Wall clock time and date at job start Sun Mar 29 2020 23:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46957 * 2 1 4 4 C 1.36937 * 120.00029 * 86.49462 * 3 2 1 5 5 H 1.08000 * 119.99944 * 205.26675 * 4 3 2 6 6 C 1.38810 * 119.99942 * 25.27531 * 4 3 2 7 7 N 1.31616 * 120.00236 * 41.99138 * 6 4 3 8 8 Si 1.86802 * 119.99705 * 221.99643 * 6 4 3 9 9 H 1.48500 * 109.47116 * 269.99908 * 8 6 4 10 10 H 1.48499 * 109.47458 * 149.99652 * 8 6 4 11 11 H 1.48500 * 109.47190 * 29.99657 * 8 6 4 12 12 C 1.46502 * 119.99701 * 266.49881 * 3 2 1 13 13 C 1.52998 * 109.46976 * 269.99799 * 12 3 2 14 14 C 1.53006 * 115.54764 * 34.33060 * 13 12 3 15 15 C 1.53003 * 117.49984 * 248.62567 * 13 12 3 16 16 C 1.52999 * 117.50162 * 179.97438 * 13 12 3 17 17 Cl 1.80298 * 117.50030 * 214.97830 * 16 13 12 18 18 Cl 1.80301 * 117.49615 * 0.02562 * 16 13 12 19 19 H 1.09001 * 109.47249 * 60.00679 * 1 2 3 20 20 H 1.09001 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.47888 * 300.00200 * 1 2 3 22 22 H 1.08997 * 109.47376 * 239.99890 * 2 1 3 23 23 H 1.09008 * 109.46917 * 119.99412 * 2 1 3 24 24 H 0.96996 * 120.00566 * 6.38878 * 7 6 4 25 25 H 1.09003 * 109.46938 * 29.99530 * 12 3 2 26 26 H 1.08999 * 109.47125 * 150.00182 * 12 3 2 27 27 H 1.08997 * 109.47234 * 85.58506 * 14 13 12 28 28 H 1.09003 * 109.46740 * 205.57974 * 14 13 12 29 29 H 1.08996 * 109.47167 * 325.57853 * 14 13 12 30 30 H 1.08996 * 117.49547 * 359.97438 * 15 13 12 31 31 H 1.08998 * 117.50058 * 145.02240 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1781 2.0510 1.1837 5 1 2.1340 3.1299 1.2039 6 6 2.3971 1.3432 2.3575 7 7 3.2161 0.3129 2.3617 8 14 1.5291 1.8528 3.9312 9 1 2.3665 2.8379 4.6616 10 1 1.3113 0.6581 4.7857 11 1 0.2194 2.4679 3.5972 12 6 2.3355 2.0460 -1.2664 13 6 3.8034 1.7976 -1.6191 14 6 4.3590 0.4327 -1.2074 15 6 4.7554 2.9941 -1.5645 16 6 4.3324 2.4133 -2.9160 17 17 5.5636 1.4758 -3.8411 18 17 3.1784 3.3769 -3.9113 19 1 -0.3634 0.5137 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3635 0.5138 0.8899 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 3.7371 0.1041 1.5707 25 1 1.6993 1.6460 -2.0560 26 1 2.1619 3.1176 -1.1677 27 1 4.1374 -0.2991 -1.9842 28 1 5.4384 0.5052 -1.0739 29 1 3.8972 0.1198 -0.2710 30 1 4.3358 3.9583 -1.2777 31 1 5.7778 2.8091 -1.2352 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827635666.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:21:56 Heat of formation + Delta-G solvation = 18.007799 kcal Electronic energy + Delta-G solvation = -15220.736838 eV Core-core repulsion = 12590.106353 eV Total energy + Delta-G solvation = -2630.630485 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 251.054 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.91408 -37.71547 -36.98527 -36.36877 -33.34863 -31.29287 -29.47492 -27.38162 -25.30875 -23.31049 -22.29074 -20.15758 -19.21835 -17.18862 -16.39469 -16.09068 -15.88137 -15.44814 -14.84462 -14.45996 -13.94907 -13.88017 -13.72566 -13.09552 -12.77663 -12.65466 -12.54941 -12.43932 -12.36659 -12.26904 -12.13719 -11.89765 -11.86239 -11.74755 -11.40477 -10.91798 -10.58838 -10.21540 -8.86303 -8.20316 -5.19952 0.16861 1.26373 1.62294 1.68124 1.86664 2.26736 2.70304 3.14017 3.21391 3.44525 3.74629 4.13072 4.16704 4.44392 4.62083 4.67697 4.71711 4.78511 4.89298 4.92432 5.05208 5.07893 5.09225 5.39996 5.41306 5.60051 6.03300 6.51442 7.14125 7.87686 8.31157 9.00933 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.030366 B = 0.007064 C = 0.006867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.860941 B = 3963.049202 C = 4076.567588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.130 3.870 3 N -0.590 5.590 4 C -0.362 4.362 5 H 0.042 0.958 6 C -0.048 4.048 7 N -0.907 5.907 8 Si 1.079 2.921 9 H -0.289 1.289 10 H -0.292 1.292 11 H -0.284 1.284 12 C 0.183 3.817 13 C -0.097 4.097 14 C -0.110 4.110 15 C -0.131 4.131 16 C 0.009 3.991 17 Cl -0.105 7.105 18 Cl -0.104 7.104 19 H 0.048 0.952 20 H 0.059 0.941 21 H 0.034 0.966 22 H 0.045 0.955 23 H 0.047 0.953 24 H 0.264 0.736 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.117 0.883 31 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.358 2.387 -10.122 10.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.004 3.996 3 N -0.311 5.311 4 C -0.491 4.491 5 H 0.060 0.940 6 C -0.249 4.249 7 N -0.547 5.547 8 Si 0.907 3.093 9 H -0.216 1.216 10 H -0.218 1.218 11 H -0.210 1.210 12 C 0.056 3.944 13 C -0.102 4.102 14 C -0.168 4.168 15 C -0.169 4.169 16 C -0.043 4.043 17 Cl -0.078 7.078 18 Cl -0.077 7.077 19 H 0.067 0.933 20 H 0.078 0.922 21 H 0.053 0.947 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.135 0.865 31 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.096 1.985 -8.692 8.983 hybrid contribution 0.500 0.537 -1.703 1.854 sum 1.596 2.522 -10.395 10.814 Atomic orbital electron populations 1.22076 0.98046 1.00398 1.00562 1.20965 0.93128 0.85712 0.99763 1.44134 1.73258 1.12234 1.01427 1.19733 1.50604 0.91745 0.86988 0.94017 1.26359 0.97804 0.98249 1.02525 1.70888 1.19733 1.33654 1.30458 0.83381 0.76411 0.75384 0.74156 1.21606 1.21839 1.21033 1.20596 0.89076 0.96792 0.87946 1.23434 0.99547 0.96004 0.91172 1.21374 0.99876 0.93398 1.02116 1.24096 1.01816 0.99569 0.91398 1.27193 0.92621 1.00531 0.83924 1.98711 1.56956 1.74779 1.77333 1.98715 1.62161 1.72985 1.73797 0.93276 0.92175 0.94714 0.93625 0.93539 0.92441 0.92371 0.93159 0.91894 0.92624 0.91161 0.86518 0.86321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.75 10.22 71.98 0.74 -5.01 16 2 C 0.13 5.55 4.35 86.38 0.38 5.93 16 3 N -0.59 -26.50 1.57 -701.99 -1.10 -27.61 16 4 C -0.36 -18.58 9.30 84.03 0.78 -17.80 16 5 H 0.04 2.23 8.06 -2.91 -0.02 2.21 16 6 C -0.05 -2.54 4.52 84.86 0.38 -2.16 16 7 N -0.91 -50.49 12.10 21.65 0.26 -50.23 16 8 Si 1.08 48.78 30.06 68.60 2.06 50.84 16 9 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 10 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 C 0.18 6.96 4.86 86.38 0.42 7.38 16 13 C -0.10 -3.31 2.57 -52.18 -0.13 -3.45 16 14 C -0.11 -3.91 7.97 71.98 0.57 -3.33 16 15 C -0.13 -3.99 9.51 30.61 0.29 -3.70 16 16 C 0.01 0.27 3.61 30.61 0.11 0.38 16 17 Cl -0.10 -2.88 28.32 -2.72 -0.08 -2.96 16 18 Cl -0.10 -2.91 28.32 -2.72 -0.08 -2.98 16 19 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 20 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 21 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.05 1.78 7.30 -2.39 -0.02 1.76 16 23 H 0.05 2.30 5.44 -2.38 -0.01 2.29 16 24 H 0.26 14.61 5.99 -92.71 -0.56 14.06 16 25 H 0.06 2.10 8.07 -2.39 -0.02 2.08 16 26 H 0.05 1.96 7.79 -2.39 -0.02 1.94 16 27 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.05 1.86 7.90 -2.39 -0.02 1.84 16 29 H 0.07 2.98 3.56 -2.39 -0.01 2.97 16 30 H 0.12 3.48 8.05 -2.39 -0.02 3.46 16 31 H 0.12 3.39 8.05 -2.39 -0.02 3.37 16 Total: -1.00 -53.86 281.37 5.93 -47.93 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 1.33 Total: 6.77 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: 3.54 Total: -21.76 kcal Atomic # 7 Polarization: -76.99 SS G_CDS: -0.84 Total: -77.83 kcal Atomic # 14 Polarization: 48.78 SS G_CDS: 2.06 Total: 50.84 kcal Atomic # 17 Polarization: -5.79 SS G_CDS: -0.15 Total: -5.94 kcal Total: -53.86 5.93 -47.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827635666.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.937 kcal (2) G-P(sol) polarization free energy of solvation -53.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds