Wall clock time and date at job start Sun Mar 29 2020 23:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47326 * 2 1 4 4 H 1.08995 * 109.46984 * 305.90151 * 3 2 1 5 5 C 1.50696 * 109.46947 * 185.90011 * 3 2 1 6 6 H 1.08002 * 119.99955 * 243.26048 * 5 3 2 7 7 C 1.37873 * 120.00050 * 63.26039 * 5 3 2 8 8 N 1.31516 * 119.99795 * 195.96026 * 7 5 3 9 9 Si 1.86795 * 120.00251 * 15.95796 * 7 5 3 10 10 H 1.48502 * 109.46999 * 93.36142 * 9 7 5 11 11 H 1.48498 * 109.47254 * 213.36571 * 9 7 5 12 12 H 1.48503 * 109.47004 * 333.36492 * 9 7 5 13 13 N 1.46899 * 109.46848 * 65.90243 * 3 2 1 14 14 C 1.46907 * 111.00138 * 258.84807 * 13 3 2 15 15 C 1.52994 * 109.47511 * 175.56318 * 14 13 3 16 16 H 1.09007 * 115.54589 * 29.42382 * 15 14 13 17 17 C 1.53000 * 117.50390 * 243.74856 * 15 14 13 18 18 C 1.52999 * 117.50137 * 175.08724 * 15 14 13 19 19 Cl 1.80298 * 117.50285 * 215.01071 * 18 15 14 20 20 Cl 1.80306 * 117.49526 * 0.02562 * 18 15 14 21 21 H 1.09006 * 109.47101 * 295.92119 * 1 2 3 22 22 H 1.09000 * 109.47113 * 55.91360 * 1 2 3 23 23 H 1.08995 * 109.47392 * 175.91235 * 1 2 3 24 24 H 1.08999 * 109.46674 * 239.99828 * 2 1 3 25 25 H 1.09006 * 109.46551 * 119.99987 * 2 1 3 26 26 H 0.97004 * 119.99883 * 180.02562 * 8 7 5 27 27 H 1.00899 * 111.00686 * 22.80529 * 13 3 2 28 28 H 1.09010 * 109.46726 * 55.56787 * 14 13 3 29 29 H 1.08997 * 109.46983 * 295.57357 * 14 13 3 30 30 H 1.09002 * 117.49722 * 359.97438 * 17 15 14 31 31 H 1.09001 * 117.49669 * 144.99570 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5931 1.9859 -0.8324 5 6 3.5399 1.4449 -0.1460 6 1 4.1591 1.8377 0.6469 7 6 4.1218 0.9456 -1.2919 8 7 5.4042 0.6541 -1.3049 9 14 3.0888 0.6831 -2.8260 10 1 3.1727 1.8871 -3.6912 11 1 3.5976 -0.4973 -3.5694 12 1 1.6746 0.4510 -2.4367 13 7 1.6702 2.0926 1.2643 14 6 0.4969 2.9588 1.0873 15 6 0.0755 3.5300 2.4427 16 1 0.8790 3.6624 3.1673 17 6 -1.3015 3.1338 2.9791 18 6 -1.0628 4.5522 2.4555 19 17 -0.9727 5.8836 3.6679 20 17 -1.8055 4.9909 0.8721 21 1 -0.3633 0.4493 0.9243 22 1 -0.3633 0.5759 -0.8511 23 1 -0.3634 -1.0250 -0.0733 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8901 26 1 5.8137 0.3032 -2.1112 27 1 1.5090 1.4091 1.9888 28 1 -0.3238 2.3774 0.6671 29 1 0.7473 3.7758 0.4106 30 1 -1.9074 2.4665 2.3662 31 1 -1.4040 3.0054 4.0567 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846993204.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:07 Heat of formation + Delta-G solvation = -8.832128 kcal Electronic energy + Delta-G solvation = -14589.305899 eV Core-core repulsion = 11957.511548 eV Total energy + Delta-G solvation = -2631.794351 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 251.054 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.55163 -38.02163 -37.00055 -36.38899 -34.32834 -32.54705 -29.57833 -26.40605 -24.07711 -23.18784 -22.07092 -21.30667 -18.83664 -17.67128 -16.85936 -16.25732 -15.92955 -15.62344 -14.78655 -14.59220 -14.08134 -13.99495 -13.55910 -13.40056 -13.31892 -12.83655 -12.64288 -12.56771 -12.35162 -12.23957 -12.06896 -11.90046 -11.66081 -11.39893 -11.28345 -11.18419 -10.70886 -10.50136 -8.94243 -8.25105 -6.20685 0.19832 1.20804 1.33862 1.39065 1.46690 2.24054 2.37714 3.03837 3.09525 3.37756 3.80045 4.06680 4.26722 4.35269 4.43581 4.50916 4.64557 4.72542 4.75279 4.91752 5.03275 5.12532 5.21001 5.28873 5.55163 5.76991 6.07385 6.71916 6.85537 6.86209 7.42104 8.92438 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.032116 B = 0.005551 C = 0.005433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.642219 B = 5042.936999 C = 5152.858221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.148 4.148 3 C 0.200 3.800 4 H 0.020 0.980 5 C -0.506 4.506 6 H 0.033 0.967 7 C 0.014 3.986 8 N -0.946 5.946 9 Si 0.923 3.077 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.224 1.224 13 N -0.681 5.681 14 C 0.088 3.912 15 C -0.115 4.115 16 H 0.134 0.866 17 C -0.118 4.118 18 C -0.005 4.005 19 Cl -0.103 7.103 20 Cl -0.106 7.106 21 H 0.067 0.933 22 H 0.045 0.955 23 H 0.063 0.937 24 H 0.043 0.957 25 H 0.057 0.943 26 H 0.263 0.737 27 H 0.340 0.660 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.132 0.868 31 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.510 4.138 7.815 20.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.188 4.188 3 C 0.090 3.910 4 H 0.037 0.963 5 C -0.544 4.544 6 H 0.051 0.949 7 C -0.183 4.183 8 N -0.586 5.586 9 Si 0.747 3.253 10 H -0.210 1.210 11 H -0.214 1.214 12 H -0.147 1.147 13 N -0.312 5.312 14 C -0.041 4.041 15 C -0.134 4.134 16 H 0.152 0.848 17 C -0.155 4.155 18 C -0.057 4.057 19 Cl -0.076 7.076 20 Cl -0.079 7.079 21 H 0.086 0.914 22 H 0.064 0.936 23 H 0.082 0.918 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.158 0.842 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.150 0.850 31 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.985 4.739 7.608 20.095 hybrid contribution -0.245 -0.376 -1.064 1.154 sum -18.230 4.363 6.544 19.854 Atomic orbital electron populations 1.21882 0.94890 1.02010 1.01652 1.22459 0.95917 0.99198 1.01191 1.19321 0.93279 0.90054 0.88321 0.96250 1.21311 0.91947 1.38743 1.02414 0.94902 1.25730 0.95827 0.94780 1.01950 1.70129 1.13815 1.45513 1.29188 0.86247 0.81939 0.77408 0.79676 1.20979 1.21413 1.14670 1.60382 1.35943 1.26094 1.08801 1.21652 0.92148 0.96458 0.93884 1.23247 0.93391 0.96462 1.00308 0.84821 1.24280 0.96809 0.89643 1.04805 1.26940 1.07586 0.86705 0.84476 1.98741 1.98417 1.53605 1.56839 1.98745 1.83968 1.94241 1.30969 0.91421 0.93579 0.91783 0.93870 0.92425 0.92822 0.84153 0.93284 0.92323 0.85011 0.83963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.18 8.74 71.98 0.63 -3.55 16 2 C -0.15 -5.68 4.49 30.59 0.14 -5.54 16 3 C 0.20 8.73 1.73 44.17 0.08 8.81 16 4 H 0.02 0.88 6.36 -2.39 -0.02 0.86 16 5 C -0.51 -28.52 9.29 25.60 0.24 -28.29 16 6 H 0.03 2.11 8.06 -2.91 -0.02 2.08 16 7 C 0.01 0.82 5.31 84.65 0.45 1.27 16 8 N -0.95 -59.18 13.96 21.45 0.30 -58.88 16 9 Si 0.92 43.14 25.75 68.60 1.77 44.90 16 10 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 11 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 12 H -0.22 -9.27 5.48 99.48 0.55 -8.72 16 13 N -0.68 -24.90 6.10 -495.45 -3.02 -27.93 16 14 C 0.09 2.56 4.43 86.30 0.38 2.94 16 15 C -0.11 -2.57 5.74 -10.80 -0.06 -2.64 16 16 H 0.13 3.12 8.14 -2.38 -0.02 3.10 16 17 C -0.12 -1.86 9.86 30.62 0.30 -1.55 16 18 C -0.01 -0.11 3.62 30.62 0.11 0.00 16 19 Cl -0.10 -2.20 29.29 -2.72 -0.08 -2.28 16 20 Cl -0.11 -2.47 28.23 -2.72 -0.08 -2.55 16 21 H 0.07 1.62 6.50 -2.38 -0.02 1.60 16 22 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.04 1.80 4.86 -2.39 -0.01 1.78 16 25 H 0.06 2.19 8.01 -2.38 -0.02 2.17 16 26 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 27 H 0.34 11.05 7.97 -89.69 -0.71 10.33 16 28 H 0.05 1.30 5.71 -2.38 -0.01 1.29 16 29 H 0.06 1.97 8.02 -2.39 -0.02 1.95 16 30 H 0.13 1.77 8.03 -2.39 -0.02 1.75 16 31 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -64.56 280.65 1.41 -63.15 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.26 Total: 12.12 kcal Atomic # 6 Polarization: -30.81 SS G_CDS: 2.26 Total: -28.55 kcal Atomic # 7 Polarization: -84.08 SS G_CDS: -2.72 Total: -86.80 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.77 Total: 44.90 kcal Atomic # 17 Polarization: -4.67 SS G_CDS: -0.16 Total: -4.82 kcal Total: -64.56 1.41 -63.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846993204.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.319 kcal (2) G-P(sol) polarization free energy of solvation -64.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds