Wall clock time and date at job start Sun Mar 29 2020 22:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47217 * 2 1 4 4 C 1.53008 * 109.46559 * 119.99334 * 2 1 3 5 5 N 1.46897 * 109.46977 * 65.21476 * 4 2 1 6 6 C 1.46899 * 111.00011 * 214.06891 * 5 4 2 7 7 C 1.50700 * 109.47412 * 66.04458 * 6 5 4 8 8 H 1.08011 * 119.99824 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00513 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99431 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00257 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46920 * 59.99550 * 11 9 7 13 13 H 1.48500 * 109.47034 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.46610 * 299.99614 * 11 9 7 15 15 C 1.46901 * 111.00436 * 90.11255 * 5 4 2 16 16 C 1.50700 * 109.46869 * 290.86543 * 15 5 4 17 17 C 1.34845 * 125.89440 * 97.22625 * 16 15 5 18 18 C 1.40887 * 107.42235 * 179.97438 * 17 16 15 19 19 C 1.34856 * 107.41217 * 359.97438 * 18 17 16 20 20 N 1.36338 * 108.22036 * 359.74150 * 19 18 17 21 21 C 1.46498 * 125.63712 * 180.26628 * 20 19 18 22 22 H 1.08993 * 109.47371 * 300.01080 * 1 2 3 23 23 H 1.09008 * 109.46369 * 60.00568 * 1 2 3 24 24 H 1.08999 * 109.47029 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47371 * 239.98920 * 2 1 3 26 26 H 1.08998 * 109.46735 * 179.97438 * 3 2 1 27 27 H 1.09006 * 109.46474 * 299.99023 * 3 2 1 28 28 H 1.08989 * 109.47362 * 59.99153 * 3 2 1 29 29 H 1.08998 * 109.47200 * 305.21490 * 4 2 1 30 30 H 1.09000 * 109.46823 * 185.20933 * 4 2 1 31 31 H 1.09002 * 109.47475 * 186.04271 * 6 5 4 32 32 H 1.09006 * 109.47126 * 306.04635 * 6 5 4 33 33 H 0.97005 * 119.99920 * 180.02562 * 10 9 7 34 34 H 1.09003 * 109.46552 * 50.86153 * 15 5 4 35 35 H 1.08998 * 109.47048 * 170.86044 * 15 5 4 36 36 H 1.08010 * 126.28865 * 359.97438 * 17 16 15 37 37 H 1.08002 * 126.29738 * 180.02562 * 18 17 16 38 38 H 1.08003 * 125.88829 * 179.97438 * 19 18 17 39 39 H 1.08998 * 109.47227 * 270.18436 * 21 20 19 40 40 H 1.09003 * 109.47193 * 30.18597 * 21 20 19 41 41 H 1.09002 * 109.47286 * 150.18423 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 1.6557 -2.1377 1.1882 6 6 1.3669 -2.6632 2.5293 7 6 0.1413 -1.9828 3.0824 8 1 -0.3717 -1.2344 2.4964 9 6 -0.3247 -2.3148 4.3368 10 7 0.3002 -3.2257 5.0505 11 14 -1.8444 -1.4719 5.0220 12 1 -3.0012 -1.7342 4.1285 13 1 -2.1362 -2.0031 6.3777 14 1 -1.6041 -0.0088 5.1043 15 6 2.6931 -2.9364 0.5219 16 6 2.7369 -2.5818 -0.9421 17 6 3.5912 -1.7131 -1.5199 18 6 3.2909 -1.6781 -2.8959 19 6 2.2647 -2.5273 -3.1067 20 7 1.9244 -3.0896 -1.9121 21 6 0.8590 -4.0734 -1.7045 22 1 -0.3634 0.5140 0.8898 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5140 -0.8898 26 1 3.1301 1.4424 0.0005 27 1 1.6768 1.9562 -0.8902 28 1 1.6767 1.9564 0.8898 29 1 1.6023 -0.2640 2.1369 30 1 3.1259 -0.6411 1.2973 31 1 1.1900 -3.7371 2.4684 32 1 2.2161 -2.4715 3.1853 33 1 -0.0278 -3.4597 5.9329 34 1 3.6613 -2.7256 0.9760 35 1 2.4627 -3.9960 0.6325 36 1 4.3639 -1.1479 -1.0197 37 1 3.7910 -1.0816 -3.6445 38 1 1.7960 -2.7301 -4.0583 39 1 -0.0760 -3.5563 -1.4889 40 1 0.7413 -4.6769 -2.6044 41 1 1.1189 -4.7189 -0.8655 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746693607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:45 Heat of formation + Delta-G solvation = 44.686785 kcal Electronic energy + Delta-G solvation = -19451.791628 eV Core-core repulsion = 16753.426567 eV Total energy + Delta-G solvation = -2698.365061 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.94622 -37.18575 -33.93219 -32.52279 -32.44752 -29.75836 -26.83407 -26.47244 -26.00962 -25.63519 -23.43352 -20.72616 -20.19164 -19.30562 -18.67936 -16.68363 -16.04878 -15.34676 -14.69873 -14.48376 -14.08738 -13.78892 -13.53312 -13.05706 -12.98078 -12.60628 -12.29028 -12.06793 -11.99661 -11.84293 -11.71266 -11.60387 -11.38126 -11.05648 -10.88503 -10.70517 -10.63720 -10.20261 -10.07943 -9.73167 -9.66478 -9.20682 -8.44299 -8.17515 -7.54866 -7.20476 -6.02764 -4.03317 2.63343 3.32732 3.34814 3.36896 3.38206 3.40700 4.42986 5.05059 5.08054 5.25366 5.32932 5.46854 5.47127 5.61294 5.65460 5.76573 5.79673 5.93761 5.95530 6.05901 6.13359 6.16528 6.26744 6.46445 6.49138 6.61863 6.64376 6.68345 6.71059 6.80536 7.12063 7.15510 7.30091 7.38282 7.41215 7.63629 7.74760 7.84537 8.09977 8.25305 8.56243 9.05502 9.60780 11.08004 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.024616 B = 0.006851 C = 0.006197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.186227 B = 4085.808810 C = 4516.895121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.101 4.101 3 C -0.142 4.142 4 C 0.071 3.929 5 N -0.529 5.529 6 C 0.194 3.806 7 C -0.504 4.504 8 H 0.066 0.934 9 C 0.055 3.945 10 N -0.900 5.900 11 Si 0.895 3.105 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.115 3.885 16 C 0.054 3.946 17 C -0.204 4.204 18 C -0.202 4.202 19 C -0.029 4.029 20 N -0.435 5.435 21 C 0.078 3.922 22 H 0.044 0.956 23 H 0.029 0.971 24 H 0.064 0.936 25 H 0.088 0.912 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.020 0.980 31 H 0.027 0.973 32 H -0.010 1.010 33 H 0.261 0.739 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.153 0.847 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.529 1.669 -13.321 13.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.120 4.120 3 C -0.200 4.200 4 C -0.057 4.057 5 N -0.254 5.254 6 C 0.069 3.931 7 C -0.542 4.542 8 H 0.085 0.915 9 C -0.146 4.146 10 N -0.540 5.540 11 Si 0.723 3.277 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.203 1.203 15 C -0.014 4.014 16 C -0.059 4.059 17 C -0.229 4.229 18 C -0.227 4.227 19 C -0.159 4.159 20 N -0.110 5.110 21 C -0.064 4.064 22 H 0.064 0.936 23 H 0.048 0.952 24 H 0.083 0.917 25 H 0.106 0.894 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.038 0.962 31 H 0.045 0.955 32 H 0.008 0.992 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.170 0.830 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.796 1.254 -13.337 13.685 hybrid contribution -0.153 0.482 0.946 1.073 sum 2.643 1.736 -12.391 12.789 Atomic orbital electron populations 1.21629 0.95622 1.02110 0.99166 1.21382 0.96056 0.94475 1.00104 1.21780 1.00173 0.97343 1.00670 1.22054 0.96287 0.89234 0.98167 1.62057 1.38659 1.01502 1.23134 1.19746 0.95698 0.95611 0.82035 1.21168 1.10783 1.22072 1.00217 0.91545 1.24971 0.97258 0.95369 0.96958 1.69950 1.40363 1.31871 1.11781 0.86612 0.83380 0.79777 0.77958 1.20249 1.21422 1.20286 1.20589 0.94983 0.98251 0.87538 1.20354 0.94554 1.00081 0.90937 1.20511 1.03860 1.04330 0.94238 1.20712 1.01272 1.04404 0.96327 1.21617 1.02473 1.02455 0.89384 1.43840 1.26969 1.33332 1.06895 1.21929 0.90311 0.91527 1.02622 0.93645 0.95191 0.91664 0.89427 0.93540 0.93618 0.93369 0.90395 0.96155 0.95509 0.99224 0.92944 0.93720 0.91184 0.85597 0.85517 0.82965 0.90571 0.90914 0.89873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.69 37.16 0.32 -2.00 16 2 C -0.10 -1.77 2.78 -90.61 -0.25 -2.02 16 3 C -0.14 -2.16 9.19 37.16 0.34 -1.82 16 4 C 0.07 1.40 4.01 -3.82 -0.02 1.38 16 5 N -0.53 -10.98 3.85 -237.51 -0.91 -11.89 16 6 C 0.19 4.88 4.67 -4.98 -0.02 4.86 16 7 C -0.50 -13.72 8.12 -34.44 -0.28 -14.00 16 8 H 0.07 1.80 7.05 -52.48 -0.37 1.43 16 9 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 10 N -0.90 -26.37 13.29 55.43 0.74 -25.63 16 11 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 C 0.12 2.09 5.03 -4.98 -0.03 2.06 16 16 C 0.05 0.89 4.61 -81.79 -0.38 0.51 16 17 C -0.20 -3.21 8.63 -39.78 -0.34 -3.56 16 18 C -0.20 -2.88 10.79 -39.78 -0.43 -3.30 16 19 C -0.03 -0.40 11.43 -16.75 -0.19 -0.59 16 20 N -0.44 -6.44 3.15 -119.90 -0.38 -6.82 16 21 C 0.08 0.98 10.92 59.85 0.65 1.63 16 22 H 0.04 0.85 8.05 -51.93 -0.42 0.44 16 23 H 0.03 0.48 8.14 -51.92 -0.42 0.06 16 24 H 0.06 1.30 7.76 -51.93 -0.40 0.90 16 25 H 0.09 1.56 4.07 -51.93 -0.21 1.35 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.73 8.14 -51.94 -0.42 0.31 16 29 H 0.08 1.74 6.67 -51.93 -0.35 1.39 16 30 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 31 H 0.03 0.72 7.89 -51.93 -0.41 0.31 16 32 H -0.01 -0.27 8.12 -51.93 -0.42 -0.70 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.04 0.80 7.81 -51.93 -0.41 0.40 16 35 H 0.07 1.25 7.01 -51.93 -0.36 0.88 16 36 H 0.13 1.91 8.06 -52.48 -0.42 1.49 16 37 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.15 1.62 8.06 -52.48 -0.42 1.20 16 39 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 1.07 7.16 -51.93 -0.37 0.70 16 LS Contribution 325.98 15.07 4.91 4.91 Total: -1.00 -29.23 325.98 -8.43 -37.66 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -7.06 Total: 0.66 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -0.72 Total: -15.39 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: -0.56 Total: -44.34 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.23 -8.43 -37.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746693607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.350 kcal (2) G-P(sol) polarization free energy of solvation -29.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds