 -0.02 1.82 16 30 H 0.06 3.12 5.30 -2.39 -0.01 3.11 16 31 H 0.02 0.82 7.81 -2.39 -0.02 0.80 16 32 H 0.24 13.47 8.31 -92.72 -0.77 12.70 16 33 H 0.06 1.98 7.75 -2.39 -0.02 1.96 16 34 H 0.04 1.92 7.03 -2.38 -0.02 1.91 16 35 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.07 1.84 7.94 -2.39 -0.02 1.83 16 41 H 0.05 1.92 6.85 -2.39 -0.02 1.90 16 Total: -1.00 -60.78 321.67 6.84 -53.94 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 0.99 Total: 10.37 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: 4.64 Total: -15.72 kcal Atomic # 7 Polarization: -92.84 SS G_CDS: -0.82 Total: -93.66 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -60.78 6.84 -53.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618887997.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.745 kcal (2) G-P(sol) polarization free energy of solvation -60.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds