Wall clock time and date at job start Sun Mar 29 2020 22:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35488 * 126.97759 * 2 1 4 4 N 1.30524 * 107.30570 * 179.97438 * 3 2 1 5 5 N 1.28596 * 109.67342 * 0.02562 * 4 3 2 6 6 C 1.30520 * 109.67290 * 359.97438 * 5 4 3 7 7 C 1.50700 * 126.34920 * 180.02562 * 6 5 4 8 8 N 1.46901 * 109.47019 * 89.97570 * 7 6 5 9 9 C 1.46846 * 111.00077 * 66.04952 * 8 7 6 10 10 C 1.53036 * 109.52170 * 174.15846 * 9 8 7 11 11 C 1.53127 * 109.27834 * 59.18097 * 10 9 8 12 12 C 1.53120 * 109.15793 * 302.34284 * 11 10 9 13 13 H 1.08997 * 109.50515 * 297.71352 * 12 11 10 14 14 C 1.50703 * 109.50202 * 177.63546 * 12 11 10 15 15 H 1.07997 * 120.00041 * 240.00025 * 14 12 11 16 16 C 1.37871 * 120.00153 * 59.99929 * 14 12 11 17 17 N 1.31519 * 119.99880 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 120.00367 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47021 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47273 * 119.99875 * 18 16 14 21 21 H 1.48497 * 109.47526 * 240.00028 * 18 16 14 22 22 C 1.46849 * 110.99777 * 301.83650 * 8 7 6 23 23 H 1.09007 * 109.46446 * 90.03189 * 1 2 3 24 24 H 1.08999 * 109.47074 * 210.02444 * 1 2 3 25 25 H 1.08996 * 109.47711 * 330.02869 * 1 2 3 26 26 H 1.08003 * 126.34772 * 0.23993 * 3 2 1 27 27 H 1.08997 * 109.46999 * 209.97498 * 7 6 5 28 28 H 1.08998 * 109.46660 * 329.97554 * 7 6 5 29 29 H 1.09003 * 109.46036 * 294.17248 * 9 8 7 30 30 H 1.08997 * 109.46120 * 54.14543 * 9 8 7 31 31 H 1.08999 * 109.50181 * 179.11649 * 10 9 8 32 32 H 1.09000 * 109.50744 * 299.24100 * 10 9 8 33 33 H 1.08996 * 109.52550 * 62.24760 * 11 10 9 34 34 H 1.08999 * 109.52089 * 182.37788 * 11 10 9 35 35 H 0.97002 * 119.99958 * 179.97438 * 17 16 14 36 36 H 1.08997 * 109.46913 * 305.85642 * 22 8 7 37 37 H 1.09000 * 109.46476 * 65.82709 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5091 0.6430 0.0006 5 7 3.5091 -0.6430 0.0004 6 6 2.2801 -1.0824 0.0002 7 6 1.8477 -2.5260 0.0005 8 7 1.7075 -2.9949 1.3856 9 6 0.6076 -2.3007 2.0674 10 6 0.3970 -2.9140 3.4536 11 6 1.6888 -2.7838 4.2655 12 6 2.8285 -3.4733 3.5104 13 1 2.6067 -4.5355 3.4076 14 6 4.1157 -3.2998 4.2747 15 1 4.9522 -2.7938 3.8158 16 6 4.2255 -3.7871 5.5598 17 7 3.2067 -4.4029 6.1188 18 14 5.8212 -3.5727 6.5069 19 1 6.8057 -2.8512 5.6611 20 1 5.5625 -2.7897 7.7419 21 1 6.3639 -4.9062 6.8709 22 6 2.9687 -2.8438 2.1225 23 1 -0.3632 -0.0006 -1.0278 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3634 0.8902 0.5133 26 1 1.9701 2.1170 0.0036 27 1 0.8908 -2.6188 -0.5131 28 1 2.5959 -3.1294 -0.5134 29 1 0.8542 -1.2440 2.1714 30 1 -0.3058 -2.4045 1.4818 31 1 -0.4090 -2.3882 3.9655 32 1 0.1370 -3.9674 3.3499 33 1 1.9282 -1.7294 4.4027 34 1 1.5566 -3.2570 5.2385 35 1 3.2840 -4.7460 7.0228 36 1 3.7700 -3.3421 1.5770 37 1 3.2041 -1.7846 2.2262 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692793960.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:58 Heat of formation + Delta-G solvation = 83.305216 kcal Electronic energy + Delta-G solvation = -19151.453747 eV Core-core repulsion = 16351.222964 eV Total energy + Delta-G solvation = -2800.230784 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.01816 -38.36619 -35.08019 -33.98526 -32.18264 -30.08810 -29.90812 -27.80399 -26.23090 -24.96510 -22.52009 -22.31188 -21.45417 -20.41968 -18.58914 -17.15122 -16.61832 -16.11607 -15.20839 -15.14602 -14.68053 -14.24393 -14.05364 -13.61025 -13.30705 -13.13153 -12.62010 -12.40076 -12.29127 -11.77467 -11.47562 -11.33441 -10.92755 -10.66556 -10.61155 -10.25207 -10.16725 -10.05767 -9.84042 -9.53410 -9.20111 -8.97166 -8.69305 -8.29368 -7.95344 -5.94299 -3.99207 1.89308 2.52681 3.06301 3.34168 3.42001 3.48547 4.28359 4.42998 4.49186 4.58130 4.62336 4.82833 4.99545 5.09451 5.35648 5.44906 5.57683 5.64241 5.76727 5.88975 5.93356 6.16395 6.25536 6.43376 6.49832 6.61269 6.70644 6.90465 6.98409 7.15094 7.31162 7.48990 7.66327 7.80508 8.08060 8.17825 8.51777 8.90117 9.05215 9.65244 11.12008 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.027293 B = 0.006735 C = 0.005950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.644510 B = 4156.658786 C = 4704.848668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.475 5.475 3 C 0.138 3.862 4 N -0.298 5.298 5 N -0.282 5.282 6 C 0.152 3.848 7 C 0.135 3.865 8 N -0.519 5.519 9 C 0.055 3.945 10 C -0.117 4.117 11 C -0.111 4.111 12 C 0.055 3.945 13 H 0.035 0.965 14 C -0.510 4.510 15 H 0.055 0.945 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.889 3.111 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.068 3.932 23 H 0.080 0.920 24 H 0.097 0.903 25 H 0.090 0.910 26 H 0.214 0.786 27 H 0.085 0.915 28 H 0.108 0.892 29 H 0.023 0.977 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.027 0.973 34 H 0.093 0.907 35 H 0.258 0.742 36 H 0.066 0.934 37 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.583 7.374 -11.508 17.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.167 5.167 3 C -0.150 4.150 4 N -0.137 5.137 5 N -0.123 5.123 6 C -0.117 4.117 7 C 0.004 3.996 8 N -0.242 5.242 9 C -0.072 4.072 10 C -0.155 4.155 11 C -0.149 4.149 12 C 0.036 3.964 13 H 0.053 0.947 14 C -0.549 4.549 15 H 0.074 0.926 16 C -0.139 4.139 17 N -0.531 5.531 18 Si 0.717 3.283 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.210 1.210 22 C -0.058 4.058 23 H 0.099 0.901 24 H 0.116 0.884 25 H 0.109 0.891 26 H 0.230 0.770 27 H 0.103 0.897 28 H 0.126 0.874 29 H 0.041 0.959 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.111 0.889 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -9.246 6.778 -11.341 16.126 hybrid contribution -0.505 1.311 0.650 1.548 sum -9.750 8.089 -10.691 16.577 Atomic orbital electron populations 1.22301 0.75892 1.05860 1.03970 1.46273 1.08964 1.06880 1.54545 1.26376 0.87540 0.94843 1.06235 1.74240 1.18012 1.03739 1.17729 1.74326 1.17226 1.02790 1.17933 1.26370 0.87515 0.93927 1.03901 1.20996 1.01930 0.83003 0.93691 1.62483 1.07664 1.53716 1.00324 1.22271 0.93020 0.95374 0.96578 1.21685 0.99628 1.00514 0.93667 1.21666 0.92766 0.98995 1.01483 1.18687 0.94011 0.95731 0.87988 0.94722 1.21204 0.98349 1.36502 0.98835 0.92625 1.24920 0.96324 0.95055 0.97561 1.69898 1.29949 1.38663 1.14548 0.86571 0.84057 0.77793 0.79853 1.19703 1.21166 1.20992 1.22379 0.87639 0.99169 0.96645 0.90114 0.88410 0.89123 0.76989 0.89675 0.87367 0.95913 0.92347 0.93466 0.91737 0.95424 0.88899 0.93186 0.91579 0.95392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.47 10.25 59.85 0.61 1.08 16 2 N -0.47 -5.93 2.82 -122.68 -0.35 -6.28 16 3 C 0.14 1.82 12.74 -89.95 -1.15 0.68 16 4 N -0.30 -5.38 12.21 29.69 0.36 -5.02 16 5 N -0.28 -5.44 11.57 32.80 0.38 -5.06 16 6 C 0.15 2.40 5.39 -154.98 -0.84 1.57 16 7 C 0.14 1.94 5.61 -4.98 -0.03 1.91 16 8 N -0.52 -9.17 4.86 -236.11 -1.15 -10.31 16 9 C 0.06 0.89 3.80 -3.83 -0.01 0.87 16 10 C -0.12 -2.18 6.09 -26.65 -0.16 -2.35 16 11 C -0.11 -2.63 5.02 -26.60 -0.13 -2.77 16 12 C 0.05 1.39 2.26 -91.69 -0.21 1.18 16 13 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 14 C -0.51 -14.48 8.57 -34.44 -0.30 -14.78 16 15 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 16 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 17 N -0.89 -25.72 11.35 55.43 0.63 -25.09 16 18 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 19 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 C 0.07 1.50 4.16 -3.83 -0.02 1.49 16 23 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.10 0.77 4.56 -51.93 -0.24 0.53 16 25 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.21 1.76 8.06 -52.48 -0.42 1.33 16 27 H 0.08 0.93 7.77 -51.93 -0.40 0.52 16 28 H 0.11 1.54 8.14 -51.93 -0.42 1.11 16 29 H 0.02 0.38 6.43 -51.93 -0.33 0.05 16 30 H 0.06 0.73 6.68 -51.93 -0.35 0.39 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 2.46 6.15 -51.93 -0.32 2.14 16 35 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.07 1.50 8.12 -51.93 -0.42 1.07 16 37 H 0.03 0.67 6.86 -51.93 -0.36 0.32 16 LS Contribution 290.56 15.07 4.38 4.38 Total: -1.00 -33.44 290.56 -8.43 -41.86 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -5.34 Total: -1.98 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -2.32 Total: -9.44 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: -0.12 Total: -51.76 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.44 -8.43 -41.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692793960.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.169 kcal (2) G-P(sol) polarization free energy of solvation -33.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds