Wall clock time and date at job start Sun Mar 29 2020 22:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35488 * 126.97759 * 2 1 4 4 N 1.30524 * 107.30570 * 179.97438 * 3 2 1 5 5 N 1.28596 * 109.67342 * 0.02562 * 4 3 2 6 6 C 1.30520 * 109.67290 * 359.97438 * 5 4 3 7 7 C 1.50700 * 126.34920 * 180.02562 * 6 5 4 8 8 N 1.46901 * 109.47019 * 89.97570 * 7 6 5 9 9 C 1.46846 * 111.00077 * 66.04952 * 8 7 6 10 10 C 1.53036 * 109.52170 * 174.15846 * 9 8 7 11 11 C 1.53127 * 109.27834 * 59.18097 * 10 9 8 12 12 C 1.53120 * 109.15793 * 302.34284 * 11 10 9 13 13 H 1.08997 * 109.50515 * 297.71352 * 12 11 10 14 14 C 1.50703 * 109.50202 * 177.63546 * 12 11 10 15 15 H 1.07997 * 120.00041 * 240.00025 * 14 12 11 16 16 C 1.37871 * 120.00153 * 59.99929 * 14 12 11 17 17 N 1.31519 * 119.99880 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 120.00367 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47021 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47273 * 119.99875 * 18 16 14 21 21 H 1.48497 * 109.47526 * 240.00028 * 18 16 14 22 22 C 1.46849 * 110.99777 * 301.83650 * 8 7 6 23 23 H 1.09007 * 109.46446 * 90.03189 * 1 2 3 24 24 H 1.08999 * 109.47074 * 210.02444 * 1 2 3 25 25 H 1.08996 * 109.47711 * 330.02869 * 1 2 3 26 26 H 1.08003 * 126.34772 * 0.23993 * 3 2 1 27 27 H 1.08997 * 109.46999 * 209.97498 * 7 6 5 28 28 H 1.08998 * 109.46660 * 329.97554 * 7 6 5 29 29 H 1.09003 * 109.46036 * 294.17248 * 9 8 7 30 30 H 1.08997 * 109.46120 * 54.14543 * 9 8 7 31 31 H 1.08999 * 109.50181 * 179.11649 * 10 9 8 32 32 H 1.09000 * 109.50744 * 299.24100 * 10 9 8 33 33 H 1.08996 * 109.52550 * 62.24760 * 11 10 9 34 34 H 1.08999 * 109.52089 * 182.37788 * 11 10 9 35 35 H 0.97002 * 119.99958 * 179.97438 * 17 16 14 36 36 H 1.08997 * 109.46913 * 305.85642 * 22 8 7 37 37 H 1.09000 * 109.46476 * 65.82709 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5091 0.6430 0.0006 5 7 3.5091 -0.6430 0.0004 6 6 2.2801 -1.0824 0.0002 7 6 1.8477 -2.5260 0.0005 8 7 1.7075 -2.9949 1.3856 9 6 0.6076 -2.3007 2.0674 10 6 0.3970 -2.9140 3.4536 11 6 1.6888 -2.7838 4.2655 12 6 2.8285 -3.4733 3.5104 13 1 2.6067 -4.5355 3.4076 14 6 4.1157 -3.2998 4.2747 15 1 4.9522 -2.7938 3.8158 16 6 4.2255 -3.7871 5.5598 17 7 3.2067 -4.4029 6.1188 18 14 5.8212 -3.5727 6.5069 19 1 6.8057 -2.8512 5.6611 20 1 5.5625 -2.7897 7.7419 21 1 6.3639 -4.9062 6.8709 22 6 2.9687 -2.8438 2.1225 23 1 -0.3632 -0.0006 -1.0278 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3634 0.8902 0.5133 26 1 1.9701 2.1170 0.0036 27 1 0.8908 -2.6188 -0.5131 28 1 2.5959 -3.1294 -0.5134 29 1 0.8542 -1.2440 2.1714 30 1 -0.3058 -2.4045 1.4818 31 1 -0.4090 -2.3882 3.9655 32 1 0.1370 -3.9674 3.3499 33 1 1.9282 -1.7294 4.4027 34 1 1.5566 -3.2570 5.2385 35 1 3.2840 -4.7460 7.0228 36 1 3.7700 -3.3421 1.5770 37 1 3.2041 -1.7846 2.2262 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692793960.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:58 Heat of formation + Delta-G solvation = 60.559918 kcal Electronic energy + Delta-G solvation = -19152.440057 eV Core-core repulsion = 16351.222964 eV Total energy + Delta-G solvation = -2801.217094 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.10963 -39.90404 -36.25721 -35.57494 -33.92752 -31.75231 -31.37707 -28.61578 -27.55421 -26.92282 -24.01485 -23.56819 -22.95296 -21.73016 -20.22393 -18.55413 -18.04679 -17.48437 -16.73975 -16.32583 -16.21769 -15.73960 -15.41077 -15.03723 -14.46187 -14.29111 -14.14841 -14.05946 -13.61880 -13.22330 -12.96304 -12.88164 -12.58094 -12.55191 -12.36908 -11.88462 -11.75375 -11.45865 -11.27446 -11.10244 -10.90901 -10.71673 -10.41837 -10.28051 -9.43754 -8.12464 -6.25518 0.86622 1.35404 1.37208 1.49698 1.66044 1.90059 2.39784 3.00852 3.14074 3.40556 3.72203 3.86976 3.98055 4.11884 4.20913 4.35898 4.41546 4.52177 4.59257 4.62649 4.74686 4.76587 4.83116 4.92402 4.95166 5.03776 5.12797 5.22405 5.36404 5.46836 5.59848 5.85247 6.00889 6.04947 6.14003 6.18767 6.41329 6.85358 7.41967 7.77509 8.92196 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.027293 B = 0.006735 C = 0.005950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.644510 B = 4156.658786 C = 4704.848668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.468 5.468 3 C 0.156 3.844 4 N -0.357 5.357 5 N -0.339 5.339 6 C 0.145 3.855 7 C 0.138 3.862 8 N -0.523 5.523 9 C 0.061 3.939 10 C -0.112 4.112 11 C -0.103 4.103 12 C 0.053 3.947 13 H 0.004 0.996 14 C -0.539 4.539 15 H 0.038 0.962 16 C 0.019 3.981 17 N -0.911 5.911 18 Si 0.949 3.051 19 H -0.276 1.276 20 H -0.277 1.277 21 H -0.274 1.274 22 C 0.094 3.906 23 H 0.110 0.890 24 H 0.098 0.902 25 H 0.116 0.884 26 H 0.260 0.740 27 H 0.134 0.866 28 H 0.102 0.898 29 H 0.019 0.981 30 H 0.112 0.888 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.009 0.991 34 H 0.060 0.940 35 H 0.262 0.738 36 H 0.047 0.953 37 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.121 8.465 -12.519 20.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.159 5.159 3 C -0.133 4.133 4 N -0.196 5.196 5 N -0.180 5.180 6 C -0.126 4.126 7 C 0.007 3.993 8 N -0.246 5.246 9 C -0.067 4.067 10 C -0.149 4.149 11 C -0.141 4.141 12 C 0.034 3.966 13 H 0.022 0.978 14 C -0.577 4.577 15 H 0.056 0.944 16 C -0.180 4.180 17 N -0.551 5.551 18 Si 0.775 3.225 19 H -0.201 1.201 20 H -0.202 1.202 21 H -0.199 1.199 22 C -0.034 4.034 23 H 0.128 0.872 24 H 0.117 0.883 25 H 0.134 0.866 26 H 0.276 0.724 27 H 0.151 0.849 28 H 0.121 0.879 29 H 0.037 0.963 30 H 0.130 0.870 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.028 0.972 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -11.818 7.868 -12.364 18.827 hybrid contribution 0.219 1.008 0.948 1.401 sum -11.599 8.876 -11.416 18.538 Atomic orbital electron populations 1.22730 0.72509 1.07174 1.06339 1.46514 1.10782 1.05493 1.53069 1.27216 0.86433 0.96688 1.02938 1.74107 1.21118 1.03640 1.20690 1.74192 1.19888 1.03859 1.20034 1.26380 0.87364 0.95026 1.03829 1.21120 1.04344 0.82255 0.91565 1.62360 1.05765 1.54849 1.01608 1.22341 0.94285 0.94466 0.95571 1.21609 0.97282 1.01141 0.94889 1.21443 0.95094 0.96902 1.00696 1.18599 0.93588 0.94271 0.90107 0.97800 1.21506 0.99367 1.37010 0.99845 0.94376 1.25626 0.99417 0.94691 0.98271 1.70007 1.31367 1.38821 1.14873 0.85644 0.80259 0.78105 0.78516 1.20081 1.20217 1.19900 1.21828 0.89746 0.96702 0.95135 0.87207 0.88335 0.86565 0.72403 0.84864 0.87934 0.96269 0.86992 0.90605 0.92092 0.97201 0.92117 0.92876 0.93435 0.97834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.51 10.25 127.77 1.31 1.82 16 2 N -0.47 -10.18 2.82 -542.06 -1.53 -11.71 16 3 C 0.16 3.76 12.74 180.11 2.30 6.05 16 4 N -0.36 -12.90 12.21 -59.99 -0.73 -13.63 16 5 N -0.34 -13.30 11.57 -50.15 -0.58 -13.88 16 6 C 0.15 4.38 5.39 137.98 0.74 5.12 16 7 C 0.14 3.65 5.61 85.56 0.48 4.13 16 8 N -0.52 -17.76 4.86 -900.93 -4.38 -22.14 16 9 C 0.06 1.75 3.80 86.33 0.33 2.08 16 10 C -0.11 -3.96 6.09 30.65 0.19 -3.77 16 11 C -0.10 -5.00 5.02 30.68 0.15 -4.85 16 12 C 0.05 2.82 2.26 -11.49 -0.03 2.79 16 13 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 14 C -0.54 -32.03 8.57 25.60 0.22 -31.81 16 15 H 0.04 2.33 7.74 -2.91 -0.02 2.31 16 16 C 0.02 1.10 5.30 84.65 0.45 1.55 16 17 N -0.91 -53.91 11.35 21.45 0.24 -53.67 16 18 Si 0.95 46.06 29.54 68.60 2.03 48.09 16 19 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 22 C 0.09 4.27 4.16 86.33 0.36 4.63 16 23 H 0.11 0.49 8.14 -2.38 -0.02 0.47 16 24 H 0.10 0.96 4.56 -2.39 -0.01 0.95 16 25 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.26 3.23 8.06 -2.91 -0.02 3.21 16 27 H 0.13 2.25 7.77 -2.39 -0.02 2.23 16 28 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 29 H 0.02 0.58 6.43 -2.39 -0.02 0.57 16 30 H 0.11 2.13 6.68 -2.39 -0.02 2.12 16 31 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.06 3.31 6.15 -2.39 -0.01 3.30 16 35 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 36 H 0.05 2.28 8.12 -2.39 -0.02 2.26 16 37 H 0.00 0.17 6.86 -2.39 -0.02 0.16 16 Total: -1.00 -78.99 290.56 2.61 -76.38 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: 1.06 Total: 2.81 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: 6.50 Total: -12.26 kcal Atomic # 7 Polarization: -108.05 SS G_CDS: -6.98 Total: -115.02 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -78.99 2.61 -76.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692793960.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.941 kcal (2) G-P(sol) polarization free energy of solvation -78.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds