Wall clock time and date at job start Sun Mar 29 2020 23:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47071 * 2 1 4 4 C 1.53004 * 109.47102 * 240.00042 * 2 1 3 5 5 C 1.50699 * 109.46847 * 65.00007 * 4 2 1 6 6 H 1.08002 * 120.00511 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99783 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99573 * 180.27665 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 89.99934 * 9 7 5 11 11 H 1.48499 * 109.47026 * 209.99782 * 9 7 5 12 12 H 1.48496 * 109.47474 * 329.99818 * 9 7 5 13 13 C 1.53002 * 109.47119 * 120.00133 * 2 1 3 14 14 N 1.46904 * 109.46972 * 295.00211 * 13 2 1 15 15 C 1.46902 * 110.99866 * 293.95098 * 14 13 2 16 16 C 1.46902 * 110.99839 * 170.00030 * 14 13 2 17 17 C 1.50697 * 109.47134 * 189.99771 * 16 14 13 18 18 C 1.34848 * 125.89027 * 95.02081 * 17 16 14 19 19 C 1.40885 * 107.41845 * 180.02562 * 18 17 16 20 20 C 1.34853 * 107.41732 * 0.02562 * 19 18 17 21 21 N 1.36340 * 108.21642 * 359.73663 * 20 19 18 22 22 C 1.46504 * 125.63536 * 180.26595 * 21 20 19 23 23 H 1.09001 * 109.47435 * 299.99531 * 1 2 3 24 24 H 1.08997 * 109.47191 * 60.00378 * 1 2 3 25 25 H 1.09006 * 109.46667 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47264 * 305.00181 * 4 2 1 27 27 H 1.09005 * 109.46510 * 184.99768 * 4 2 1 28 28 H 0.97004 * 119.99485 * 179.72881 * 8 7 5 29 29 H 1.08997 * 109.46854 * 55.00154 * 13 2 1 30 30 H 1.09005 * 109.47142 * 175.00317 * 13 2 1 31 31 H 1.09006 * 109.46689 * 60.00792 * 15 14 13 32 32 H 1.08996 * 109.46795 * 179.97438 * 15 14 13 33 33 H 1.08998 * 109.47392 * 300.00589 * 15 14 13 34 34 H 1.08996 * 109.46770 * 310.00045 * 16 14 13 35 35 H 1.09006 * 109.47051 * 70.00014 * 16 14 13 36 36 H 1.08005 * 126.29218 * 359.97438 * 18 17 16 37 37 H 1.08000 * 126.29317 * 180.02562 * 19 18 17 38 38 H 1.08003 * 125.88756 * 179.97438 * 20 19 18 39 39 H 1.08996 * 109.47120 * 270.19256 * 22 21 20 40 40 H 1.08996 * 109.46843 * 30.19240 * 22 21 20 41 41 H 1.08997 * 109.47106 * 150.18781 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9932 -0.4017 -3.7283 8 7 1.6500 0.2805 -4.7990 9 14 2.9648 -1.9875 -3.9027 10 1 2.0264 -3.1326 -4.0195 11 1 3.8134 -1.9169 -5.1193 12 1 3.8269 -2.1739 -2.7081 13 6 2.0400 -0.7213 1.2492 14 7 1.6513 0.0374 2.4457 15 6 2.3341 1.3374 2.4895 16 6 1.9124 -0.7358 3.6671 17 6 1.2830 -0.0399 4.8463 18 6 0.0663 -0.3052 5.3637 19 6 -0.1299 0.5698 6.4503 20 6 0.9742 1.3370 6.5552 21 7 1.8472 0.9636 5.5768 22 6 3.1714 1.5465 5.3463 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 1.6054 -1.7197 -1.2952 27 1 3.1264 -0.7994 -1.2055 28 1 1.9010 -0.0402 -5.6795 29 1 1.6054 -1.7198 1.2951 30 1 3.1264 -0.7995 1.2056 31 1 2.0677 1.9176 1.6060 32 1 2.0280 1.8784 3.3848 33 1 3.4126 1.1809 2.5099 34 1 1.4857 -1.7334 3.5637 35 1 2.9882 -0.8152 3.8239 36 1 -0.6302 -1.0509 5.0097 37 1 -1.0038 0.6175 7.0830 38 1 1.1399 2.1109 7.2901 39 1 3.0837 2.3860 4.6567 40 1 3.5844 1.8954 6.2927 41 1 3.8311 0.7918 4.9182 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618888315.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:12 Heat of formation + Delta-G solvation = 50.346833 kcal Electronic energy + Delta-G solvation = -18523.535819 eV Core-core repulsion = 15825.416196 eV Total energy + Delta-G solvation = -2698.119623 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.29942 -37.78393 -34.52642 -32.98309 -32.08848 -30.02028 -27.64075 -27.05569 -26.32221 -25.74382 -23.29663 -21.32100 -20.54199 -19.08201 -18.85991 -17.01348 -16.68016 -16.17265 -15.20298 -14.75415 -14.43559 -14.01852 -13.88366 -13.32494 -13.30206 -12.87878 -12.66028 -12.61287 -12.28774 -12.07434 -11.99605 -11.72113 -11.54298 -11.38462 -11.18158 -10.93576 -10.68531 -10.43905 -9.72451 -9.67652 -9.40151 -9.03840 -8.58974 -8.49916 -8.19384 -7.92401 -6.00240 -3.96933 2.20672 2.90048 3.06011 3.32411 3.39645 3.42858 4.23944 4.48183 4.57978 4.80032 4.92088 4.96915 5.13475 5.19428 5.33018 5.39329 5.46467 5.55581 5.63108 5.72601 5.73635 5.85841 6.01317 6.11596 6.29641 6.31257 6.38969 6.43817 6.63824 6.87312 7.03115 7.08507 7.15041 7.22907 7.26629 7.27574 7.35690 7.39552 7.52115 7.84944 8.59778 9.05854 9.62735 11.13283 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.043510 B = 0.004152 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.377591 B = 6742.344596 C = 6812.467660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.072 4.072 3 H 0.061 0.939 4 C -0.009 4.009 5 C -0.512 4.512 6 H 0.073 0.927 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.057 3.943 14 N -0.529 5.529 15 C 0.015 3.985 16 C 0.122 3.878 17 C 0.030 3.970 18 C -0.182 4.182 19 C -0.201 4.201 20 C -0.022 4.022 21 N -0.448 5.448 22 C 0.067 3.933 23 H 0.045 0.955 24 H 0.058 0.942 25 H 0.039 0.961 26 H 0.011 0.989 27 H 0.011 0.989 28 H 0.262 0.738 29 H 0.070 0.930 30 H 0.028 0.972 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.020 0.980 34 H 0.094 0.906 35 H 0.032 0.968 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.157 0.843 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.359 0.401 22.242 22.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.091 4.091 3 H 0.080 0.920 4 C -0.047 4.047 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.070 4.070 14 N -0.253 5.253 15 C -0.133 4.133 16 C -0.006 4.006 17 C -0.082 4.082 18 C -0.208 4.208 19 C -0.226 4.226 20 C -0.151 4.151 21 N -0.125 5.125 22 C -0.075 4.075 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.030 0.970 27 H 0.029 0.971 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.038 0.962 34 H 0.112 0.888 35 H 0.050 0.950 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.175 0.825 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.229 0.631 21.951 22.073 hybrid contribution 1.421 -0.880 -0.204 1.684 sum 3.650 -0.249 21.747 22.052 Atomic orbital electron populations 1.21591 0.95199 1.00635 1.00745 1.21029 0.96422 0.99118 0.92482 0.92038 1.19622 0.95618 0.95931 0.93548 1.21134 1.35211 1.09535 0.89075 0.90844 1.25030 0.95684 0.96924 0.95955 1.69919 1.47287 1.39267 0.98020 0.86806 0.80649 0.84430 0.77525 1.20330 1.21532 1.19188 1.22396 0.97437 0.97397 0.89736 1.62043 1.58232 1.03812 1.01228 1.22693 0.95299 0.92227 1.03061 1.20547 0.96976 0.96610 0.86459 1.20190 0.95733 0.95053 0.97196 1.20657 0.96398 1.04157 0.99540 1.20852 0.99085 1.00632 1.02029 1.21711 0.91935 1.04475 0.97006 1.43932 1.14187 1.28993 1.25421 1.22148 0.82558 0.99759 1.02990 0.93579 0.92317 0.94225 0.97037 0.97059 0.92855 0.91113 0.95413 0.90460 0.91711 0.96196 0.88809 0.94951 0.84823 0.84980 0.82543 0.90451 0.90198 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 8.89 37.16 0.33 -2.11 16 2 C -0.07 -1.42 2.26 -90.62 -0.20 -1.63 16 3 H 0.06 1.26 6.34 -51.93 -0.33 0.94 16 4 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 5 C -0.51 -14.53 8.96 -34.44 -0.31 -14.84 16 6 H 0.07 2.25 7.30 -52.49 -0.38 1.86 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -28.10 13.96 55.43 0.77 -27.33 16 9 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 13 C 0.06 0.94 4.35 -3.82 -0.02 0.92 16 14 N -0.53 -7.74 4.21 -244.36 -1.03 -8.77 16 15 C 0.02 0.21 7.99 60.07 0.48 0.69 16 16 C 0.12 1.54 5.17 -4.98 -0.03 1.51 16 17 C 0.03 0.38 5.68 -81.79 -0.46 -0.09 16 18 C -0.18 -2.38 10.76 -39.78 -0.43 -2.81 16 19 C -0.20 -2.37 10.86 -39.78 -0.43 -2.80 16 20 C -0.02 -0.23 11.43 -16.75 -0.19 -0.42 16 21 N -0.45 -4.97 2.75 -119.90 -0.33 -5.30 16 22 C 0.07 0.54 9.25 59.85 0.55 1.09 16 23 H 0.05 0.84 7.75 -51.93 -0.40 0.44 16 24 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 27 H 0.01 0.27 7.20 -51.93 -0.37 -0.11 16 28 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.07 1.12 7.93 -51.93 -0.41 0.71 16 30 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 31 H 0.08 1.15 6.37 -51.93 -0.33 0.82 16 32 H 0.06 0.81 4.36 -51.93 -0.23 0.59 16 33 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.09 1.13 7.93 -51.93 -0.41 0.72 16 35 H 0.03 0.38 7.19 -51.93 -0.37 0.01 16 36 H 0.13 1.64 8.06 -52.48 -0.42 1.22 16 37 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.16 1.21 8.06 -52.48 -0.42 0.79 16 39 H 0.08 0.60 6.35 -51.93 -0.33 0.27 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.62 7.11 -51.93 -0.37 0.25 16 LS Contribution 319.11 15.07 4.81 4.81 Total: -1.00 -31.72 319.11 -8.17 -39.89 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -6.82 Total: -1.50 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -0.90 Total: -19.01 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: -0.58 Total: -41.40 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.72 -8.17 -39.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618888315.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.235 kcal (2) G-P(sol) polarization free energy of solvation -31.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds