Wall clock time and date at job start Sun Mar 29 2020 23:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46900 * 109.46988 * 2 1 4 4 C 1.46903 * 110.99760 * 75.64767 * 3 2 1 5 5 C 1.53004 * 109.46960 * 199.69908 * 4 3 2 6 6 C 1.52997 * 109.47247 * 174.87526 * 5 4 3 7 7 C 1.52991 * 117.50009 * 116.25373 * 6 5 4 8 8 C 1.53002 * 117.49885 * 184.91690 * 6 5 4 9 9 C 1.46903 * 110.99576 * 199.59861 * 3 2 1 10 10 C 1.52995 * 109.47331 * 66.05200 * 9 3 2 11 11 H 1.09009 * 109.46767 * 305.00062 * 10 9 3 12 12 C 1.47201 * 109.47299 * 64.99392 * 10 9 3 13 13 N 4.43041 * 98.63910 * 309.40981 * 2 1 3 14 14 C 1.52999 * 109.47361 * 184.99871 * 10 9 3 15 15 C 1.50700 * 109.47242 * 174.99562 * 14 10 9 16 16 H 1.08007 * 119.99686 * 0.02562 * 15 14 10 17 17 C 1.37873 * 119.99946 * 179.97438 * 15 14 10 18 18 N 1.31512 * 120.00063 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00011 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47005 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47125 * 120.00129 * 19 17 15 22 22 H 1.48495 * 109.47116 * 240.00403 * 19 17 15 23 23 H 1.08996 * 109.46823 * 294.83950 * 1 2 3 24 24 H 1.08999 * 109.46835 * 54.83950 * 1 2 3 25 25 H 1.09000 * 109.47020 * 174.83293 * 1 2 3 26 26 H 1.08997 * 109.47025 * 240.00249 * 2 1 3 27 27 H 1.08996 * 109.46764 * 120.00193 * 2 1 3 28 28 H 1.09004 * 109.46872 * 79.70361 * 4 3 2 29 29 H 1.08989 * 109.47194 * 319.69983 * 4 3 2 30 30 H 1.09005 * 109.46621 * 54.87420 * 5 4 3 31 31 H 1.09003 * 109.47093 * 294.87751 * 5 4 3 32 32 H 1.09008 * 115.54720 * 330.58496 * 6 5 4 33 33 H 1.08998 * 117.50215 * 215.00221 * 7 6 5 34 34 H 1.09004 * 117.50036 * 0.02757 * 7 6 5 35 35 H 1.08993 * 117.49700 * 359.97166 * 8 6 5 36 36 H 1.08998 * 117.49437 * 144.99794 * 8 6 5 37 37 H 1.09001 * 109.46934 * 186.04717 * 9 3 2 38 38 H 1.08994 * 109.47424 * 306.04617 * 9 3 2 39 39 H 1.09001 * 109.46662 * 294.99578 * 14 10 9 40 40 H 1.08998 * 109.46963 * 54.99816 * 14 10 9 41 41 H 0.97006 * 119.99645 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8746 1.9946 1.3287 5 6 1.9165 3.5185 1.1979 6 6 1.6381 4.1552 2.5610 7 6 2.7569 4.9836 3.1955 8 6 1.5219 5.6797 2.6181 9 6 3.4133 1.4506 -0.4600 10 6 3.4844 1.0395 -1.9320 11 1 3.0313 0.0560 -2.0568 12 6 2.7570 2.0223 -2.7516 13 7 2.1955 2.7808 -3.3842 14 6 4.9473 0.9873 -2.3769 15 6 5.0248 0.4647 -3.7883 16 1 4.1209 0.1970 -4.3154 17 6 6.2495 0.3294 -4.4070 18 7 7.3500 0.6558 -3.7653 19 14 6.3456 -0.3191 -6.1562 20 1 4.9766 -0.6122 -6.6514 21 1 6.9789 0.7022 -7.0287 22 1 7.1576 -1.5622 -6.1794 23 1 -0.3633 0.4317 0.9326 24 1 -0.3633 0.5918 -0.8402 25 1 -0.3633 -1.0235 -0.0926 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.6898 1.6626 1.9717 29 1 0.9222 1.6934 1.7646 30 1 1.1593 3.8427 0.4839 31 1 2.9017 3.8262 0.8476 32 1 0.9998 3.5763 3.2286 33 1 2.8548 4.9499 4.2805 34 1 3.6913 5.0754 2.6416 35 1 1.6443 6.2290 1.6847 36 1 0.8072 6.1038 3.3234 37 1 3.7850 2.4692 -0.3490 38 1 4.0250 0.7737 0.1362 39 1 5.3753 1.9890 -2.3363 40 1 5.5054 0.3265 -1.7137 41 1 8.2117 0.5602 -4.2006 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760879412.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:40 Heat of formation + Delta-G solvation = 31.144626 kcal Electronic energy + Delta-G solvation = -18192.862325 eV Core-core repulsion = 15493.910032 eV Total energy + Delta-G solvation = -2698.952293 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.69765 -37.33900 -35.70605 -33.62952 -31.91504 -31.53478 -29.07309 -26.41027 -23.60219 -23.24453 -22.46635 -21.68383 -20.53222 -20.38484 -16.75206 -16.50983 -15.85249 -15.41145 -15.18468 -14.49047 -14.37682 -13.98909 -13.58768 -13.45724 -12.87050 -12.58398 -12.31660 -11.99965 -11.81919 -11.74042 -11.64267 -11.50211 -11.32581 -11.20552 -11.11308 -10.98391 -10.72621 -10.64813 -10.47365 -10.31570 -9.98143 -9.89534 -9.51196 -9.18767 -8.45406 -8.14333 -6.09093 -4.12047 3.28821 3.37114 3.41876 3.68853 3.77184 3.87008 3.99772 4.41761 4.65153 4.83418 4.85875 4.94255 5.10843 5.13987 5.29240 5.34352 5.34606 5.44285 5.52879 5.57806 5.67801 5.76116 5.77375 5.81668 5.85470 5.99438 6.00963 6.02544 6.10605 6.18209 6.33362 6.36590 6.43743 6.54944 7.25402 7.27190 7.43834 7.54221 7.86525 8.24236 8.62781 8.93056 9.53532 11.01879 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.023728 B = 0.004725 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.758685 B = 5924.122366 C = 6427.620403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.043 3.957 3 N -0.543 5.543 4 C 0.060 3.940 5 C -0.086 4.086 6 C -0.148 4.148 7 C -0.183 4.183 8 C -0.183 4.183 9 C 0.061 3.939 10 C 0.009 3.991 11 H 0.100 0.900 12 C 0.258 3.742 13 N -0.481 5.481 14 C 0.031 3.969 15 C -0.525 4.525 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.283 1.283 23 H 0.048 0.952 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.082 0.918 27 H 0.034 0.966 28 H 0.036 0.964 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.052 0.948 39 H 0.026 0.974 40 H 0.037 0.963 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.933 1.622 14.646 17.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.084 4.084 3 N -0.267 5.267 4 C -0.068 4.068 5 C -0.124 4.124 6 C -0.167 4.167 7 C -0.220 4.220 8 C -0.220 4.220 9 C -0.068 4.068 10 C -0.013 4.013 11 H 0.118 0.882 12 C -0.059 4.059 13 N -0.158 5.158 14 C -0.008 4.008 15 C -0.563 4.563 16 H 0.075 0.925 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.718 3.282 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.209 1.209 23 H 0.068 0.932 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.101 0.899 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.044 0.956 40 H 0.055 0.945 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.885 3.032 13.340 17.483 hybrid contribution 0.948 -1.064 -0.164 1.434 sum -9.937 1.968 13.177 16.621 Atomic orbital electron populations 1.21760 0.95297 1.01169 1.02021 1.22173 0.95862 0.89023 1.01374 1.62054 1.21055 1.18055 1.25568 1.22068 1.00772 0.94416 0.89512 1.21170 1.02446 0.94401 0.94383 1.22300 1.02314 0.93163 0.98914 1.23055 0.93668 1.04977 1.00259 1.22958 1.00909 0.95090 1.03026 1.22262 0.87792 1.02190 0.94520 1.19283 0.98682 0.93778 0.89539 0.88237 1.28832 0.91471 0.93323 0.92293 1.80974 1.12118 1.11547 1.11134 1.19176 0.86013 0.98582 0.97002 1.21184 0.92778 1.43731 0.98604 0.92455 1.24948 0.95746 0.95285 0.97969 1.69951 0.97792 1.48072 1.37247 0.86547 0.78236 0.78603 0.84777 1.19652 1.20966 1.20862 0.93250 0.91914 0.92616 0.89944 0.94733 0.94586 0.91066 0.90792 0.91681 0.88075 0.89164 0.88692 0.88789 0.89125 0.90266 0.92957 0.95604 0.94509 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.96 37.16 0.37 -1.21 16 2 C 0.04 0.53 5.55 -3.82 -0.02 0.50 16 3 N -0.54 -7.35 4.07 -234.63 -0.95 -8.31 16 4 C 0.06 0.69 4.77 -3.82 -0.02 0.67 16 5 C -0.09 -1.01 5.53 -26.73 -0.15 -1.15 16 6 C -0.15 -1.47 5.73 -90.62 -0.52 -1.99 16 7 C -0.18 -1.72 10.18 -26.70 -0.27 -1.99 16 8 C -0.18 -1.73 10.26 -26.69 -0.27 -2.00 16 9 C 0.06 0.93 4.15 -3.82 -0.02 0.91 16 10 C 0.01 0.17 2.16 -93.41 -0.20 -0.03 16 11 H 0.10 1.76 6.08 -51.92 -0.32 1.44 16 12 C 0.26 5.46 13.67 -20.76 -0.28 5.18 16 13 N -0.48 -11.03 18.54 42.16 0.78 -10.25 16 14 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 15 C -0.52 -14.04 8.60 -34.44 -0.30 -14.33 16 16 H 0.06 1.53 7.59 -52.48 -0.40 1.14 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -25.59 13.29 55.43 0.74 -24.86 16 19 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H 0.05 0.49 6.89 -51.93 -0.36 0.14 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 1.06 5.82 -51.93 -0.30 0.76 16 27 H 0.03 0.38 8.00 -51.93 -0.42 -0.03 16 28 H 0.04 0.40 8.00 -51.93 -0.42 -0.01 16 29 H 0.07 0.74 6.55 -51.94 -0.34 0.40 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.83 6.69 -51.93 -0.35 0.48 16 32 H 0.10 0.91 8.08 -51.92 -0.42 0.49 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.09 0.94 8.03 -51.93 -0.42 0.52 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.08 1.23 6.71 -51.93 -0.35 0.88 16 38 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 337.18 15.07 5.08 5.08 Total: -1.00 -29.52 337.18 -8.29 -37.81 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -7.02 Total: -2.59 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -1.90 Total: -13.23 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 0.56 Total: -43.41 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.52 -8.29 -37.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760879412.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.953 kcal (2) G-P(sol) polarization free energy of solvation -29.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds