Wall clock time and date at job start Sun Mar 29 2020 23:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46957 * 2 1 4 4 C 1.36937 * 120.00029 * 86.49462 * 3 2 1 5 5 H 1.08000 * 119.99944 * 205.26675 * 4 3 2 6 6 C 1.38810 * 119.99942 * 25.27531 * 4 3 2 7 7 N 1.31616 * 120.00236 * 41.99138 * 6 4 3 8 8 Si 1.86802 * 119.99705 * 221.99643 * 6 4 3 9 9 H 1.48500 * 109.47116 * 269.99908 * 8 6 4 10 10 H 1.48499 * 109.47458 * 149.99652 * 8 6 4 11 11 H 1.48500 * 109.47190 * 29.99657 * 8 6 4 12 12 C 1.46502 * 119.99701 * 266.49881 * 3 2 1 13 13 C 1.52998 * 109.46976 * 269.99799 * 12 3 2 14 14 C 1.53006 * 115.54764 * 34.33060 * 13 12 3 15 15 C 1.53003 * 117.49984 * 248.62567 * 13 12 3 16 16 C 1.52999 * 117.50162 * 179.97438 * 13 12 3 17 17 Cl 1.80298 * 117.50030 * 214.97830 * 16 13 12 18 18 Cl 1.80301 * 117.49615 * 0.02562 * 16 13 12 19 19 H 1.09001 * 109.47249 * 60.00679 * 1 2 3 20 20 H 1.09001 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.47888 * 300.00200 * 1 2 3 22 22 H 1.08997 * 109.47376 * 239.99890 * 2 1 3 23 23 H 1.09008 * 109.46917 * 119.99412 * 2 1 3 24 24 H 0.96996 * 120.00566 * 6.38878 * 7 6 4 25 25 H 1.09003 * 109.46938 * 29.99530 * 12 3 2 26 26 H 1.08999 * 109.47125 * 150.00182 * 12 3 2 27 27 H 1.08997 * 109.47234 * 85.58506 * 14 13 12 28 28 H 1.09003 * 109.46740 * 205.57974 * 14 13 12 29 29 H 1.08996 * 109.47167 * 325.57853 * 14 13 12 30 30 H 1.08996 * 117.49547 * 359.97438 * 15 13 12 31 31 H 1.08998 * 117.50058 * 145.02240 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1781 2.0510 1.1837 5 1 2.1340 3.1299 1.2039 6 6 2.3971 1.3432 2.3575 7 7 3.2161 0.3129 2.3617 8 14 1.5291 1.8528 3.9312 9 1 2.3665 2.8379 4.6616 10 1 1.3113 0.6581 4.7857 11 1 0.2194 2.4679 3.5972 12 6 2.3355 2.0460 -1.2664 13 6 3.8034 1.7976 -1.6191 14 6 4.3590 0.4327 -1.2074 15 6 4.7554 2.9941 -1.5645 16 6 4.3324 2.4133 -2.9160 17 17 5.5636 1.4758 -3.8411 18 17 3.1784 3.3769 -3.9113 19 1 -0.3634 0.5137 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3635 0.5138 0.8899 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 3.7371 0.1041 1.5707 25 1 1.6993 1.6460 -2.0560 26 1 2.1619 3.1176 -1.1677 27 1 4.1374 -0.2991 -1.9842 28 1 5.4384 0.5052 -1.0739 29 1 3.8972 0.1198 -0.2710 30 1 4.3358 3.9583 -1.2777 31 1 5.7778 2.8091 -1.2352 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827635666.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:21:57 Heat of formation + Delta-G solvation = 28.970721 kcal Electronic energy + Delta-G solvation = -15220.261450 eV Core-core repulsion = 12590.106353 eV Total energy + Delta-G solvation = -2630.155097 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 251.054 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.47749 -36.17161 -35.73382 -34.92907 -31.45704 -29.65461 -28.01019 -25.65405 -23.53508 -22.00112 -20.56391 -18.66530 -17.38129 -15.78821 -14.91525 -14.37240 -14.18166 -13.61063 -13.35784 -13.00131 -12.48439 -12.39072 -12.18212 -11.54801 -11.25977 -11.20280 -11.03173 -10.93464 -10.79991 -10.73934 -10.56505 -10.50655 -10.07226 -10.02014 -9.61910 -9.54336 -9.23091 -8.28093 -6.99465 -6.21147 -3.22402 1.44346 2.53483 3.47710 3.54431 3.62278 3.69711 4.47479 4.64781 4.81614 5.08946 5.39707 5.59121 5.63682 5.90092 6.09417 6.10921 6.18792 6.34429 6.40962 6.47542 6.58275 6.63107 6.68504 6.93173 7.09240 7.28927 8.02539 8.50424 9.02275 9.77142 10.21034 11.01713 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.030366 B = 0.007064 C = 0.006867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.860941 B = 3963.049202 C = 4076.567588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.128 3.872 3 N -0.580 5.580 4 C -0.366 4.366 5 H 0.056 0.944 6 C -0.008 4.008 7 N -0.882 5.882 8 Si 1.039 2.961 9 H -0.295 1.295 10 H -0.286 1.286 11 H -0.292 1.292 12 C 0.179 3.821 13 C -0.080 4.080 14 C -0.119 4.119 15 C -0.134 4.134 16 C -0.005 4.005 17 Cl -0.118 7.118 18 Cl -0.113 7.113 19 H 0.036 0.964 20 H 0.036 0.964 21 H 0.054 0.946 22 H 0.031 0.969 23 H 0.076 0.924 24 H 0.271 0.729 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.099 0.901 30 H 0.113 0.887 31 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.465 2.013 -9.067 9.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.002 3.998 3 N -0.300 5.300 4 C -0.494 4.494 5 H 0.074 0.926 6 C -0.213 4.213 7 N -0.520 5.520 8 Si 0.869 3.131 9 H -0.223 1.223 10 H -0.212 1.212 11 H -0.218 1.218 12 C 0.051 3.949 13 C -0.085 4.085 14 C -0.176 4.176 15 C -0.171 4.171 16 C -0.057 4.057 17 Cl -0.091 7.091 18 Cl -0.086 7.086 19 H 0.055 0.945 20 H 0.055 0.945 21 H 0.073 0.927 22 H 0.049 0.951 23 H 0.094 0.906 24 H 0.082 0.918 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.118 0.882 30 H 0.131 0.869 31 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.206 1.597 -7.610 7.869 hybrid contribution 0.460 0.647 -1.914 2.073 sum 1.666 2.244 -9.524 9.926 Atomic orbital electron populations 1.22176 0.99650 0.98984 1.01086 1.21011 0.91957 0.86321 1.00503 1.44082 1.72673 1.11968 1.01277 1.19714 1.51771 0.92234 0.85632 0.92601 1.25520 0.97417 0.98002 1.00343 1.70833 1.18364 1.32334 1.30466 0.83964 0.76876 0.75835 0.76467 1.22289 1.21204 1.21821 1.20666 0.87676 0.97496 0.89071 1.23744 1.00472 0.95471 0.88803 1.21518 0.99832 0.92895 1.03364 1.24028 1.01718 1.00169 0.91220 1.27467 0.92820 1.01468 0.83895 1.98703 1.57625 1.75018 1.77753 1.98708 1.62406 1.73318 1.74163 0.94450 0.94500 0.92651 0.95067 0.90636 0.91774 0.93145 0.92567 0.92782 0.93208 0.88212 0.86867 0.87275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 10.22 37.16 0.38 -2.75 16 2 C 0.13 2.76 4.35 -4.04 -0.02 2.75 16 3 N -0.58 -13.14 1.57 -173.23 -0.27 -13.41 16 4 C -0.37 -9.38 9.30 -15.06 -0.14 -9.52 16 5 H 0.06 1.49 8.06 -52.49 -0.42 1.06 16 6 C -0.01 -0.20 4.52 -17.43 -0.08 -0.28 16 7 N -0.88 -24.22 12.10 55.49 0.67 -23.55 16 8 Si 1.04 24.02 30.06 -169.99 -5.11 18.91 16 9 H -0.30 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.18 3.50 4.86 -4.04 -0.02 3.49 16 13 C -0.08 -1.42 2.57 -154.50 -0.40 -1.82 16 14 C -0.12 -2.16 7.97 37.16 0.30 -1.87 16 15 C -0.13 -2.15 9.51 -26.70 -0.25 -2.40 16 16 C 0.00 -0.07 3.61 -26.70 -0.10 -0.17 16 17 Cl -0.12 -1.76 28.32 -51.86 -1.47 -3.23 16 18 Cl -0.11 -1.71 28.32 -51.86 -1.47 -3.18 16 19 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 20 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 22 H 0.03 0.62 7.30 -51.93 -0.38 0.24 16 23 H 0.08 1.85 5.44 -51.92 -0.28 1.56 16 24 H 0.27 7.32 5.99 -40.82 -0.24 7.08 16 25 H 0.05 0.95 8.07 -51.93 -0.42 0.53 16 26 H 0.06 1.12 7.79 -51.93 -0.40 0.72 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.86 7.90 -51.93 -0.41 0.45 16 29 H 0.10 2.11 3.56 -51.93 -0.18 1.93 16 30 H 0.11 1.78 8.05 -51.93 -0.42 1.36 16 31 H 0.11 1.66 8.05 -51.93 -0.42 1.24 16 LS Contribution 281.37 15.07 4.24 4.24 Total: -1.00 -25.91 281.37 -7.80 -33.72 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -4.07 Total: -0.93 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -0.33 Total: -12.57 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.40 Total: -36.96 kcal Atomic # 14 Polarization: 24.02 SS G_CDS: -5.11 Total: 18.91 kcal Atomic # 17 Polarization: -3.47 SS G_CDS: -2.94 Total: -6.40 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -25.91 -7.80 -33.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827635666.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.686 kcal (2) G-P(sol) polarization free energy of solvation -25.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds