Wall clock time and date at job start Sun Mar 29 2020 23:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46903 * 109.46913 * 2 1 4 4 C 1.46895 * 110.99720 * 296.81098 * 3 2 1 5 5 C 1.52997 * 109.47548 * 288.85930 * 4 3 2 6 6 C 1.53006 * 109.47399 * 185.12008 * 5 4 3 7 7 C 1.52996 * 117.49895 * 243.74655 * 6 5 4 8 8 C 1.52998 * 117.49628 * 175.08483 * 6 5 4 9 9 C 1.46892 * 111.00417 * 60.76662 * 3 2 1 10 10 C 1.53001 * 109.47217 * 78.35509 * 9 3 2 11 11 H 1.08999 * 109.46974 * 52.73283 * 10 9 3 12 12 C 1.47198 * 109.47597 * 292.73196 * 10 9 3 13 13 N 3.12456 * 98.45560 * 104.94414 * 2 1 3 14 14 C 1.53002 * 109.47488 * 172.72783 * 10 9 3 15 15 C 1.50693 * 109.47267 * 185.00432 * 14 10 9 16 16 H 1.07999 * 120.00255 * 0.02562 * 15 14 10 17 17 C 1.37879 * 119.99704 * 179.72843 * 15 14 10 18 18 N 1.31510 * 120.00262 * 0.26985 * 17 15 14 19 19 Si 1.86807 * 120.00062 * 180.27653 * 17 15 14 20 20 H 1.48501 * 109.47042 * 89.99372 * 19 17 15 21 21 H 1.48500 * 109.47141 * 209.99764 * 19 17 15 22 22 H 1.48502 * 109.46541 * 329.99674 * 19 17 15 23 23 H 1.09003 * 109.46651 * 185.00381 * 1 2 3 24 24 H 1.09000 * 109.47576 * 305.00212 * 1 2 3 25 25 H 1.09003 * 109.47062 * 65.00718 * 1 2 3 26 26 H 1.09005 * 109.47726 * 239.99919 * 2 1 3 27 27 H 1.09001 * 109.47470 * 119.99253 * 2 1 3 28 28 H 1.08997 * 109.47227 * 48.86214 * 4 3 2 29 29 H 1.09003 * 109.47283 * 168.85968 * 4 3 2 30 30 H 1.08997 * 109.47219 * 305.12632 * 5 4 3 31 31 H 1.09002 * 109.47224 * 65.12322 * 5 4 3 32 32 H 1.08999 * 115.54493 * 29.42127 * 6 5 4 33 33 H 1.09000 * 117.50195 * 0.02562 * 7 6 5 34 34 H 1.08998 * 117.49533 * 145.02208 * 7 6 5 35 35 H 1.08998 * 117.49836 * 214.97840 * 8 6 5 36 36 H 1.09002 * 117.50320 * 0.02562 * 8 6 5 37 37 H 1.09002 * 109.47284 * 318.36232 * 9 3 2 38 38 H 1.08996 * 109.47510 * 198.36005 * 9 3 2 39 39 H 1.09004 * 109.46871 * 65.00230 * 14 10 9 40 40 H 1.09004 * 109.46665 * 305.00687 * 14 10 9 41 41 H 0.97003 * 120.00045 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0195 1.3850 0.0000 4 6 1.6118 2.0875 -1.2240 5 6 2.4026 1.5400 -2.4138 6 6 2.0721 2.3564 -3.6650 7 6 1.3812 1.6296 -4.8205 8 6 2.8514 2.0378 -4.9425 9 6 1.5636 2.1047 1.1967 10 6 2.4290 1.7043 2.3932 11 1 3.4811 1.8386 2.1418 12 6 2.1809 0.2925 2.7279 13 7 1.9894 -0.7970 2.9861 14 6 2.0758 2.5830 3.5949 15 6 3.0106 2.2734 4.7356 16 1 3.7800 1.5251 4.6155 17 6 2.8875 2.9498 5.9308 18 7 1.9509 3.8614 6.0770 19 14 4.0511 2.5716 7.3423 20 1 5.2426 3.4532 7.2514 21 1 3.3569 2.8090 8.6334 22 1 4.4789 1.1516 7.2641 23 1 -0.3633 -1.0238 0.0896 24 1 -0.3634 0.5895 0.8418 25 1 -0.3633 0.4342 -0.9315 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 0.5463 1.9328 -1.3939 29 1 1.8112 3.1535 -1.1147 30 1 3.4699 1.6118 -2.2046 31 1 2.1342 0.4967 -2.5794 32 1 1.7980 3.3965 -3.4887 33 1 1.1616 0.5700 -4.6893 34 1 0.6527 2.1918 -5.4048 35 1 3.0896 2.8683 -5.6070 36 1 3.5993 1.2465 -4.8918 37 1 0.5233 1.8501 1.3995 38 1 1.6489 3.1783 1.0296 39 1 1.0492 2.3831 3.9019 40 1 2.1746 3.6329 3.3188 41 1 1.8646 4.3376 6.9177 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760879415.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:42 Heat of formation + Delta-G solvation = 42.722834 kcal Electronic energy + Delta-G solvation = -18199.714689 eV Core-core repulsion = 15501.264465 eV Total energy + Delta-G solvation = -2698.450224 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.99981 -37.52788 -35.73008 -33.79732 -31.97586 -31.08156 -29.01689 -26.36406 -24.27712 -23.37458 -22.55031 -21.65796 -20.57035 -19.81136 -16.88622 -16.46648 -15.94809 -15.67148 -15.47030 -14.58178 -14.22169 -13.97341 -13.71803 -13.12284 -13.02980 -12.65337 -12.43678 -12.17535 -11.99408 -11.80278 -11.64852 -11.46055 -11.42048 -11.32768 -10.96630 -10.87556 -10.72269 -10.63069 -10.46974 -10.23249 -10.13758 -9.93824 -9.44861 -9.20605 -8.43848 -8.09190 -6.08039 -4.10899 3.30525 3.37197 3.42003 3.60792 3.63565 3.69149 4.01304 4.42829 4.60554 4.75548 4.77913 4.83389 5.02468 5.21421 5.24928 5.30128 5.38565 5.42694 5.43803 5.51788 5.58354 5.65355 5.71525 5.77219 5.82869 5.91402 6.04044 6.06806 6.13783 6.18140 6.24886 6.36369 6.48888 6.60015 7.25006 7.25459 7.45589 7.55878 7.87384 8.25487 8.45003 8.93781 9.54467 11.02872 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.033282 B = 0.004149 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.102820 B = 6746.344354 C = 7095.929164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.030 3.970 3 N -0.536 5.536 4 C 0.053 3.947 5 C -0.084 4.084 6 C -0.148 4.148 7 C -0.185 4.185 8 C -0.182 4.182 9 C 0.055 3.945 10 C 0.009 3.991 11 H 0.109 0.891 12 C 0.254 3.746 13 N -0.483 5.483 14 C 0.032 3.968 15 C -0.525 4.525 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.278 1.278 21 H -0.286 1.286 22 H -0.274 1.274 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.038 0.962 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.049 0.951 38 H 0.090 0.910 39 H 0.023 0.977 40 H 0.039 0.961 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.427 -1.205 -19.143 19.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.098 4.098 3 N -0.259 5.259 4 C -0.075 4.075 5 C -0.122 4.122 6 C -0.166 4.166 7 C -0.222 4.222 8 C -0.219 4.219 9 C -0.073 4.073 10 C -0.013 4.013 11 H 0.127 0.873 12 C -0.061 4.061 13 N -0.161 5.161 14 C -0.007 4.007 15 C -0.563 4.563 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.204 1.204 21 H -0.212 1.212 22 H -0.199 1.199 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.106 0.894 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.122 0.878 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.067 0.933 38 H 0.108 0.892 39 H 0.042 0.958 40 H 0.057 0.943 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.268 -2.737 -18.606 18.849 hybrid contribution -0.256 0.294 0.754 0.849 sum -1.524 -2.443 -17.851 18.082 Atomic orbital electron populations 1.22395 0.98515 1.02281 1.01868 1.22524 0.93020 0.90714 1.03564 1.62278 1.59517 1.02163 1.01958 1.22161 0.97453 0.98408 0.89473 1.21157 1.01206 0.98197 0.91644 1.22330 1.04270 1.00167 0.89867 1.23040 0.95404 1.00923 1.02799 1.22956 0.94662 1.03543 1.00745 1.22365 0.97469 0.98882 0.88628 1.19324 1.01897 0.83389 0.96687 0.87277 1.29156 0.91990 0.94699 0.90276 1.81024 1.10248 1.13598 1.11200 1.19167 0.97698 0.94267 0.89525 1.21152 1.16152 1.21600 0.97419 0.92502 1.24951 0.95483 0.94930 0.98611 1.69937 1.32568 1.24697 1.25897 0.86598 0.80971 0.78855 0.81708 1.20437 1.21192 1.19868 0.92410 0.91907 0.92642 0.91137 0.89398 0.94349 0.90665 0.90560 0.92145 0.87790 0.88998 0.89156 0.89021 0.88868 0.93341 0.89173 0.95825 0.94296 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.49 9.31 37.15 0.35 -2.14 16 2 C 0.03 0.42 5.55 -3.83 -0.02 0.40 16 3 N -0.54 -7.29 4.58 -234.64 -1.08 -8.36 16 4 C 0.05 0.59 4.78 -3.83 -0.02 0.57 16 5 C -0.08 -0.84 5.42 -26.73 -0.14 -0.99 16 6 C -0.15 -1.30 5.73 -90.62 -0.52 -1.82 16 7 C -0.18 -1.50 10.18 -26.69 -0.27 -1.77 16 8 C -0.18 -1.47 10.25 -26.69 -0.27 -1.74 16 9 C 0.06 0.83 4.53 -3.83 -0.02 0.82 16 10 C 0.01 0.17 2.40 -93.41 -0.22 -0.05 16 11 H 0.11 1.99 8.14 -51.93 -0.42 1.57 16 12 C 0.25 5.22 11.18 -20.76 -0.23 4.99 16 13 N -0.48 -10.56 17.54 42.15 0.74 -9.82 16 14 C 0.03 0.75 4.42 -27.89 -0.12 0.62 16 15 C -0.53 -14.06 8.60 -34.44 -0.30 -14.36 16 16 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -25.61 13.29 55.43 0.74 -24.87 16 19 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.89 5.87 -51.93 -0.30 0.59 16 25 H 0.05 0.63 6.50 -51.93 -0.34 0.30 16 26 H 0.07 0.89 6.65 -51.93 -0.35 0.55 16 27 H 0.09 1.45 4.20 -51.93 -0.22 1.23 16 28 H 0.04 0.42 6.01 -51.93 -0.31 0.11 16 29 H 0.07 0.80 7.68 -51.93 -0.40 0.40 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.62 6.62 -51.93 -0.34 0.27 16 32 H 0.10 0.88 8.08 -51.93 -0.42 0.46 16 33 H 0.09 0.74 8.03 -51.93 -0.42 0.32 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.05 0.75 5.51 -51.93 -0.29 0.46 16 38 H 0.09 1.25 7.60 -51.93 -0.39 0.85 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 327.88 15.07 4.94 4.94 Total: -1.00 -28.88 327.88 -8.27 -37.15 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -6.69 Total: -1.57 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -1.89 Total: -13.85 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: 0.40 Total: -43.06 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.88 -8.27 -37.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760879415.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.874 kcal (2) G-P(sol) polarization free energy of solvation -28.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds