Wall clock time and date at job start Sun Mar 29 2020 23:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46494 * 109.47545 * 2 1 4 4 C 1.36938 * 119.99810 * 275.37722 * 3 2 1 5 5 H 1.08000 * 119.99935 * 37.86321 * 4 3 2 6 6 C 1.38815 * 120.00166 * 217.86363 * 4 3 2 7 7 N 1.31621 * 119.99835 * 20.86728 * 6 4 3 8 8 Si 1.86796 * 120.00012 * 200.87268 * 6 4 3 9 9 H 1.48497 * 109.47314 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47052 * 119.99803 * 8 6 4 11 11 H 1.48505 * 109.47037 * 239.99747 * 8 6 4 12 12 C 1.46496 * 120.00208 * 95.36990 * 3 2 1 13 13 C 1.53002 * 109.47529 * 270.00446 * 12 3 2 14 14 C 1.53004 * 115.55798 * 325.68821 * 13 12 3 15 15 C 1.53070 * 117.49299 * 111.39692 * 13 12 3 16 16 C 1.52999 * 117.49963 * 180.02562 * 13 12 3 17 17 Cl 1.80303 * 117.49924 * 145.02017 * 16 13 12 18 18 Cl 1.80298 * 117.49810 * 0.02562 * 16 13 12 19 19 H 1.09005 * 109.47158 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47427 * 300.00611 * 1 2 3 21 21 H 1.08999 * 109.46619 * 60.00424 * 1 2 3 22 22 H 1.09000 * 109.47427 * 239.99388 * 2 1 3 23 23 H 1.09002 * 109.46942 * 119.99974 * 2 1 3 24 24 H 0.97001 * 120.00108 * 179.97438 * 7 6 4 25 25 H 1.08999 * 109.47135 * 150.00489 * 12 3 2 26 26 H 1.08996 * 109.47310 * 30.00562 * 12 3 2 27 27 H 1.08998 * 109.47055 * 274.30556 * 14 13 12 28 28 H 1.08998 * 109.47138 * 34.31433 * 14 13 12 29 29 H 1.09001 * 109.46843 * 154.31109 * 14 13 12 30 30 H 1.08997 * 117.49874 * 0.02562 * 15 13 12 31 31 H 1.09000 * 117.53166 * 214.95655 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1419 2.0637 -1.1807 5 1 1.4059 1.9320 -1.9601 6 6 3.2130 2.9248 -1.3759 7 7 4.3023 2.7955 -0.6486 8 14 3.1083 4.2671 -2.6707 9 1 1.7881 4.2004 -3.3473 10 1 3.2664 5.5937 -2.0224 11 1 4.1876 4.0739 -3.6724 12 6 2.3746 2.0322 1.2631 13 6 1.1446 2.7376 1.8380 14 6 0.1860 3.3378 0.8074 15 6 0.5359 2.1641 3.1201 16 6 1.3126 3.4822 3.1639 17 17 0.3654 4.9993 3.3926 18 17 2.9450 3.4619 3.9291 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3632 0.5138 -0.8900 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 5.0510 3.3970 -0.7852 25 1 3.1628 2.7636 1.0852 26 1 2.7276 1.2826 1.9713 27 1 0.5242 4.3378 0.5359 28 1 0.1664 2.7070 -0.0812 29 1 -0.8155 3.3963 1.2337 30 1 1.0122 1.2849 3.5538 31 1 -0.5474 2.2145 3.2298 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827635665.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:21:55 Heat of formation + Delta-G solvation = 26.594310 kcal Electronic energy + Delta-G solvation = -15386.801054 eV Core-core repulsion = 12756.542908 eV Total energy + Delta-G solvation = -2630.258146 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 251.054 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.30218 -35.91168 -35.52544 -34.58783 -31.87911 -29.21277 -27.66090 -26.04057 -23.47921 -21.90161 -20.56011 -18.57133 -16.72375 -15.66180 -14.87761 -14.48389 -13.86751 -13.65615 -13.09225 -12.75742 -12.43778 -12.30099 -11.86283 -11.48326 -11.34070 -11.16964 -10.99468 -10.80793 -10.77830 -10.64422 -10.50265 -10.35389 -10.21480 -9.99353 -9.80039 -9.32547 -8.99287 -8.47529 -6.61138 -5.82588 -3.42398 1.64729 2.72491 3.34420 3.44344 3.44886 3.79035 4.44276 4.72909 4.93186 5.31157 5.51572 5.67931 5.77353 5.96856 6.03110 6.22173 6.35726 6.36750 6.56075 6.62256 6.77625 6.83200 6.88838 7.12648 7.23455 7.60649 7.79638 8.48330 9.14547 9.76756 10.34712 11.17304 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.019484 B = 0.009896 C = 0.008569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.718033 B = 2828.663926 C = 3266.907836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.140 3.860 3 N -0.577 5.577 4 C -0.261 4.261 5 H 0.062 0.938 6 C 0.018 3.982 7 N -0.882 5.882 8 Si 0.890 3.110 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.289 1.289 12 C 0.177 3.823 13 C -0.073 4.073 14 C -0.110 4.110 15 C -0.154 4.154 16 C 0.000 4.000 17 Cl -0.122 7.122 18 Cl -0.107 7.107 19 H 0.034 0.966 20 H 0.046 0.954 21 H 0.049 0.951 22 H 0.045 0.955 23 H 0.033 0.967 24 H 0.256 0.744 25 H 0.111 0.889 26 H 0.034 0.966 27 H 0.057 0.943 28 H 0.102 0.898 29 H 0.036 0.964 30 H 0.109 0.891 31 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.725 -0.713 6.821 9.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.014 3.986 3 N -0.296 5.296 4 C -0.391 4.391 5 H 0.080 0.920 6 C -0.183 4.183 7 N -0.523 5.523 8 Si 0.719 3.281 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.216 1.216 12 C 0.049 3.951 13 C -0.077 4.077 14 C -0.167 4.167 15 C -0.192 4.192 16 C -0.052 4.052 17 Cl -0.095 7.095 18 Cl -0.080 7.080 19 H 0.053 0.947 20 H 0.065 0.935 21 H 0.068 0.932 22 H 0.063 0.937 23 H 0.051 0.949 24 H 0.066 0.934 25 H 0.128 0.872 26 H 0.052 0.948 27 H 0.076 0.924 28 H 0.121 0.879 29 H 0.055 0.945 30 H 0.127 0.873 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.479 -0.529 6.867 9.456 hybrid contribution -0.003 1.033 -0.246 1.062 sum -6.482 0.503 6.621 9.280 Atomic orbital electron populations 1.22367 1.00013 0.98998 1.01288 1.20868 0.91741 0.87163 0.98808 1.43702 1.75659 1.08081 1.02147 1.18940 1.04525 1.21606 0.93982 0.92049 1.25176 0.94242 1.01079 0.97825 1.69968 1.03212 1.37279 1.41884 0.86436 0.77783 0.82480 0.81402 1.19933 1.21250 1.21630 1.20674 0.91969 0.96459 0.85968 1.23773 1.01628 0.95208 0.87120 1.21416 0.94444 1.01493 0.99357 1.24169 0.99768 0.92942 1.02352 1.27344 0.85006 0.85945 1.06868 1.98694 1.73214 1.40019 1.97550 1.98716 1.27557 1.98169 1.83605 0.94653 0.93491 0.93205 0.93698 0.94870 0.93418 0.87201 0.94758 0.92448 0.87911 0.94489 0.87276 0.87637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 9.44 37.16 0.35 -2.45 16 2 C 0.14 2.76 6.44 -4.05 -0.03 2.74 16 3 N -0.58 -13.13 1.72 -173.25 -0.30 -13.43 16 4 C -0.26 -6.58 7.46 -15.06 -0.11 -6.69 16 5 H 0.06 1.56 7.91 -52.49 -0.42 1.14 16 6 C 0.02 0.47 4.97 -17.43 -0.09 0.38 16 7 N -0.88 -24.43 11.46 55.49 0.64 -23.79 16 8 Si 0.89 20.87 29.60 -169.99 -5.03 15.84 16 9 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 C 0.18 3.86 4.56 -4.04 -0.02 3.84 16 13 C -0.07 -1.35 2.35 -154.47 -0.36 -1.72 16 14 C -0.11 -2.05 8.32 37.16 0.31 -1.74 16 15 C -0.15 -2.37 9.51 -26.67 -0.25 -2.62 16 16 C 0.00 0.00 3.61 -26.71 -0.10 -0.09 16 17 Cl -0.12 -1.98 28.32 -51.86 -1.47 -3.45 16 18 Cl -0.11 -1.89 28.32 -51.86 -1.47 -3.36 16 19 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 20 H 0.05 0.77 7.82 -51.93 -0.41 0.36 16 21 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 22 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 23 H 0.03 0.62 7.83 -51.93 -0.41 0.21 16 24 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 25 H 0.11 2.80 5.52 -51.93 -0.29 2.52 16 26 H 0.03 0.73 7.61 -51.93 -0.40 0.34 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.10 2.09 4.83 -51.93 -0.25 1.84 16 29 H 0.04 0.60 7.90 -51.93 -0.41 0.19 16 30 H 0.11 1.58 8.05 -51.93 -0.42 1.16 16 31 H 0.11 1.44 8.05 -51.93 -0.42 1.03 16 LS Contribution 283.74 15.07 4.28 4.28 Total: -1.00 -26.09 283.74 -7.88 -33.97 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -4.23 Total: -1.70 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -0.30 Total: -8.36 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.34 Total: -37.23 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Atomic # 17 Polarization: -3.87 SS G_CDS: -2.94 Total: -6.81 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -26.09 -7.88 -33.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827635665.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.568 kcal (2) G-P(sol) polarization free energy of solvation -26.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds