Wall clock time and date at job start Sun Mar 29 2020 23:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46903 * 109.46913 * 2 1 4 4 C 1.46895 * 110.99720 * 296.81098 * 3 2 1 5 5 C 1.52997 * 109.47548 * 288.85930 * 4 3 2 6 6 C 1.53006 * 109.47399 * 185.12008 * 5 4 3 7 7 C 1.52996 * 117.49895 * 243.74655 * 6 5 4 8 8 C 1.52998 * 117.49628 * 175.08483 * 6 5 4 9 9 C 1.46892 * 111.00417 * 60.76662 * 3 2 1 10 10 C 1.53001 * 109.47217 * 78.35509 * 9 3 2 11 11 H 1.08999 * 109.46974 * 52.73283 * 10 9 3 12 12 C 1.47198 * 109.47597 * 292.73196 * 10 9 3 13 13 N 3.12456 * 98.45560 * 104.94414 * 2 1 3 14 14 C 1.53002 * 109.47488 * 172.72783 * 10 9 3 15 15 C 1.50693 * 109.47267 * 185.00432 * 14 10 9 16 16 H 1.07999 * 120.00255 * 0.02562 * 15 14 10 17 17 C 1.37879 * 119.99704 * 179.72843 * 15 14 10 18 18 N 1.31510 * 120.00262 * 0.26985 * 17 15 14 19 19 Si 1.86807 * 120.00062 * 180.27653 * 17 15 14 20 20 H 1.48501 * 109.47042 * 89.99372 * 19 17 15 21 21 H 1.48500 * 109.47141 * 209.99764 * 19 17 15 22 22 H 1.48502 * 109.46541 * 329.99674 * 19 17 15 23 23 H 1.09003 * 109.46651 * 185.00381 * 1 2 3 24 24 H 1.09000 * 109.47576 * 305.00212 * 1 2 3 25 25 H 1.09003 * 109.47062 * 65.00718 * 1 2 3 26 26 H 1.09005 * 109.47726 * 239.99919 * 2 1 3 27 27 H 1.09001 * 109.47470 * 119.99253 * 2 1 3 28 28 H 1.08997 * 109.47227 * 48.86214 * 4 3 2 29 29 H 1.09003 * 109.47283 * 168.85968 * 4 3 2 30 30 H 1.08997 * 109.47219 * 305.12632 * 5 4 3 31 31 H 1.09002 * 109.47224 * 65.12322 * 5 4 3 32 32 H 1.08999 * 115.54493 * 29.42127 * 6 5 4 33 33 H 1.09000 * 117.50195 * 0.02562 * 7 6 5 34 34 H 1.08998 * 117.49533 * 145.02208 * 7 6 5 35 35 H 1.08998 * 117.49836 * 214.97840 * 8 6 5 36 36 H 1.09002 * 117.50320 * 0.02562 * 8 6 5 37 37 H 1.09002 * 109.47284 * 318.36232 * 9 3 2 38 38 H 1.08996 * 109.47510 * 198.36005 * 9 3 2 39 39 H 1.09004 * 109.46871 * 65.00230 * 14 10 9 40 40 H 1.09004 * 109.46665 * 305.00687 * 14 10 9 41 41 H 0.97003 * 120.00045 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0195 1.3850 0.0000 4 6 1.6118 2.0875 -1.2240 5 6 2.4026 1.5400 -2.4138 6 6 2.0721 2.3564 -3.6650 7 6 1.3812 1.6296 -4.8205 8 6 2.8514 2.0378 -4.9425 9 6 1.5636 2.1047 1.1967 10 6 2.4290 1.7043 2.3932 11 1 3.4811 1.8386 2.1418 12 6 2.1809 0.2925 2.7279 13 7 1.9894 -0.7970 2.9861 14 6 2.0758 2.5830 3.5949 15 6 3.0106 2.2734 4.7356 16 1 3.7800 1.5251 4.6155 17 6 2.8875 2.9498 5.9308 18 7 1.9509 3.8614 6.0770 19 14 4.0511 2.5716 7.3423 20 1 5.2426 3.4532 7.2514 21 1 3.3569 2.8090 8.6334 22 1 4.4789 1.1516 7.2641 23 1 -0.3633 -1.0238 0.0896 24 1 -0.3634 0.5895 0.8418 25 1 -0.3633 0.4342 -0.9315 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 0.5463 1.9328 -1.3939 29 1 1.8112 3.1535 -1.1147 30 1 3.4699 1.6118 -2.2046 31 1 2.1342 0.4967 -2.5794 32 1 1.7980 3.3965 -3.4887 33 1 1.1616 0.5700 -4.6893 34 1 0.6527 2.1918 -5.4048 35 1 3.0896 2.8683 -5.6070 36 1 3.5993 1.2465 -4.8918 37 1 0.5233 1.8501 1.3995 38 1 1.6489 3.1783 1.0296 39 1 1.0492 2.3831 3.9019 40 1 2.1746 3.6329 3.3188 41 1 1.8646 4.3376 6.9177 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760879415.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:42 Heat of formation + Delta-G solvation = 27.334722 kcal Electronic energy + Delta-G solvation = -18200.381968 eV Core-core repulsion = 15501.264465 eV Total energy + Delta-G solvation = -2699.117503 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.14278 -38.39513 -37.13407 -35.63382 -33.75271 -32.02454 -30.31431 -27.98327 -25.43379 -24.71415 -23.38443 -23.13681 -21.38262 -20.81063 -18.48850 -18.33431 -17.10793 -16.59913 -16.49767 -16.37880 -15.30720 -15.07772 -14.94185 -14.54060 -14.21721 -14.00435 -13.95586 -13.79235 -13.35280 -13.06516 -12.91175 -12.73876 -12.58497 -12.40067 -12.33960 -12.30392 -12.15071 -11.94749 -11.76261 -11.62929 -11.25801 -11.22445 -10.83587 -10.65624 -10.53953 -9.17770 -8.18756 -6.26847 1.40714 1.42234 1.51633 1.98917 2.02388 2.42010 2.90081 3.04478 3.16362 3.29130 3.85882 4.00117 4.11149 4.14146 4.17273 4.24898 4.36656 4.43181 4.49965 4.58312 4.66316 4.74596 4.81693 4.82849 4.85458 4.95578 4.99504 5.09398 5.13979 5.19555 5.26021 5.32244 5.37372 5.48113 5.53121 5.64373 5.80371 6.10502 6.20204 6.26104 6.78409 6.88532 7.41604 8.92124 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.033282 B = 0.004149 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.102820 B = 6746.344354 C = 7095.929164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.031 3.969 3 N -0.540 5.540 4 C 0.055 3.945 5 C -0.077 4.077 6 C -0.155 4.155 7 C -0.183 4.183 8 C -0.182 4.182 9 C 0.064 3.936 10 C 0.020 3.980 11 H 0.118 0.882 12 C 0.262 3.738 13 N -0.508 5.508 14 C 0.039 3.961 15 C -0.539 4.539 16 H 0.052 0.948 17 C 0.012 3.988 18 N -0.923 5.923 19 Si 0.948 3.052 20 H -0.266 1.266 21 H -0.284 1.284 22 H -0.277 1.277 23 H 0.057 0.943 24 H 0.047 0.953 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.061 0.939 28 H 0.044 0.956 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.046 0.954 38 H 0.107 0.893 39 H -0.001 1.001 40 H 0.037 0.963 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.042 -0.921 -20.486 20.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.097 4.097 3 N -0.263 5.263 4 C -0.073 4.073 5 C -0.115 4.115 6 C -0.173 4.173 7 C -0.220 4.220 8 C -0.219 4.219 9 C -0.065 4.065 10 C -0.002 4.002 11 H 0.136 0.864 12 C -0.053 4.053 13 N -0.187 5.187 14 C 0.001 3.999 15 C -0.577 4.577 16 H 0.070 0.930 17 C -0.187 4.187 18 N -0.563 5.563 19 Si 0.774 3.226 20 H -0.191 1.191 21 H -0.210 1.210 22 H -0.202 1.202 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.092 0.908 26 H 0.102 0.898 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.127 0.873 33 H 0.109 0.891 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.110 0.890 37 H 0.064 0.936 38 H 0.125 0.875 39 H 0.018 0.982 40 H 0.055 0.945 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.876 -2.456 -19.965 20.135 hybrid contribution -0.378 0.188 1.132 1.208 sum -1.254 -2.268 -18.833 19.011 Atomic orbital electron populations 1.22333 0.97787 1.02210 1.02130 1.22455 0.93595 0.90796 1.02870 1.62213 1.59689 1.02076 1.02274 1.22225 0.97917 0.98631 0.88488 1.21059 1.00418 0.98239 0.91749 1.22296 1.05174 1.00293 0.89561 1.23100 0.95652 1.00961 1.02309 1.23026 0.94710 1.03822 1.00314 1.22223 0.96360 0.99916 0.87992 1.19238 1.03119 0.81470 0.96419 0.86400 1.29482 0.91266 0.94977 0.89594 1.81011 1.11156 1.14470 1.12023 1.18982 0.95571 0.94960 0.90429 1.21547 1.16403 1.21097 0.98654 0.92951 1.25704 0.96955 0.94983 1.01061 1.70029 1.33997 1.25683 1.26597 0.85695 0.79492 0.78500 0.78893 1.19112 1.20961 1.20163 0.92379 0.93393 0.90825 0.89763 0.92067 0.93797 0.89836 0.91426 0.92373 0.87305 0.89057 0.88280 0.88109 0.88950 0.93619 0.87476 0.98212 0.94524 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.57 9.31 71.98 0.67 -3.90 16 2 C 0.03 0.83 5.55 86.30 0.48 1.31 16 3 N -0.54 -13.76 4.58 -896.27 -4.11 -17.87 16 4 C 0.05 1.09 4.78 86.30 0.41 1.50 16 5 C -0.08 -1.38 5.42 30.60 0.17 -1.22 16 6 C -0.15 -2.37 5.73 -10.79 -0.06 -2.44 16 7 C -0.18 -2.56 10.18 30.62 0.31 -2.25 16 8 C -0.18 -2.55 10.25 30.62 0.31 -2.24 16 9 C 0.06 1.85 4.53 86.31 0.39 2.24 16 10 C 0.02 0.72 2.40 -12.60 -0.03 0.69 16 11 H 0.12 4.18 8.14 -2.39 -0.02 4.16 16 12 C 0.26 10.73 11.18 89.44 1.00 11.73 16 13 N -0.51 -22.32 17.54 20.00 0.35 -21.97 16 14 C 0.04 1.84 4.42 29.85 0.13 1.97 16 15 C -0.54 -28.89 8.60 25.60 0.22 -28.67 16 16 H 0.05 2.80 7.59 -2.91 -0.02 2.77 16 17 C 0.01 0.66 5.46 84.66 0.46 1.12 16 18 N -0.92 -53.19 13.29 21.45 0.28 -52.91 16 19 Si 0.95 43.74 29.54 68.60 2.03 45.76 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 21 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 23 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.05 1.32 5.87 -2.39 -0.01 1.30 16 25 H 0.07 1.52 6.50 -2.39 -0.02 1.50 16 26 H 0.08 1.99 6.65 -2.38 -0.02 1.98 16 27 H 0.06 1.99 4.20 -2.39 -0.01 1.98 16 28 H 0.04 0.85 6.01 -2.39 -0.01 0.83 16 29 H 0.08 1.55 7.68 -2.39 -0.02 1.54 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.06 1.07 6.62 -2.39 -0.02 1.05 16 32 H 0.11 1.58 8.08 -2.39 -0.02 1.56 16 33 H 0.09 1.29 8.03 -2.39 -0.02 1.27 16 34 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.09 1.30 8.14 -2.39 -0.02 1.29 16 37 H 0.05 1.37 5.51 -2.39 -0.01 1.36 16 38 H 0.11 2.75 7.60 -2.39 -0.02 2.73 16 39 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 40 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 41 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -60.64 327.88 4.02 -56.62 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 1.00 Total: 10.50 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: 4.47 Total: -20.14 kcal Atomic # 7 Polarization: -89.28 SS G_CDS: -3.47 Total: -92.75 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -60.64 4.02 -56.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760879415.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.952 kcal (2) G-P(sol) polarization free energy of solvation -60.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds