Wall clock time and date at job start Sun Mar 29 2020 23:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 110.99842 * 2 1 4 4 C 1.50700 * 109.47191 * 66.04419 * 3 2 1 5 5 H 1.08002 * 119.99770 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00083 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00147 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00278 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47228 * 179.97438 * 8 6 4 10 10 H 1.48501 * 109.46793 * 300.00001 * 8 6 4 11 11 H 1.48500 * 109.47000 * 60.00094 * 8 6 4 12 12 C 1.46899 * 111.00141 * 236.04457 * 2 1 3 13 13 C 1.53000 * 109.46953 * 293.95589 * 12 2 1 14 14 C 1.53002 * 115.54872 * 325.66715 * 13 12 2 15 15 C 1.52995 * 117.49990 * 111.37664 * 13 12 2 16 16 C 1.52998 * 117.49523 * 180.02562 * 13 12 2 17 17 Cl 1.80298 * 117.50084 * 359.97438 * 16 13 12 18 18 Cl 1.80306 * 117.49816 * 145.00060 * 16 13 12 19 19 H 1.08999 * 109.47291 * 60.00141 * 1 2 3 20 20 H 1.09003 * 109.47182 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.47452 * 300.00390 * 1 2 3 22 22 H 1.08994 * 109.47225 * 306.04646 * 3 2 1 23 23 H 1.08998 * 109.47151 * 186.04471 * 3 2 1 24 24 H 0.97005 * 119.99661 * 359.97438 * 7 6 4 25 25 H 1.08996 * 109.46650 * 53.95370 * 12 2 1 26 26 H 1.08996 * 109.47059 * 173.95504 * 12 2 1 27 27 H 1.08996 * 109.47203 * 34.42763 * 14 13 12 28 28 H 1.09004 * 109.46977 * 154.41801 * 14 13 12 29 29 H 1.08995 * 109.47360 * 274.41620 * 14 13 12 30 30 H 1.09003 * 117.50290 * 214.97688 * 15 13 12 31 31 H 1.08999 * 117.50142 * 0.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0745 1.5113 2.0488 6 6 2.0275 3.3492 1.5289 7 7 2.7127 4.0016 0.6154 8 14 1.5837 4.1866 3.1386 9 1 2.1168 5.5725 3.1390 10 1 0.1065 4.2238 3.2863 11 1 2.1755 3.4288 4.2704 12 6 1.9955 -0.7660 -1.1375 13 6 1.6314 -2.2426 -0.9703 14 6 1.6095 -2.7577 0.4703 15 6 0.6148 -2.8348 -1.9483 16 6 2.0939 -3.2120 -2.0599 17 17 3.0256 -2.5267 -3.4431 18 17 2.5705 -4.8739 -1.5480 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 1.5611 1.9274 -0.8309 23 1 3.0797 1.3445 -0.1082 24 1 2.9435 3.5666 -0.2204 25 1 1.5611 -0.3872 -2.0627 26 1 3.0797 -0.6611 -1.1755 27 1 1.2605 -1.9665 1.1338 28 1 0.9373 -3.6130 0.5401 29 1 2.6146 -3.0607 0.7632 30 1 -0.0701 -3.5915 -1.5657 31 1 0.2056 -2.1726 -2.7113 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828015689.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:14 Heat of formation + Delta-G solvation = -6.410779 kcal Electronic energy + Delta-G solvation = -14696.975321 eV Core-core repulsion = 12065.285967 eV Total energy + Delta-G solvation = -2631.689354 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 251.054 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.22769 -37.88026 -37.05020 -36.48984 -34.69467 -29.82746 -28.73853 -28.50699 -25.59182 -23.37650 -22.78875 -20.11551 -18.87725 -17.33040 -16.81945 -16.38412 -15.70636 -15.59283 -14.89344 -14.63265 -14.18883 -13.97209 -13.71073 -13.25852 -13.02793 -12.93410 -12.65206 -12.53694 -12.46079 -12.36533 -12.20399 -12.16015 -11.90421 -11.86078 -11.04338 -10.84641 -10.60759 -10.54788 -9.14455 -8.65710 -6.36530 0.13894 1.16509 1.56072 1.64465 1.83469 2.13170 2.58176 2.93693 3.17058 3.26012 3.44403 3.80311 4.04509 4.40383 4.44801 4.56137 4.61323 4.66146 4.82015 4.88573 4.95600 4.98344 5.04116 5.15775 5.48849 5.77699 5.98104 6.35819 6.42252 6.62282 7.44195 8.73139 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.039243 B = 0.005197 C = 0.004916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.339268 B = 5386.392081 C = 5694.593151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.529 5.529 3 C 0.193 3.807 4 C -0.595 4.595 5 H 0.060 0.940 6 C -0.038 4.038 7 N -0.940 5.940 8 Si 1.121 2.879 9 H -0.287 1.287 10 H -0.267 1.267 11 H -0.270 1.270 12 C 0.091 3.909 13 C -0.080 4.080 14 C -0.110 4.110 15 C -0.121 4.121 16 C 0.001 3.999 17 Cl -0.111 7.111 18 Cl -0.093 7.093 19 H 0.008 0.992 20 H 0.089 0.911 21 H 0.057 0.943 22 H -0.043 1.043 23 H -0.004 1.004 24 H 0.252 0.748 25 H 0.033 0.967 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.146 0.854 31 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.009 -16.754 -4.519 18.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.253 5.253 3 C 0.067 3.933 4 C -0.633 4.633 5 H 0.078 0.922 6 C -0.235 4.235 7 N -0.578 5.578 8 Si 0.942 3.058 9 H -0.213 1.213 10 H -0.192 1.192 11 H -0.195 1.195 12 C -0.037 4.037 13 C -0.082 4.082 14 C -0.167 4.167 15 C -0.159 4.159 16 C -0.051 4.051 17 Cl -0.084 7.084 18 Cl -0.066 7.066 19 H 0.026 0.974 20 H 0.107 0.893 21 H 0.076 0.924 22 H -0.025 1.025 23 H 0.014 0.986 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.164 0.836 31 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.591 -15.666 -3.328 16.660 hybrid contribution 0.265 -0.845 -2.197 2.369 sum -4.326 -16.511 -5.524 17.940 Atomic orbital electron populations 1.22272 0.86924 1.01650 0.99907 1.61908 1.08597 1.14086 1.40702 1.19543 0.93230 0.85151 0.95387 1.22269 1.38251 0.99983 1.02804 0.92211 1.27402 0.93657 0.95991 1.06500 1.70935 1.38477 1.40326 1.08069 0.82879 0.77073 0.74981 0.70860 1.21253 1.19231 1.19515 1.21557 0.99512 0.90687 0.91994 1.22277 0.99850 0.92213 0.93880 1.21367 1.02566 1.01415 0.91351 1.24400 0.88452 1.02493 1.00513 1.27166 0.97888 0.86220 0.93811 1.98743 1.77141 1.84693 1.47829 1.98729 1.93415 1.23792 1.90674 0.97371 0.89281 0.92420 1.02521 0.98608 0.93872 0.94869 0.92097 0.90251 0.90286 0.92341 0.83623 0.85802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.43 8.63 127.69 1.10 2.53 16 2 N -0.53 -21.58 3.51 -927.05 -3.25 -24.83 16 3 C 0.19 10.08 4.03 85.56 0.34 10.42 16 4 C -0.59 -33.31 8.51 25.60 0.22 -33.09 16 5 H 0.06 3.27 7.10 -2.91 -0.02 3.25 16 6 C -0.04 -2.20 5.46 84.65 0.46 -1.74 16 7 N -0.94 -58.15 13.65 21.45 0.29 -57.86 16 8 Si 1.12 49.71 29.90 68.60 2.05 51.76 16 9 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 10 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 11 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 12 C 0.09 3.09 4.14 86.30 0.36 3.45 16 13 C -0.08 -2.06 1.55 -52.18 -0.08 -2.14 16 14 C -0.11 -2.73 8.31 71.98 0.60 -2.13 16 15 C -0.12 -2.33 9.36 30.61 0.29 -2.04 16 16 C 0.00 0.02 3.61 30.61 0.11 0.13 16 17 Cl -0.11 -2.86 28.32 -2.72 -0.08 -2.94 16 18 Cl -0.09 -2.04 28.32 -2.72 -0.08 -2.11 16 19 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 20 H 0.09 2.44 6.41 -2.39 -0.02 2.43 16 21 H 0.06 2.24 6.86 -2.38 -0.02 2.23 16 22 H -0.04 -2.39 7.99 -2.39 -0.02 -2.41 16 23 H 0.00 -0.23 7.80 -2.39 -0.02 -0.25 16 24 H 0.25 15.86 7.22 -92.70 -0.67 15.19 16 25 H 0.03 1.12 7.88 -2.39 -0.02 1.10 16 26 H 0.06 2.28 7.93 -2.39 -0.02 2.26 16 27 H 0.08 2.32 6.07 -2.39 -0.01 2.31 16 28 H 0.08 1.53 7.90 -2.39 -0.02 1.51 16 29 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.15 2.05 8.05 -2.39 -0.02 2.03 16 31 H 0.12 2.25 8.05 -2.39 -0.02 2.24 16 Total: -1.00 -63.24 284.19 3.55 -59.69 By element: Atomic # 1 Polarization: -0.32 SS G_CDS: 1.21 Total: 0.89 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: 3.40 Total: -24.61 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -2.96 Total: -82.69 kcal Atomic # 14 Polarization: 49.71 SS G_CDS: 2.05 Total: 51.76 kcal Atomic # 17 Polarization: -4.90 SS G_CDS: -0.15 Total: -5.05 kcal Total: -63.24 3.55 -59.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828015689.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.281 kcal (2) G-P(sol) polarization free energy of solvation -63.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds