Wall clock time and date at job start Sun Mar 29 2020 23:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.36760 * 125.16212 * 214.13997 * 3 2 1 5 5 C 1.36715 * 114.73916 * 179.97438 * 4 3 2 6 6 C 1.36738 * 114.74232 * 359.97438 * 5 4 3 7 7 C 1.46782 * 125.15865 * 179.97438 * 6 5 4 8 8 O 1.21582 * 119.99773 * 0.02562 * 7 6 5 9 9 O 1.34853 * 119.99971 * 180.02562 * 7 6 5 10 10 C 1.45194 * 116.99988 * 179.97438 * 9 7 6 11 11 C 1.53010 * 109.47292 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47049 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00087 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99643 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99940 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00209 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47019 * 89.99737 * 16 14 12 18 18 H 1.48496 * 109.46956 * 209.99970 * 16 14 12 19 19 H 1.48506 * 109.46885 * 329.99860 * 16 14 12 20 20 S 1.75833 * 109.68261 * 359.97438 * 6 5 4 21 21 H 1.08000 * 122.63149 * 0.02562 * 4 3 2 22 22 H 1.07995 * 122.63256 * 179.73503 * 5 4 3 23 23 H 1.09000 * 109.47445 * 299.99931 * 10 9 7 24 24 H 1.08996 * 109.47380 * 59.99952 * 10 9 7 25 25 H 1.08996 * 109.46979 * 299.99823 * 11 10 9 26 26 H 1.09005 * 109.46835 * 59.99940 * 11 10 9 27 27 H 0.96997 * 120.00129 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3552 0.9264 0.6275 5 6 4.6999 0.7219 0.4891 6 6 5.0385 -0.3751 -0.2536 7 6 6.4105 -0.8068 -0.5465 8 8 7.3529 -0.1707 -0.1158 9 8 6.6257 -1.9089 -1.2932 10 6 8.0080 -2.2762 -1.5432 11 6 8.0522 -3.5421 -2.4015 12 6 9.4869 -3.9229 -2.6614 13 1 10.2872 -3.3224 -2.2548 14 6 9.7778 -5.0386 -3.4175 15 7 11.0299 -5.3707 -3.6448 16 14 8.3936 -6.0776 -4.1203 17 1 8.0258 -5.5675 -5.4656 18 1 8.8415 -7.4890 -4.2314 19 1 7.2131 -6.0020 -3.2225 20 16 3.5812 -1.1901 -0.8046 21 1 2.9466 1.7535 1.1890 22 1 5.4369 1.3777 0.9285 23 1 8.5106 -1.4639 -2.0683 24 1 8.5118 -2.4621 -0.5947 25 1 7.5496 -4.3545 -1.8768 26 1 7.5485 -3.3556 -3.3501 27 1 11.2346 -6.1558 -4.1764 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750398224.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:10:01 Heat of formation + Delta-G solvation = -26.827118 kcal Electronic energy + Delta-G solvation = -14552.796078 eV Core-core repulsion = 11788.864866 eV Total energy + Delta-G solvation = -2763.931211 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.040 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.18556 -38.36279 -36.79501 -36.17795 -33.39274 -31.19786 -30.46564 -26.74492 -25.03640 -22.26689 -21.12471 -20.75184 -19.06553 -17.67882 -16.77049 -16.39440 -16.26209 -15.83924 -14.61476 -14.52657 -14.24835 -13.76396 -13.70817 -13.27394 -13.19657 -12.68060 -12.60588 -12.41012 -11.64463 -11.46181 -11.30868 -10.83071 -10.78297 -10.20177 -10.01533 -9.82686 -9.41747 -9.29898 -9.09345 -8.67457 -6.17835 -4.19748 -0.40465 0.65481 1.27724 1.60518 2.44692 2.72408 2.74874 2.88507 3.24163 3.32099 3.35185 3.40568 4.33844 4.65912 4.78481 4.86555 5.15565 5.34859 5.55644 5.74526 5.82165 5.86036 6.33741 6.54171 6.96150 7.05480 7.12926 7.55091 7.81946 8.33554 8.83360 9.41221 10.94526 Molecular weight = 251.04amu Principal moments of inertia in cm(-1) A = 0.035008 B = 0.004392 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.623430 B = 6373.092551 C = 7152.269438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C 0.280 3.720 3 C -0.149 4.149 4 C -0.075 4.075 5 C -0.066 4.066 6 C -0.213 4.213 7 C 0.529 3.471 8 O -0.492 6.492 9 O -0.357 6.357 10 C 0.084 3.916 11 C -0.010 4.010 12 C -0.529 4.529 13 H 0.076 0.924 14 C 0.073 3.927 15 N -0.895 5.895 16 Si 0.881 3.119 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.263 1.263 20 S 0.297 5.703 21 H 0.160 0.840 22 H 0.166 0.834 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.029 0.971 26 H 0.025 0.975 27 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.669 10.745 7.323 20.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.074 5.074 2 C -0.036 4.036 3 C -0.271 4.271 4 C -0.111 4.111 5 C -0.099 4.099 6 C -0.334 4.334 7 C 0.371 3.629 8 O -0.381 6.381 9 O -0.273 6.273 10 C 0.012 3.988 11 C -0.047 4.047 12 C -0.567 4.567 13 H 0.094 0.906 14 C -0.130 4.130 15 N -0.533 5.533 16 Si 0.707 3.293 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.187 1.187 20 S 0.568 5.432 21 H 0.178 0.822 22 H 0.183 0.817 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.047 0.953 26 H 0.043 0.957 27 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.257 9.394 6.412 20.668 hybrid contribution 0.344 0.681 0.436 0.879 sum -16.913 10.076 6.848 20.844 Atomic orbital electron populations 1.81325 1.11057 1.07090 1.07965 1.24226 0.90835 0.94386 0.94138 1.20764 0.89659 1.05226 1.11421 1.20454 0.91778 0.99282 0.99621 1.20506 0.96158 0.96038 0.97156 1.24103 0.95983 1.03421 1.09907 1.19591 0.87167 0.79619 0.76543 1.90890 1.43123 1.54529 1.49585 1.86564 1.35815 1.41180 1.63789 1.23519 0.74982 0.99368 1.00923 1.19651 0.98924 0.91321 0.94819 1.20808 0.90019 1.11920 1.33966 0.90565 1.24933 0.95604 0.96999 0.95420 1.69887 1.17678 1.26596 1.39117 0.86762 0.82826 0.79679 0.80010 1.20020 1.21129 1.18735 1.84781 0.91835 1.21858 1.44771 0.82239 0.81679 0.91240 0.91211 0.95259 0.95688 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -4.60 18.54 41.84 0.78 -3.82 15 2 C 0.28 2.66 15.81 -22.47 -0.36 2.31 15 3 C -0.15 -1.21 6.31 -38.19 -0.24 -1.45 15 4 C -0.08 -0.50 10.10 -40.67 -0.41 -0.91 15 5 C -0.07 -0.56 9.88 -40.67 -0.40 -0.96 15 6 C -0.21 -2.39 6.45 -36.67 -0.24 -2.63 15 7 C 0.53 8.13 7.94 34.18 0.27 8.40 15 8 O -0.49 -8.65 16.61 -19.33 -0.32 -8.97 15 9 O -0.36 -6.19 10.07 -40.91 -0.41 -6.60 15 10 C 0.08 1.68 5.42 37.16 0.20 1.88 15 11 C -0.01 -0.22 4.42 -27.88 -0.12 -0.35 15 12 C -0.53 -14.53 9.66 -34.44 -0.33 -14.86 15 13 H 0.08 2.24 7.99 -52.49 -0.42 1.82 15 14 C 0.07 2.06 5.47 -17.82 -0.10 1.96 15 15 N -0.90 -26.69 13.96 55.43 0.77 -25.92 15 16 Si 0.88 20.80 27.47 -169.99 -4.67 16.13 15 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 15 19 H -0.26 -5.93 6.54 56.52 0.37 -5.56 15 20 S 0.30 2.80 23.09 -107.50 -2.48 0.32 15 21 H 0.16 0.62 8.06 -52.49 -0.42 0.20 15 22 H 0.17 1.20 8.03 -52.49 -0.42 0.78 15 23 H 0.07 1.38 8.14 -51.93 -0.42 0.96 15 24 H 0.07 1.39 8.14 -51.93 -0.42 0.96 15 25 H 0.03 0.67 7.20 -51.93 -0.37 0.29 15 26 H 0.02 0.56 7.57 -51.93 -0.39 0.17 15 27 H 0.27 7.41 8.31 -40.82 -0.34 7.07 15 LS Contribution 275.37 15.07 4.15 4.15 Total: -1.00 -30.94 275.37 -5.95 -36.89 By element: Atomic # 1 Polarization: -3.53 SS G_CDS: -2.04 Total: -5.57 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -1.73 Total: -6.60 kcal Atomic # 7 Polarization: -31.29 SS G_CDS: 1.55 Total: -29.74 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.73 Total: -15.57 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.13 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -2.48 Total: 0.32 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.94 -5.95 -36.89 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750398224.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.062 kcal (2) G-P(sol) polarization free energy of solvation -30.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds