Wall clock time and date at job start Sun Mar 29 2020 23:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47069 * 100.80509 * 3 2 1 5 5 C 1.36774 * 120.00010 * 97.52663 * 4 3 2 6 6 H 1.08007 * 119.99720 * 158.20665 * 5 4 3 7 7 C 1.39088 * 120.00183 * 338.47966 * 5 4 3 8 8 N 1.31338 * 119.99874 * 354.40677 * 7 5 4 9 9 Si 1.86797 * 120.00275 * 174.40706 * 7 5 4 10 10 H 1.48497 * 109.47244 * 89.99820 * 9 7 5 11 11 H 1.48497 * 109.47288 * 210.00291 * 9 7 5 12 12 H 1.48508 * 109.46902 * 330.00150 * 9 7 5 13 13 C 1.34784 * 119.99827 * 277.52257 * 4 3 2 14 14 O 1.21658 * 119.99521 * 177.61739 * 13 4 3 15 15 C 1.47134 * 119.99790 * 357.62615 * 13 4 3 16 16 N 1.30846 * 126.19607 * 7.79094 * 15 13 4 17 17 N 1.26256 * 116.22677 * 179.97438 * 16 15 13 18 18 C 1.29850 * 117.79791 * 359.97438 * 17 16 15 19 19 C 1.50702 * 125.53693 * 179.97438 * 18 17 16 20 20 S 1.71278 * 108.92471 * 359.77421 * 18 17 16 21 21 H 4.40639 * 5.51360 * 179.97438 * 4 1 2 22 22 H 1.09007 * 109.47726 * 340.80660 * 3 2 1 23 23 H 1.09000 * 109.47104 * 220.80457 * 3 2 1 24 24 H 0.96995 * 120.00097 * 179.97438 * 8 7 5 25 25 H 1.08997 * 109.46543 * 90.03238 * 19 18 17 26 26 H 1.09004 * 109.47019 * 210.02590 * 19 18 17 27 27 H 1.08993 * 109.47204 * 330.03234 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1341 0.2598 -1.3568 5 6 3.5078 1.5246 -1.7192 6 1 4.1772 1.6716 -2.5539 7 6 3.0303 2.6212 -1.0091 8 7 2.1362 2.4516 -0.0621 9 14 3.6607 4.3351 -1.4024 10 1 2.8022 4.9509 -2.4459 11 1 3.6237 5.1699 -0.1749 12 1 5.0574 4.2469 -1.8992 13 6 3.2151 -0.7482 -2.2478 14 8 3.5793 -0.5252 -3.3870 15 6 2.8629 -2.1182 -1.8428 16 7 2.3251 -2.4731 -0.7040 17 7 2.1000 -3.7063 -0.5536 18 6 2.4171 -4.5031 -1.5286 19 6 2.2265 -5.9980 -1.5355 20 16 3.0820 -3.5784 -2.8079 21 1 -1.0501 -0.0002 0.0001 22 1 3.0098 -0.9697 0.3379 23 1 3.0089 0.7787 0.6716 24 1 1.8035 3.2163 0.4333 25 1 1.2437 -6.2370 -1.9416 26 1 2.9969 -6.4596 -2.1532 27 1 2.3011 -6.3785 -0.5169 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847178434.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:14:33 Heat of formation + Delta-G solvation = 89.361141 kcal Electronic energy + Delta-G solvation = -15875.090972 eV Core-core repulsion = 13148.490812 eV Total energy + Delta-G solvation = -2726.600159 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.047 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.19342 -40.40520 -37.26939 -34.50318 -33.69517 -33.14102 -30.41919 -28.33132 -27.19867 -26.04726 -23.21263 -20.83903 -20.11541 -19.75415 -18.59656 -17.77100 -17.02001 -16.93170 -15.99355 -15.79817 -15.39257 -14.75504 -14.54146 -14.32502 -13.96384 -13.79615 -13.39576 -13.33245 -12.88661 -12.64731 -12.13023 -11.68850 -11.41573 -11.26332 -11.12114 -10.80996 -10.77967 -10.69805 -10.46350 -9.97929 -8.44767 -6.12500 -0.94614 -0.20152 0.33671 1.15123 1.42178 1.45986 1.55906 1.94458 2.12014 2.27508 2.47256 2.74953 2.98569 3.31902 3.60956 3.88359 3.98945 4.21426 4.66615 4.74057 4.83589 5.00689 5.10792 5.29030 5.39670 5.81944 6.22135 6.87100 7.07308 7.15336 7.44331 7.69173 8.48661 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.037222 B = 0.007198 C = 0.006281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.057285 B = 3889.273497 C = 4456.827781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.122 4.122 3 C 0.226 3.774 4 N -0.399 5.399 5 C -0.339 4.339 6 H 0.095 0.905 7 C 0.003 3.997 8 N -0.861 5.861 9 Si 1.006 2.994 10 H -0.275 1.275 11 H -0.264 1.264 12 H -0.263 1.263 13 C 0.482 3.518 14 O -0.616 6.616 15 C -0.050 4.050 16 N -0.240 5.240 17 N -0.303 5.303 18 C -0.006 4.006 19 C -0.071 4.071 20 S 0.219 5.781 21 H 0.231 0.769 22 H 0.093 0.907 23 H 0.110 0.890 24 H 0.282 0.718 25 H 0.111 0.889 26 H 0.113 0.887 27 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.024 -11.601 -0.005 11.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.123 4.123 3 C 0.104 3.896 4 N -0.114 5.114 5 C -0.468 4.468 6 H 0.112 0.888 7 C -0.203 4.203 8 N -0.496 5.496 9 Si 0.828 3.172 10 H -0.201 1.201 11 H -0.188 1.188 12 H -0.187 1.187 13 C 0.270 3.730 14 O -0.505 6.505 15 C -0.328 4.328 16 N -0.083 5.083 17 N -0.143 5.143 18 C -0.283 4.283 19 C -0.132 4.132 20 S 0.462 5.538 21 H 0.248 0.752 22 H 0.111 0.889 23 H 0.128 0.872 24 H 0.093 0.907 25 H 0.130 0.870 26 H 0.131 0.869 27 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.002 -11.345 -0.098 11.345 hybrid contribution -0.178 1.137 -0.001 1.151 sum -0.180 -10.208 -0.100 10.210 Atomic orbital electron populations 1.25025 0.96306 1.06555 1.00669 1.23059 0.94508 0.95197 0.99565 1.18740 0.85302 1.01380 0.84163 1.43820 1.50439 1.07336 1.09779 1.20018 1.27756 0.81538 1.17474 0.88766 1.26409 0.94749 1.03948 0.95169 1.70092 1.25483 1.33429 1.20626 0.84746 0.78878 0.75327 0.78275 1.20054 1.18838 1.18678 1.16758 0.88022 0.82953 0.85312 1.90625 1.56524 1.83711 1.19602 1.29643 1.06319 1.01334 0.95476 1.72335 1.11843 1.07579 1.16590 1.71253 1.19450 0.96654 1.26983 1.30196 0.99745 1.05710 0.92657 1.20714 1.05694 0.80243 1.06500 1.84307 1.55429 0.95790 1.18231 0.75228 0.88933 0.87204 0.90743 0.87046 0.86891 0.87673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -12.04 19.25 74.32 1.43 -10.61 15 2 C -0.12 -6.05 10.45 31.12 0.33 -5.72 15 3 C 0.23 11.30 4.75 84.57 0.40 11.70 15 4 N -0.40 -21.75 2.60 -649.48 -1.69 -23.44 15 5 C -0.34 -18.86 9.32 84.13 0.78 -18.08 15 6 H 0.09 5.42 7.39 -2.91 -0.02 5.40 15 7 C 0.00 0.15 5.21 84.97 0.44 0.60 15 8 N -0.86 -44.14 8.92 21.69 0.19 -43.94 15 9 Si 1.01 40.36 29.56 68.60 2.03 42.38 15 10 H -0.27 -11.06 7.11 99.48 0.71 -10.35 15 11 H -0.26 -9.88 7.11 99.48 0.71 -9.17 15 12 H -0.26 -10.34 7.11 99.48 0.71 -9.63 15 13 C 0.48 25.78 7.53 86.58 0.65 26.43 15 14 O -0.62 -35.70 16.68 -4.21 -0.07 -35.77 15 15 C -0.05 -2.25 7.21 87.18 0.63 -1.62 15 16 N -0.24 -10.43 7.35 -49.78 -0.37 -10.79 15 17 N -0.30 -11.18 11.59 -50.60 -0.59 -11.77 15 18 C -0.01 -0.16 7.53 88.40 0.67 0.51 15 19 C -0.07 -1.05 10.48 71.24 0.75 -0.30 15 20 S 0.22 7.04 23.13 -56.49 -1.31 5.74 15 21 H 0.23 8.23 7.80 -4.41 -0.03 8.19 15 22 H 0.09 4.41 5.60 -2.38 -0.01 4.40 15 23 H 0.11 5.63 6.09 -2.39 -0.01 5.62 15 24 H 0.28 13.46 8.31 -92.71 -0.77 12.69 15 25 H 0.11 1.26 8.14 -2.39 -0.02 1.24 15 26 H 0.11 1.05 8.14 -2.38 -0.02 1.03 15 27 H 0.10 1.38 8.14 -2.39 -0.02 1.36 15 Total: -1.00 -69.39 262.49 5.49 -63.91 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 1.21 Total: 10.78 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 6.08 Total: 2.91 kcal Atomic # 7 Polarization: -87.49 SS G_CDS: -2.45 Total: -89.94 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -0.07 Total: -35.77 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.38 kcal Atomic # 16 Polarization: 7.04 SS G_CDS: -1.31 Total: 5.74 kcal Total: -69.39 5.49 -63.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847178434.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.269 kcal (2) G-P(sol) polarization free energy of solvation -69.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds