Wall clock time and date at job start Sun Mar 29 2020 22:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46898 * 110.99816 * 2 1 4 4 C 1.53003 * 109.46820 * 163.93659 * 3 2 1 5 5 H 1.09000 * 109.46845 * 57.07709 * 4 3 2 6 6 C 1.47195 * 109.47100 * 297.07263 * 4 3 2 7 7 N 3.63463 * 127.91483 * 81.12063 * 2 1 3 8 8 C 1.52998 * 109.47030 * 177.07536 * 4 3 2 9 9 C 1.50703 * 109.47335 * 185.00259 * 8 4 3 10 10 H 1.08001 * 119.99420 * 359.97438 * 9 8 4 11 11 C 1.37872 * 120.00100 * 179.72352 * 9 8 4 12 12 N 1.31509 * 120.00205 * 180.27031 * 11 9 8 13 13 Si 1.86799 * 120.00091 * 0.27509 * 11 9 8 14 14 H 1.48498 * 109.47221 * 89.99650 * 13 11 9 15 15 H 1.48500 * 109.47453 * 209.99980 * 13 11 9 16 16 H 1.48508 * 109.47082 * 329.99923 * 13 11 9 17 17 C 1.46901 * 110.99957 * 236.04380 * 2 1 3 18 18 C 1.52998 * 109.47463 * 293.95665 * 17 2 1 19 19 H 1.09006 * 115.54730 * 29.41213 * 18 17 2 20 20 C 1.53005 * 117.49868 * 243.74886 * 18 17 2 21 21 C 1.53000 * 117.50264 * 175.08811 * 18 17 2 22 22 C 1.52994 * 117.49867 * 214.98081 * 21 18 17 23 23 C 1.53004 * 117.49543 * 359.97438 * 21 18 17 24 24 H 1.09002 * 109.47063 * 65.92435 * 1 2 3 25 25 H 1.09003 * 109.46682 * 185.92276 * 1 2 3 26 26 H 1.08998 * 109.47471 * 305.92252 * 1 2 3 27 27 H 1.08993 * 109.47321 * 43.93673 * 3 2 1 28 28 H 1.08994 * 109.46878 * 283.93329 * 3 2 1 29 29 H 1.09001 * 109.47403 * 64.99601 * 8 4 3 30 30 H 1.09001 * 109.47200 * 305.00027 * 8 4 3 31 31 H 0.97001 * 120.00327 * 180.02562 * 12 11 9 32 32 H 1.08999 * 109.47050 * 53.95435 * 17 2 1 33 33 H 1.09000 * 109.46961 * 173.95320 * 17 2 1 34 34 H 1.08999 * 117.49311 * 359.97438 * 20 18 17 35 35 H 1.08999 * 117.49649 * 144.99285 * 20 18 17 36 36 H 1.08997 * 109.47905 * 59.99477 * 22 21 18 37 37 H 1.09000 * 109.46897 * 180.02562 * 22 21 18 38 38 H 1.09008 * 109.47211 * 299.99411 * 22 21 18 39 39 H 1.09001 * 109.46776 * 60.00261 * 23 21 18 40 40 H 1.08999 * 109.46650 * 179.97438 * 23 21 18 41 41 H 1.08994 * 109.47394 * 300.00634 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.4723 1.3508 0.3992 5 1 4.0242 0.7046 -0.2835 6 6 3.6022 0.8382 1.7729 7 7 3.7025 0.4426 2.8331 8 6 4.0396 2.7700 0.3286 9 6 5.5212 2.7330 0.6019 10 1 6.0092 1.7914 0.8059 11 6 6.2544 3.9004 0.5863 12 7 7.5482 3.8675 0.8195 13 14 5.4101 5.5291 0.2341 14 1 4.9440 6.1310 1.5091 15 1 6.3684 6.4507 -0.4273 16 1 4.2463 5.3002 -0.6597 17 6 1.9955 -0.7660 -1.1376 18 6 1.6315 -2.2426 -0.9704 19 1 0.7099 -2.4406 -0.4229 20 6 2.7806 -3.2389 -0.8027 21 6 1.9919 -3.1931 -2.1139 22 6 1.0315 -4.3487 -2.4013 23 6 2.6884 -2.5939 -3.3375 24 1 -0.3633 0.4192 -0.9383 25 1 -0.3633 -1.0222 0.1060 26 1 -0.3634 0.6029 0.8322 27 1 1.4348 1.9758 0.7130 28 1 1.8946 1.7992 -0.9974 29 1 3.5481 3.3952 1.0740 30 1 3.8636 3.1826 -0.6648 31 1 8.0641 4.6890 0.8089 32 1 1.5611 -0.3873 -2.0628 33 1 3.0798 -0.6611 -1.1756 34 1 3.7958 -2.8423 -0.8120 35 1 2.6149 -4.0922 -0.1451 36 1 0.0496 -3.9504 -2.6566 37 1 1.4124 -4.9390 -3.2347 38 1 0.9484 -4.9807 -1.5170 39 1 3.6310 -2.1394 -3.0326 40 1 2.8836 -3.3809 -4.0659 41 1 2.0471 -1.8348 -3.7851 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852774741.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:46 Heat of formation + Delta-G solvation = 37.631484 kcal Electronic energy + Delta-G solvation = -18358.725470 eV Core-core repulsion = 15660.054468 eV Total energy + Delta-G solvation = -2698.671002 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.21762 -37.48075 -35.49102 -33.56626 -31.83459 -29.77418 -27.95907 -27.82260 -26.82007 -24.62480 -22.02219 -21.41049 -20.54413 -18.72884 -16.88012 -16.81935 -15.70729 -15.26662 -14.91930 -14.31000 -14.13604 -13.86136 -13.69414 -13.22414 -13.13242 -12.67893 -12.49999 -12.41724 -12.30272 -12.07637 -11.89926 -11.72888 -11.63941 -11.37315 -11.31427 -11.23204 -10.94535 -10.74268 -10.24281 -9.96704 -9.79935 -9.74219 -9.55070 -9.31067 -8.60854 -8.20278 -6.09726 -4.10242 3.27276 3.34645 3.35156 3.58034 3.75368 3.84537 4.04977 4.38889 4.61153 4.73085 4.81546 4.85579 4.98381 5.22047 5.25302 5.29631 5.38597 5.47068 5.47608 5.59755 5.60605 5.74150 5.77123 5.80871 5.82780 5.86149 5.89597 5.91547 5.94748 6.01599 6.22023 6.22898 6.26721 6.38524 6.95534 7.08823 7.13595 7.18426 7.64862 8.42059 8.60606 8.94127 9.50180 11.03430 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.025550 B = 0.004928 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.636561 B = 5680.743302 C = 5870.831014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.543 5.543 3 C 0.059 3.941 4 C 0.022 3.978 5 H 0.103 0.897 6 C 0.255 3.745 7 N -0.473 5.473 8 C -0.006 4.006 9 C -0.527 4.527 10 H 0.074 0.926 11 C 0.072 3.928 12 N -0.897 5.897 13 Si 0.877 3.123 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.263 1.263 17 C 0.082 3.918 18 C -0.135 4.135 19 H 0.105 0.895 20 C -0.166 4.166 21 C -0.133 4.133 22 C -0.113 4.113 23 C -0.116 4.116 24 H 0.024 0.976 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.053 0.947 29 H 0.021 0.979 30 H 0.036 0.964 31 H 0.264 0.736 32 H 0.039 0.961 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.993 -10.686 -9.461 20.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.266 5.266 3 C -0.070 4.070 4 C 0.000 4.000 5 H 0.121 0.879 6 C -0.062 4.062 7 N -0.149 5.149 8 C -0.045 4.045 9 C -0.565 4.565 10 H 0.092 0.908 11 C -0.131 4.131 12 N -0.535 5.535 13 Si 0.704 3.296 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.188 1.188 17 C -0.045 4.045 18 C -0.153 4.153 19 H 0.123 0.877 20 C -0.203 4.203 21 C -0.134 4.134 22 C -0.170 4.170 23 C -0.173 4.173 24 H 0.042 0.958 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.072 0.928 29 H 0.039 0.961 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.522 -11.398 -7.416 19.895 hybrid contribution -0.514 1.468 -1.184 1.955 sum -15.037 -9.930 -8.600 19.967 Atomic orbital electron populations 1.22384 0.87661 1.01990 1.00193 1.61930 1.07531 1.13931 1.43239 1.22272 0.94983 0.88691 1.01014 1.18964 0.95040 1.00234 0.85793 0.87923 1.28654 0.91399 0.91658 0.94482 1.80987 1.10145 1.10995 1.12809 1.19650 0.97558 0.89374 0.97890 1.21025 0.90551 0.95791 1.49090 0.90790 1.24982 0.94671 0.99024 0.94389 1.69904 1.06261 1.28152 1.49218 0.86826 0.79769 0.83960 0.79029 1.20231 1.21273 1.18765 1.21756 1.00667 0.91028 0.91066 1.22410 0.99859 0.91578 1.01494 0.87744 1.23296 0.96876 1.01563 0.98523 1.21638 1.01695 0.99366 0.90689 1.21329 0.98052 0.96121 1.01475 1.21342 0.99909 1.00311 0.95742 0.95751 0.91522 0.91581 0.90210 0.92840 0.96100 0.94591 0.92579 0.94292 0.89942 0.88574 0.89191 0.92518 0.92294 0.92642 0.92024 0.92404 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.33 60.07 0.56 0.84 16 2 N -0.54 -7.20 4.36 -242.92 -1.06 -8.26 16 3 C 0.06 0.84 4.36 -3.82 -0.02 0.83 16 4 C 0.02 0.39 2.22 -93.41 -0.21 0.19 16 5 H 0.10 1.79 6.51 -51.93 -0.34 1.46 16 6 C 0.26 5.40 13.62 -20.76 -0.28 5.12 16 7 N -0.47 -10.97 18.54 42.16 0.78 -10.19 16 8 C -0.01 -0.12 3.49 -27.88 -0.10 -0.22 16 9 C -0.53 -14.26 9.15 -34.44 -0.32 -14.58 16 10 H 0.07 2.20 7.84 -52.49 -0.41 1.79 16 11 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 12 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 13 Si 0.88 20.68 27.47 -169.99 -4.67 16.01 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 17 C 0.08 0.99 4.17 -3.82 -0.02 0.97 16 18 C -0.13 -1.50 5.41 -90.62 -0.49 -1.99 16 19 H 0.10 1.16 6.40 -51.93 -0.33 0.83 16 20 C -0.17 -1.86 9.47 -26.69 -0.25 -2.12 16 21 C -0.13 -1.31 2.70 -154.47 -0.42 -1.72 16 22 C -0.11 -0.93 9.85 37.15 0.37 -0.57 16 23 C -0.12 -1.07 8.86 37.16 0.33 -0.74 16 24 H 0.02 0.24 8.13 -51.93 -0.42 -0.18 16 25 H 0.07 0.67 6.39 -51.93 -0.33 0.34 16 26 H 0.07 0.70 7.96 -51.93 -0.41 0.29 16 27 H 0.08 1.11 7.87 -51.93 -0.41 0.70 16 28 H 0.05 0.68 8.05 -51.93 -0.42 0.26 16 29 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 30 H 0.04 0.73 7.19 -51.93 -0.37 0.36 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.04 0.43 7.74 -51.93 -0.40 0.03 16 33 H 0.08 1.07 6.10 -51.93 -0.32 0.76 16 34 H 0.10 1.16 7.94 -51.93 -0.41 0.74 16 35 H 0.09 0.97 8.05 -51.93 -0.42 0.55 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.44 7.92 -51.93 -0.41 0.03 16 38 H 0.05 0.45 7.90 -51.92 -0.41 0.04 16 39 H 0.06 0.60 7.90 -51.93 -0.41 0.19 16 40 H 0.06 0.48 7.92 -51.93 -0.41 0.06 16 41 H 0.06 0.52 7.83 -51.93 -0.41 0.11 16 LS Contribution 332.86 15.07 5.02 5.02 Total: -1.00 -31.00 332.86 -7.13 -38.12 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -7.03 Total: -2.25 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -0.94 Total: -12.08 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: 0.50 Total: -44.82 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.67 Total: 16.01 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.00 -7.13 -38.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852774741.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.753 kcal (2) G-P(sol) polarization free energy of solvation -30.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds