Wall clock time and date at job start Sun Mar 29 2020 23:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47069 * 100.80509 * 3 2 1 5 5 C 1.36774 * 120.00010 * 97.52663 * 4 3 2 6 6 H 1.08007 * 119.99720 * 158.20665 * 5 4 3 7 7 C 1.39088 * 120.00183 * 338.47966 * 5 4 3 8 8 N 1.31338 * 119.99874 * 354.40677 * 7 5 4 9 9 Si 1.86797 * 120.00275 * 174.40706 * 7 5 4 10 10 H 1.48497 * 109.47244 * 89.99820 * 9 7 5 11 11 H 1.48497 * 109.47288 * 210.00291 * 9 7 5 12 12 H 1.48508 * 109.46902 * 330.00150 * 9 7 5 13 13 C 1.34784 * 119.99827 * 277.52257 * 4 3 2 14 14 O 1.21658 * 119.99521 * 177.61739 * 13 4 3 15 15 C 1.47134 * 119.99790 * 357.62615 * 13 4 3 16 16 N 1.30846 * 126.19607 * 7.79094 * 15 13 4 17 17 N 1.26256 * 116.22677 * 179.97438 * 16 15 13 18 18 C 1.29850 * 117.79791 * 359.97438 * 17 16 15 19 19 C 1.50702 * 125.53693 * 179.97438 * 18 17 16 20 20 S 1.71278 * 108.92471 * 359.77421 * 18 17 16 21 21 H 4.40639 * 5.51360 * 179.97438 * 4 1 2 22 22 H 1.09007 * 109.47726 * 340.80660 * 3 2 1 23 23 H 1.09000 * 109.47104 * 220.80457 * 3 2 1 24 24 H 0.96995 * 120.00097 * 179.97438 * 8 7 5 25 25 H 1.08997 * 109.46543 * 90.03238 * 19 18 17 26 26 H 1.09004 * 109.47019 * 210.02590 * 19 18 17 27 27 H 1.08993 * 109.47204 * 330.03234 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1341 0.2598 -1.3568 5 6 3.5078 1.5246 -1.7192 6 1 4.1772 1.6716 -2.5539 7 6 3.0303 2.6212 -1.0091 8 7 2.1362 2.4516 -0.0621 9 14 3.6607 4.3351 -1.4024 10 1 2.8022 4.9509 -2.4459 11 1 3.6237 5.1699 -0.1749 12 1 5.0574 4.2469 -1.8992 13 6 3.2151 -0.7482 -2.2478 14 8 3.5793 -0.5252 -3.3870 15 6 2.8629 -2.1182 -1.8428 16 7 2.3251 -2.4731 -0.7040 17 7 2.1000 -3.7063 -0.5536 18 6 2.4171 -4.5031 -1.5286 19 6 2.2265 -5.9980 -1.5355 20 16 3.0820 -3.5784 -2.8079 21 1 -1.0501 -0.0002 0.0001 22 1 3.0098 -0.9697 0.3379 23 1 3.0089 0.7787 0.6716 24 1 1.8035 3.2163 0.4333 25 1 1.2437 -6.2370 -1.9416 26 1 2.9969 -6.4596 -2.1532 27 1 2.3011 -6.3785 -0.5169 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847178434.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:14:34 Heat of formation + Delta-G solvation = 109.689594 kcal Electronic energy + Delta-G solvation = -15874.209464 eV Core-core repulsion = 13148.490812 eV Total energy + Delta-G solvation = -2725.718651 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.047 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.60682 -38.53055 -35.32759 -32.95083 -32.09227 -31.28964 -28.97213 -26.49676 -25.59015 -24.41155 -21.54495 -19.19258 -18.53766 -17.93239 -16.79475 -16.06993 -15.39379 -15.12771 -14.25257 -14.07674 -13.90218 -13.10462 -13.03885 -12.93143 -12.48631 -12.31987 -12.16982 -11.56846 -11.19133 -10.76808 -10.54414 -10.12784 -9.74824 -9.59300 -9.31369 -9.27155 -9.17788 -8.86321 -8.64925 -8.09309 -6.62552 -4.13561 0.54608 1.29380 1.82081 2.74178 3.06864 3.10851 3.15388 3.73070 3.92307 4.04205 4.28407 4.34570 4.77486 4.88186 5.10361 5.31068 5.39468 5.62566 5.68855 5.79339 5.95995 6.65424 6.88209 7.14734 7.21504 7.71789 8.11969 8.77802 8.92476 8.98322 9.01180 9.59989 10.30712 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.037222 B = 0.007198 C = 0.006281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.057285 B = 3889.273497 C = 4456.827781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.086 4.086 3 C 0.215 3.785 4 N -0.384 5.384 5 C -0.287 4.287 6 H 0.114 0.886 7 C 0.031 3.969 8 N -0.838 5.838 9 Si 0.942 3.058 10 H -0.273 1.273 11 H -0.278 1.278 12 H -0.264 1.264 13 C 0.486 3.514 14 O -0.583 6.583 15 C 0.001 3.999 16 N -0.240 5.240 17 N -0.268 5.268 18 C -0.042 4.042 19 C -0.065 4.065 20 S 0.156 5.844 21 H 0.197 0.803 22 H 0.089 0.911 23 H 0.122 0.878 24 H 0.279 0.721 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.680 -9.292 0.109 9.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 C -0.087 4.087 3 C 0.093 3.907 4 N -0.098 5.098 5 C -0.418 4.418 6 H 0.132 0.868 7 C -0.177 4.177 8 N -0.474 5.474 9 Si 0.767 3.233 10 H -0.198 1.198 11 H -0.203 1.203 12 H -0.188 1.188 13 C 0.273 3.727 14 O -0.469 6.469 15 C -0.275 4.275 16 N -0.082 5.082 17 N -0.109 5.109 18 C -0.320 4.320 19 C -0.126 4.126 20 S 0.399 5.601 21 H 0.214 0.786 22 H 0.106 0.894 23 H 0.140 0.860 24 H 0.090 0.910 25 H 0.103 0.897 26 H 0.098 0.902 27 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.659 -9.040 -0.015 9.064 hybrid contribution -0.325 0.876 0.024 0.934 sum 0.334 -8.164 0.009 8.171 Atomic orbital electron populations 1.24155 0.95303 1.07909 1.02092 1.22729 0.93841 0.93919 0.98229 1.18890 0.85034 1.01751 0.85048 1.43726 1.49737 1.07261 1.09118 1.20058 1.25306 0.80306 1.16151 0.86815 1.25667 0.95103 1.01113 0.95832 1.70014 1.24831 1.32523 1.20081 0.85672 0.79626 0.79779 0.78261 1.19799 1.20336 1.18833 1.16326 0.89114 0.81539 0.85684 1.90690 1.55390 1.82504 1.18286 1.30142 1.03347 1.00875 0.93172 1.72360 1.13364 1.06001 1.16507 1.71204 1.16901 0.97200 1.25557 1.29060 1.04799 1.03522 0.94647 1.20255 1.03115 0.84789 1.04432 1.84536 1.56974 0.98959 1.19612 0.78611 0.89399 0.86040 0.91034 0.89726 0.90195 0.89283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.28 19.25 29.55 0.57 -5.71 15 2 C -0.09 -2.09 10.45 -37.13 -0.39 -2.48 15 3 C 0.22 5.16 4.75 -6.83 -0.03 5.13 15 4 N -0.38 -9.97 2.60 -119.27 -0.31 -10.28 15 5 C -0.29 -7.58 9.32 -15.03 -0.14 -7.72 15 6 H 0.11 3.05 7.39 -52.48 -0.39 2.66 15 7 C 0.03 0.76 5.21 -17.45 -0.09 0.67 15 8 N -0.84 -20.92 8.92 55.50 0.50 -20.42 15 9 Si 0.94 19.19 29.56 -169.99 -5.02 14.16 15 10 H -0.27 -5.64 7.11 56.52 0.40 -5.24 15 11 H -0.28 -5.51 7.11 56.52 0.40 -5.10 15 12 H -0.26 -5.30 7.11 56.52 0.40 -4.90 15 13 C 0.49 12.54 7.53 -12.65 -0.10 12.44 15 14 O -0.58 -16.23 16.68 5.23 0.09 -16.14 15 15 C 0.00 0.03 7.21 -14.36 -0.10 -0.08 15 16 N -0.24 -5.25 7.35 32.91 0.24 -5.01 15 17 N -0.27 -5.24 11.59 32.65 0.38 -4.86 15 18 C -0.04 -0.66 7.53 -13.11 -0.10 -0.76 15 19 C -0.07 -0.66 10.48 36.01 0.38 -0.29 15 20 S 0.16 2.69 23.13 -107.50 -2.49 0.21 15 21 H 0.20 3.70 7.80 -54.09 -0.42 3.28 15 22 H 0.09 2.01 5.60 -51.92 -0.29 1.72 15 23 H 0.12 2.95 6.09 -51.93 -0.32 2.64 15 24 H 0.28 6.54 8.31 -40.82 -0.34 6.20 15 25 H 0.08 0.74 8.14 -51.93 -0.42 0.32 15 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 15 27 H 0.09 0.83 8.14 -51.93 -0.42 0.41 15 LS Contribution 262.49 15.07 3.96 3.96 Total: -1.00 -30.49 262.49 -4.49 -34.97 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -1.82 Total: 2.19 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: 0.00 Total: 1.22 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.80 Total: -40.57 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: 0.09 Total: -16.14 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.16 kcal Atomic # 16 Polarization: 2.69 SS G_CDS: -2.49 Total: 0.21 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.49 -4.49 -34.97 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847178434.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.664 kcal (2) G-P(sol) polarization free energy of solvation -30.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds