Wall clock time and date at job start Sun Mar 29 2020 22:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35499 * 126.98306 * 2 1 4 4 N 1.30516 * 107.30994 * 180.02562 * 3 2 1 5 5 N 1.28606 * 109.67249 * 359.97438 * 4 3 2 6 6 C 1.30518 * 109.67142 * 0.02562 * 5 4 3 7 7 C 1.50701 * 126.34840 * 180.02562 * 6 5 4 8 8 N 1.46905 * 109.46931 * 269.97660 * 7 6 5 9 9 C 1.46845 * 111.00004 * 45.78441 * 8 7 6 10 10 C 1.53036 * 109.52256 * 185.84208 * 9 8 7 11 11 C 1.53120 * 109.27646 * 300.82294 * 10 9 8 12 12 C 1.50698 * 109.57251 * 177.58961 * 11 10 9 13 13 H 1.08002 * 120.00369 * 245.70667 * 12 11 10 14 14 C 1.37883 * 120.00315 * 65.71478 * 12 11 10 15 15 N 1.31516 * 119.99383 * 9.55569 * 14 12 11 16 16 Si 1.86796 * 120.00293 * 189.55297 * 14 12 11 17 17 H 1.48498 * 109.47162 * 94.98728 * 16 14 12 18 18 H 1.48502 * 109.46948 * 214.99137 * 16 14 12 19 19 H 1.48506 * 109.46861 * 334.98716 * 16 14 12 20 20 C 1.53116 * 109.16236 * 57.65314 * 11 10 9 21 21 C 1.46836 * 111.00011 * 169.99771 * 8 7 6 22 22 H 1.08997 * 109.46930 * 89.97244 * 1 2 3 23 23 H 1.08997 * 109.47258 * 209.97624 * 1 2 3 24 24 H 1.09004 * 109.47101 * 329.97514 * 1 2 3 25 25 H 1.08003 * 126.34120 * 359.97438 * 3 2 1 26 26 H 1.09001 * 109.46715 * 29.97051 * 7 6 5 27 27 H 1.08991 * 109.47381 * 149.96871 * 7 6 5 28 28 H 1.09007 * 109.46493 * 305.85405 * 9 8 7 29 29 H 1.08997 * 109.46136 * 65.82586 * 9 8 7 30 30 H 1.09000 * 109.50472 * 180.87912 * 10 9 8 31 31 H 1.08999 * 109.53637 * 60.77975 * 10 9 8 32 32 H 1.08997 * 109.52048 * 297.74794 * 11 10 9 33 33 H 0.97003 * 119.99493 * 180.02562 * 15 14 12 34 34 H 1.09005 * 109.50180 * 182.40180 * 20 11 10 35 35 H 1.09004 * 109.53832 * 62.30684 * 20 11 10 36 36 H 1.09005 * 109.46220 * 294.17361 * 21 8 7 37 37 H 1.09005 * 109.46757 * 54.14973 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0824 0.0000 4 7 3.5091 0.6430 -0.0006 5 7 3.5091 -0.6431 -0.0004 6 6 2.2801 -1.0824 -0.0002 7 6 1.8476 -2.5260 0.0006 8 7 1.7066 -2.9957 -1.3842 9 6 2.8560 -2.5826 -2.1996 10 6 2.6081 -2.9607 -3.6616 11 6 2.4032 -4.4746 -3.7645 12 6 2.0999 -4.8471 -5.1929 13 1 1.1312 -5.2481 -5.4524 14 6 3.0591 -4.6762 -6.1686 15 7 4.2925 -4.3688 -5.8312 16 14 2.6067 -4.8814 -7.9693 17 1 2.2840 -3.5545 -8.5528 18 1 3.7514 -5.4794 -8.7022 19 1 1.4249 -5.7734 -8.0842 20 6 1.2313 -4.8853 -2.8687 21 6 1.5191 -4.4513 -1.4297 22 1 -0.3633 0.0005 -1.0276 23 1 -0.3633 -0.8902 0.5134 24 1 -0.3633 0.8898 0.5142 25 1 1.9702 2.1170 -0.0004 26 1 2.5961 -3.1292 0.5144 27 1 0.8911 -2.6185 0.5148 28 1 2.9880 -1.5035 -2.1209 29 1 3.7544 -3.0854 -1.8418 30 1 3.4680 -2.6680 -4.2640 31 1 1.7177 -2.4475 -4.0249 32 1 3.3080 -4.9876 -3.4385 33 1 4.9672 -4.2482 -6.5177 34 1 1.1076 -5.9677 -2.9047 35 1 0.3185 -4.4029 -3.2186 36 1 2.4239 -4.9453 -1.0755 37 1 0.6800 -4.7296 -0.7919 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692794042.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:55 Heat of formation + Delta-G solvation = 59.279375 kcal Electronic energy + Delta-G solvation = -18739.027389 eV Core-core repulsion = 15937.754766 eV Total energy + Delta-G solvation = -2801.272622 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.09786 -39.83997 -36.18146 -35.72345 -33.71813 -31.75956 -31.36540 -28.67986 -28.20231 -26.27662 -23.92127 -23.37998 -23.23761 -21.47501 -20.37411 -18.47547 -17.94505 -17.65115 -16.66024 -16.26344 -16.19651 -15.98302 -15.22020 -14.80310 -14.70923 -14.31296 -14.12288 -13.89159 -13.46350 -13.21866 -13.05683 -12.92332 -12.63326 -12.51925 -12.28122 -12.10232 -11.92876 -11.41108 -11.28770 -11.04808 -10.77872 -10.69799 -10.43156 -10.29215 -9.32918 -8.12649 -6.21597 0.84067 1.39537 1.40857 1.51228 1.67848 1.85939 2.43144 3.00045 3.17616 3.31084 3.77005 3.94451 4.06438 4.14271 4.25445 4.35235 4.39058 4.50284 4.58338 4.69626 4.75018 4.78850 4.80796 4.97868 5.01249 5.05623 5.19567 5.20549 5.29086 5.46367 5.61687 5.87979 5.95100 6.00663 6.09006 6.20060 6.38011 6.92241 7.45673 7.75331 8.96046 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.031155 B = 0.005493 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.511687 B = 5095.925712 C = 5395.509089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.464 5.464 3 C 0.160 3.840 4 N -0.354 5.354 5 N -0.342 5.342 6 C 0.180 3.820 7 C 0.138 3.862 8 N -0.526 5.526 9 C 0.082 3.918 10 C -0.085 4.085 11 C 0.041 3.959 12 C -0.530 4.530 13 H 0.057 0.943 14 C 0.010 3.990 15 N -0.923 5.923 16 Si 0.951 3.049 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.262 1.262 20 C -0.097 4.097 21 C 0.065 3.935 22 H 0.085 0.915 23 H 0.106 0.894 24 H 0.124 0.876 25 H 0.263 0.737 26 H 0.063 0.937 27 H 0.133 0.867 28 H 0.049 0.951 29 H 0.006 0.994 30 H 0.031 0.969 31 H 0.038 0.962 32 H -0.011 1.011 33 H 0.259 0.741 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.023 0.977 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.850 8.065 14.045 20.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.154 5.154 3 C -0.129 4.129 4 N -0.193 5.193 5 N -0.183 5.183 6 C -0.090 4.090 7 C 0.009 3.991 8 N -0.252 5.252 9 C -0.047 4.047 10 C -0.123 4.123 11 C 0.023 3.977 12 C -0.568 4.568 13 H 0.075 0.925 14 C -0.189 4.189 15 N -0.563 5.563 16 Si 0.777 3.223 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.186 1.186 20 C -0.135 4.135 21 C -0.062 4.062 22 H 0.103 0.897 23 H 0.125 0.875 24 H 0.142 0.858 25 H 0.279 0.721 26 H 0.081 0.919 27 H 0.151 0.849 28 H 0.068 0.932 29 H 0.025 0.975 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.007 0.993 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.041 0.959 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.635 8.313 13.786 19.862 hybrid contribution 0.002 -0.296 -1.043 1.084 sum -11.633 8.017 12.743 19.026 Atomic orbital electron populations 1.22495 0.72147 1.07306 1.05388 1.46405 1.10988 1.05426 1.52562 1.27242 0.86253 0.96650 1.02709 1.74116 1.21074 1.03314 1.20774 1.74214 1.19527 1.04108 1.20499 1.24831 0.87094 0.93407 1.03632 1.20631 1.03125 0.84364 0.91006 1.62193 1.40305 1.14240 1.08463 1.21853 0.90413 0.98089 0.94315 1.21338 0.98945 0.99120 0.92942 1.18683 0.93401 0.91655 0.94000 1.21584 0.99076 1.42093 0.94092 0.92473 1.25810 0.94630 0.95158 1.03262 1.70126 1.02312 1.49605 1.34238 0.85645 0.78025 0.78302 0.80340 1.20393 1.21235 1.18616 1.21523 0.98711 0.99621 0.93634 1.22160 1.00771 0.85305 0.98004 0.89657 0.87518 0.85766 0.72108 0.91884 0.84888 0.93249 0.97533 0.94993 0.94336 0.99305 0.93236 0.92204 0.92189 0.95876 0.87269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.65 11.04 127.77 1.41 2.06 16 2 N -0.46 -9.70 3.15 -542.07 -1.71 -11.41 16 3 C 0.16 3.56 12.74 180.11 2.30 5.86 16 4 N -0.35 -11.97 12.21 -59.99 -0.73 -12.70 16 5 N -0.34 -12.66 11.30 -50.15 -0.57 -13.22 16 6 C 0.18 5.19 5.80 137.98 0.80 5.99 16 7 C 0.14 3.49 5.63 85.56 0.48 3.97 16 8 N -0.53 -17.07 4.80 -900.95 -4.32 -21.39 16 9 C 0.08 3.47 4.96 86.33 0.43 3.90 16 10 C -0.08 -4.25 5.19 30.65 0.16 -4.09 16 11 C 0.04 2.12 2.03 -11.46 -0.02 2.09 16 12 C -0.53 -29.78 8.48 25.60 0.22 -29.57 16 13 H 0.06 3.10 7.77 -2.91 -0.02 3.08 16 14 C 0.01 0.56 5.23 84.66 0.44 1.00 16 15 N -0.92 -56.46 12.20 21.45 0.26 -56.19 16 16 Si 0.95 44.72 29.55 68.60 2.03 46.74 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 18 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 19 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 20 C -0.10 -3.83 5.32 30.64 0.16 -3.67 16 21 C 0.06 2.04 5.42 86.33 0.47 2.50 16 22 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.11 0.73 7.20 -2.39 -0.02 0.71 16 24 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 25 H 0.26 2.75 8.06 -2.91 -0.02 2.73 16 26 H 0.06 1.67 8.08 -2.39 -0.02 1.65 16 27 H 0.13 2.15 7.21 -2.39 -0.02 2.13 16 28 H 0.05 2.17 5.97 -2.38 -0.01 2.16 16 29 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.03 1.83 7.00 -2.39 -0.02 1.81 16 31 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 32 H -0.01 -0.66 8.08 -2.39 -0.02 -0.68 16 33 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 34 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 35 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 36 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 37 H 0.11 2.48 8.12 -2.38 -0.02 2.46 16 Total: -1.00 -77.64 299.18 2.85 -74.79 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: 1.04 Total: 3.32 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: 6.84 Total: -9.94 kcal Atomic # 7 Polarization: -107.85 SS G_CDS: -7.07 Total: -114.91 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -77.64 2.85 -74.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692794042.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.072 kcal (2) G-P(sol) polarization free energy of solvation -77.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds