Wall clock time and date at job start Sun Mar 29 2020 23:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.36760 * 125.16212 * 214.13997 * 3 2 1 5 5 C 1.36715 * 114.73916 * 179.97438 * 4 3 2 6 6 C 1.36738 * 114.74232 * 359.97438 * 5 4 3 7 7 C 1.46782 * 125.15865 * 179.97438 * 6 5 4 8 8 O 1.21582 * 119.99773 * 0.02562 * 7 6 5 9 9 O 1.34853 * 119.99971 * 180.02562 * 7 6 5 10 10 C 1.45194 * 116.99988 * 179.97438 * 9 7 6 11 11 C 1.53010 * 109.47292 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47049 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00087 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99643 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99940 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00209 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47019 * 89.99737 * 16 14 12 18 18 H 1.48496 * 109.46956 * 209.99970 * 16 14 12 19 19 H 1.48506 * 109.46885 * 329.99860 * 16 14 12 20 20 S 1.75833 * 109.68261 * 359.97438 * 6 5 4 21 21 H 1.08000 * 122.63149 * 0.02562 * 4 3 2 22 22 H 1.07995 * 122.63256 * 179.73503 * 5 4 3 23 23 H 1.09000 * 109.47445 * 299.99931 * 10 9 7 24 24 H 1.08996 * 109.47380 * 59.99952 * 10 9 7 25 25 H 1.08996 * 109.46979 * 299.99823 * 11 10 9 26 26 H 1.09005 * 109.46835 * 59.99940 * 11 10 9 27 27 H 0.96997 * 120.00129 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3552 0.9264 0.6275 5 6 4.6999 0.7219 0.4891 6 6 5.0385 -0.3751 -0.2536 7 6 6.4105 -0.8068 -0.5465 8 8 7.3529 -0.1707 -0.1158 9 8 6.6257 -1.9089 -1.2932 10 6 8.0080 -2.2762 -1.5432 11 6 8.0522 -3.5421 -2.4015 12 6 9.4869 -3.9229 -2.6614 13 1 10.2872 -3.3224 -2.2548 14 6 9.7778 -5.0386 -3.4175 15 7 11.0299 -5.3707 -3.6448 16 14 8.3936 -6.0776 -4.1203 17 1 8.0258 -5.5675 -5.4656 18 1 8.8415 -7.4890 -4.2314 19 1 7.2131 -6.0020 -3.2225 20 16 3.5812 -1.1901 -0.8046 21 1 2.9466 1.7535 1.1890 22 1 5.4369 1.3777 0.9285 23 1 8.5106 -1.4639 -2.0683 24 1 8.5118 -2.4621 -0.5947 25 1 7.5496 -4.3545 -1.8768 26 1 7.5485 -3.3556 -3.3501 27 1 11.2346 -6.1558 -4.1764 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750398224.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:10:01 Heat of formation + Delta-G solvation = -45.107100 kcal Electronic energy + Delta-G solvation = -14553.588757 eV Core-core repulsion = 11788.864866 eV Total energy + Delta-G solvation = -2764.723891 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.44515 -39.15297 -37.84067 -37.29418 -35.38892 -32.89083 -31.52812 -27.92854 -26.53952 -23.43606 -22.49910 -21.86323 -20.12322 -19.15606 -18.39202 -17.63376 -17.25627 -16.94896 -16.29481 -15.49492 -15.33279 -15.10500 -14.86551 -14.51988 -14.26637 -13.93520 -13.60974 -13.28034 -13.22797 -13.12500 -12.51327 -12.47717 -12.05418 -11.81425 -11.73002 -11.52402 -11.45756 -10.79880 -10.07935 -9.77699 -8.32925 -6.40989 -1.18203 -0.09158 0.53986 0.81938 1.39732 1.41201 1.51908 1.54083 1.69807 1.71320 2.14335 2.35418 2.65717 3.02196 3.59254 3.99185 4.18262 4.19054 4.25237 4.62473 4.74652 4.84111 5.04705 5.15561 5.30042 5.42307 5.52595 6.16715 6.21681 6.52641 6.65564 7.24043 8.82871 Molecular weight = 251.04amu Principal moments of inertia in cm(-1) A = 0.035008 B = 0.004392 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.623430 B = 6373.092551 C = 7152.269438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.302 3.698 3 C -0.138 4.138 4 C -0.055 4.055 5 C -0.041 4.041 6 C -0.245 4.245 7 C 0.530 3.470 8 O -0.522 6.522 9 O -0.358 6.358 10 C 0.095 3.905 11 C -0.005 4.005 12 C -0.541 4.541 13 H 0.037 0.963 14 C 0.012 3.988 15 N -0.944 5.944 16 Si 0.951 3.049 17 H -0.264 1.264 18 H -0.283 1.283 19 H -0.242 1.242 20 S 0.295 5.705 21 H 0.198 0.802 22 H 0.180 0.820 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.037 0.963 26 H 0.035 0.965 27 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.351 11.445 7.790 22.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.110 5.110 2 C -0.014 4.014 3 C -0.260 4.260 4 C -0.091 4.091 5 C -0.075 4.075 6 C -0.366 4.366 7 C 0.375 3.625 8 O -0.413 6.413 9 O -0.275 6.275 10 C 0.022 3.978 11 C -0.043 4.043 12 C -0.579 4.579 13 H 0.056 0.944 14 C -0.186 4.186 15 N -0.583 5.583 16 Si 0.774 3.226 17 H -0.189 1.189 18 H -0.208 1.208 19 H -0.165 1.165 20 S 0.566 5.434 21 H 0.215 0.785 22 H 0.197 0.803 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.964 10.104 6.884 23.410 hybrid contribution 1.179 0.589 0.375 1.370 sum -18.785 10.693 7.259 22.801 Atomic orbital electron populations 1.81363 1.12151 1.08271 1.09182 1.24220 0.90771 0.93311 0.93067 1.20749 0.88900 1.05146 1.11228 1.20760 0.90509 0.99363 0.98419 1.20793 0.97232 0.94521 0.94919 1.23833 0.94254 1.05543 1.12929 1.20148 0.88713 0.78387 0.75295 1.90874 1.44547 1.55130 1.50732 1.86529 1.33662 1.42567 1.64736 1.23047 0.76593 0.98066 1.00053 1.19488 0.95981 0.92859 0.95928 1.21106 0.91622 1.11589 1.33581 0.94432 1.25936 0.98387 0.98495 0.95811 1.70038 1.20271 1.27578 1.40426 0.85642 0.79736 0.77472 0.79772 1.18866 1.20833 1.16526 1.84819 0.91240 1.22193 1.45140 0.78509 0.80304 0.91826 0.91831 0.94509 0.94623 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -9.14 18.54 19.00 0.35 -8.79 15 2 C 0.30 4.92 15.81 88.33 1.40 6.32 15 3 C -0.14 -1.79 6.31 23.17 0.15 -1.64 15 4 C -0.05 -0.49 10.10 21.57 0.22 -0.28 15 5 C -0.04 -0.55 9.88 21.56 0.21 -0.34 15 6 C -0.25 -5.02 6.45 24.15 0.16 -4.86 15 7 C 0.53 15.89 7.94 70.06 0.56 16.45 15 8 O -0.52 -18.23 16.61 19.57 0.32 -17.91 15 9 O -0.36 -12.19 10.07 -57.66 -0.58 -12.77 15 10 C 0.10 3.83 5.42 71.99 0.39 4.22 15 11 C -0.01 -0.23 4.42 29.85 0.13 -0.10 15 12 C -0.54 -30.37 9.66 25.60 0.25 -30.12 15 13 H 0.04 2.32 7.99 -2.91 -0.02 2.30 15 14 C 0.01 0.67 5.47 84.66 0.46 1.13 15 15 N -0.94 -57.66 13.96 21.45 0.30 -57.36 15 16 Si 0.95 42.31 27.47 68.60 1.88 44.19 15 17 H -0.26 -11.23 7.11 99.48 0.71 -10.52 15 18 H -0.28 -12.37 7.11 99.48 0.71 -11.66 15 19 H -0.24 -9.87 6.54 99.48 0.65 -9.22 15 20 S 0.29 4.93 23.09 -56.49 -1.30 3.63 15 21 H 0.20 0.39 8.06 -2.91 -0.02 0.37 15 22 H 0.18 1.98 8.03 -2.91 -0.02 1.95 15 23 H 0.06 2.59 8.14 -2.39 -0.02 2.57 15 24 H 0.06 2.59 8.14 -2.39 -0.02 2.57 15 25 H 0.04 1.61 7.20 -2.39 -0.02 1.60 15 26 H 0.04 1.54 7.57 -2.38 -0.02 1.52 15 27 H 0.27 15.30 8.31 -92.71 -0.77 14.53 15 Total: -1.00 -68.27 275.37 6.04 -62.22 By element: Atomic # 1 Polarization: -5.14 SS G_CDS: 1.15 Total: -3.99 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: 3.92 Total: -9.23 kcal Atomic # 7 Polarization: -66.80 SS G_CDS: 0.65 Total: -66.15 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.26 Total: -30.67 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 1.88 Total: 44.19 kcal Atomic # 16 Polarization: 4.93 SS G_CDS: -1.30 Total: 3.63 kcal Total: -68.27 6.04 -62.22 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750398224.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.117 kcal (2) G-P(sol) polarization free energy of solvation -68.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds