Wall clock time and date at job start Sun Mar 29 2020 23:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86802 * 119.99814 * 2 1 4 4 H 1.48502 * 109.47176 * 270.00413 * 3 2 1 5 5 H 1.48504 * 109.46867 * 30.00000 * 3 2 1 6 6 H 1.48495 * 109.47261 * 149.99863 * 3 2 1 7 7 C 1.38809 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99949 * 359.97438 * 7 2 1 9 9 O 1.34849 * 120.00016 * 179.97438 * 7 2 1 10 10 C 1.34776 * 117.00154 * 180.02562 * 9 7 2 11 11 O 1.21551 * 119.99737 * 359.97438 * 10 9 7 12 12 C 1.47330 * 120.00086 * 180.02562 * 10 9 7 13 13 C 1.39355 * 120.23816 * 359.97438 * 12 10 9 14 14 C 1.38614 * 120.23896 * 179.97438 * 13 12 10 15 15 F 1.35102 * 119.62083 * 179.97438 * 14 13 12 16 16 C 1.37853 * 120.75339 * 0.02562 * 14 13 12 17 17 C 1.40101 * 120.15308 * 359.97438 * 16 14 13 18 18 N 1.35404 * 132.99742 * 180.02562 * 17 16 14 19 19 N 1.28653 * 110.11440 * 179.97438 * 18 17 16 20 20 N 1.40247 * 109.42935 * 359.97438 * 19 18 17 21 21 H 0.97004 * 126.67254 * 180.02562 * 20 19 18 22 22 C 1.37025 * 106.66396 * 0.02562 * 20 19 18 23 23 H 0.96998 * 120.00360 * 359.97438 * 1 2 3 24 24 H 1.08007 * 119.88033 * 359.69755 * 13 12 10 25 25 H 1.08002 * 119.92341 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4403 0.7000 7 6 2.0083 -1.2021 -0.0005 8 1 1.4683 -2.1374 -0.0005 9 8 3.3568 -1.2021 -0.0011 10 6 3.9687 -2.4029 -0.0021 11 8 3.3067 -3.4223 -0.0021 12 6 5.4400 -2.4800 -0.0022 13 6 6.2038 -1.3144 -0.0017 14 6 7.5880 -1.3869 -0.0012 15 9 8.3163 -0.2489 -0.0012 16 6 8.2300 -2.6068 -0.0017 17 6 7.4857 -3.7937 -0.0022 18 7 7.8341 -5.1022 -0.0023 19 7 6.7806 -5.8406 -0.0023 20 7 5.6395 -5.0253 -0.0016 21 1 4.7158 -5.3215 -0.0010 22 6 6.0829 -3.7287 -0.0017 23 1 -0.4850 0.8400 0.0004 24 1 5.7154 -0.3510 -0.0062 25 1 9.3093 -2.6476 -0.0017 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800262072.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:12:33 Heat of formation + Delta-G solvation = -31.610276 kcal Electronic energy + Delta-G solvation = -17472.285903 eV Core-core repulsion = 14174.226853 eV Total energy + Delta-G solvation = -3298.059050 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.049 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.98983 -43.41555 -41.27575 -38.49365 -37.54370 -34.73491 -34.59504 -32.16739 -30.96233 -28.00240 -25.94092 -24.67850 -23.69193 -22.24041 -20.30960 -19.77980 -19.24644 -18.64579 -17.63438 -17.34639 -16.78525 -16.74025 -16.66139 -16.38254 -15.93243 -14.95069 -14.66814 -14.58095 -14.13254 -13.57033 -13.40228 -13.35368 -12.87756 -12.51052 -12.47833 -12.41698 -12.32894 -11.87987 -11.42525 -10.89408 -10.23798 -9.64994 -8.61671 -6.46867 -1.18159 -0.20816 0.56237 1.16068 1.34125 1.35651 1.52557 1.57636 2.00136 2.24787 2.25176 2.55541 2.89237 3.08611 3.32828 3.49888 3.58447 3.93853 4.05762 4.40017 4.59022 4.66394 4.72614 5.32572 5.37575 5.68328 5.80131 6.34941 6.61069 6.71332 7.38240 8.49805 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.025786 B = 0.007448 C = 0.005791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.615332 B = 3758.353280 C = 4834.126785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.021 3.979 3 Si 0.976 3.024 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.239 1.239 7 C -0.404 4.404 8 H 0.064 0.936 9 O -0.234 6.234 10 C 0.451 3.549 11 O -0.570 6.570 12 C -0.091 4.091 13 C -0.033 4.033 14 C 0.090 3.910 15 F -0.119 7.119 16 C -0.019 4.019 17 C -0.010 4.010 18 N -0.212 5.212 19 N -0.004 5.004 20 N -0.474 5.474 21 H 0.460 0.540 22 C 0.118 3.882 23 H 0.293 0.707 24 H 0.171 0.829 25 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.074 0.396 0.021 17.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.181 4.181 3 Si 0.795 3.205 4 H -0.181 1.181 5 H -0.192 1.192 6 H -0.162 1.162 7 C -0.480 4.480 8 H 0.082 0.918 9 O -0.142 6.142 10 C 0.300 3.700 11 O -0.468 6.468 12 C -0.097 4.097 13 C -0.056 4.056 14 C 0.067 3.933 15 F -0.097 7.097 16 C -0.041 4.041 17 C -0.134 4.134 18 N -0.092 5.092 19 N 0.014 4.986 20 N -0.198 5.198 21 H 0.310 0.690 22 C -0.008 4.008 23 H 0.103 0.897 24 H 0.189 0.811 25 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 17.285 -1.161 0.024 17.324 hybrid contribution -1.714 1.035 -0.017 2.002 sum 15.571 -0.126 0.007 15.572 Atomic orbital electron populations 1.69672 1.07739 1.30657 1.46370 1.25597 0.95930 1.02830 0.93755 0.85180 0.79619 0.75550 0.80188 1.18120 1.19193 1.16152 1.20374 0.77098 0.96136 1.54345 0.91823 1.83498 1.22451 1.31274 1.76980 1.20903 0.88691 0.82221 0.78153 1.90611 1.67501 1.36712 1.51957 1.17673 0.88645 0.90996 1.12409 1.21661 0.92702 0.98999 0.92212 1.16717 0.87729 0.82496 1.06335 1.91589 1.76585 1.47422 1.94121 1.20685 1.02866 0.86178 0.94400 1.19624 0.89175 0.92909 1.11708 1.74852 1.20416 1.00988 1.12920 1.81579 0.86258 1.15510 1.15228 1.47988 1.11302 1.02937 1.57584 0.68956 1.19146 0.94796 0.86171 1.00655 0.89736 0.81148 0.78713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.89 13.96 21.63 0.30 -51.59 15 2 C 0.02 1.12 5.50 84.89 0.47 1.59 15 3 Si 0.98 39.72 28.62 68.60 1.96 41.69 15 4 H -0.26 -9.90 7.11 99.48 0.71 -9.20 15 5 H -0.27 -10.32 7.11 99.48 0.71 -9.61 15 6 H -0.24 -8.91 7.11 99.48 0.71 -8.20 15 7 C -0.40 -23.23 10.11 67.96 0.69 -22.54 15 8 H 0.06 4.18 7.09 -2.91 -0.02 4.16 15 9 O -0.23 -11.46 7.81 10.95 0.09 -11.37 15 10 C 0.45 20.10 7.83 70.21 0.55 20.65 15 11 O -0.57 -28.32 14.52 19.67 0.29 -28.03 15 12 C -0.09 -3.04 5.88 -20.08 -0.12 -3.16 15 13 C -0.03 -0.88 9.58 22.63 0.22 -0.66 15 14 C 0.09 1.86 7.26 22.27 0.16 2.02 15 15 F -0.12 -2.29 17.25 44.97 0.78 -1.51 15 16 C -0.02 -0.35 10.06 22.63 0.23 -0.13 15 17 C -0.01 -0.25 7.26 39.58 0.29 0.03 15 18 N -0.21 -5.92 12.40 -52.20 -0.65 -6.56 15 19 N 0.00 -0.12 13.83 37.02 0.51 0.40 15 20 N -0.47 -14.69 7.32 -51.05 -0.37 -15.06 15 21 H 0.46 14.19 7.72 -213.22 -1.65 12.54 15 22 C 0.12 3.67 6.94 39.41 0.27 3.95 15 23 H 0.29 15.06 8.31 -92.71 -0.77 14.29 15 24 H 0.17 4.32 7.59 -2.91 -0.02 4.30 15 25 H 0.20 2.22 8.06 -2.91 -0.02 2.20 15 Total: -1.00 -65.11 246.19 5.29 -59.82 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -0.36 Total: 10.49 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 2.75 Total: 1.74 kcal Atomic # 7 Polarization: -72.61 SS G_CDS: -0.21 Total: -72.82 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: 0.37 Total: -39.40 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.78 Total: -1.51 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 1.96 Total: 41.69 kcal Total: -65.11 5.29 -59.82 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800262072.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.205 kcal (2) G-P(sol) polarization free energy of solvation -65.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds