Wall clock time and date at job start Sun Mar 29 2020 22:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46898 * 110.99816 * 2 1 4 4 C 1.53003 * 109.46820 * 163.93659 * 3 2 1 5 5 H 1.09000 * 109.46845 * 57.07709 * 4 3 2 6 6 C 1.47195 * 109.47100 * 297.07263 * 4 3 2 7 7 N 3.63463 * 127.91483 * 81.12063 * 2 1 3 8 8 C 1.52998 * 109.47030 * 177.07536 * 4 3 2 9 9 C 1.50703 * 109.47335 * 185.00259 * 8 4 3 10 10 H 1.08001 * 119.99420 * 359.97438 * 9 8 4 11 11 C 1.37872 * 120.00100 * 179.72352 * 9 8 4 12 12 N 1.31509 * 120.00205 * 180.27031 * 11 9 8 13 13 Si 1.86799 * 120.00091 * 0.27509 * 11 9 8 14 14 H 1.48498 * 109.47221 * 89.99650 * 13 11 9 15 15 H 1.48500 * 109.47453 * 209.99980 * 13 11 9 16 16 H 1.48508 * 109.47082 * 329.99923 * 13 11 9 17 17 C 1.46901 * 110.99957 * 236.04380 * 2 1 3 18 18 C 1.52998 * 109.47463 * 293.95665 * 17 2 1 19 19 H 1.09006 * 115.54730 * 29.41213 * 18 17 2 20 20 C 1.53005 * 117.49868 * 243.74886 * 18 17 2 21 21 C 1.53000 * 117.50264 * 175.08811 * 18 17 2 22 22 C 1.52994 * 117.49867 * 214.98081 * 21 18 17 23 23 C 1.53004 * 117.49543 * 359.97438 * 21 18 17 24 24 H 1.09002 * 109.47063 * 65.92435 * 1 2 3 25 25 H 1.09003 * 109.46682 * 185.92276 * 1 2 3 26 26 H 1.08998 * 109.47471 * 305.92252 * 1 2 3 27 27 H 1.08993 * 109.47321 * 43.93673 * 3 2 1 28 28 H 1.08994 * 109.46878 * 283.93329 * 3 2 1 29 29 H 1.09001 * 109.47403 * 64.99601 * 8 4 3 30 30 H 1.09001 * 109.47200 * 305.00027 * 8 4 3 31 31 H 0.97001 * 120.00327 * 180.02562 * 12 11 9 32 32 H 1.08999 * 109.47050 * 53.95435 * 17 2 1 33 33 H 1.09000 * 109.46961 * 173.95320 * 17 2 1 34 34 H 1.08999 * 117.49311 * 359.97438 * 20 18 17 35 35 H 1.08999 * 117.49649 * 144.99285 * 20 18 17 36 36 H 1.08997 * 109.47905 * 59.99477 * 22 21 18 37 37 H 1.09000 * 109.46897 * 180.02562 * 22 21 18 38 38 H 1.09008 * 109.47211 * 299.99411 * 22 21 18 39 39 H 1.09001 * 109.46776 * 60.00261 * 23 21 18 40 40 H 1.08999 * 109.46650 * 179.97438 * 23 21 18 41 41 H 1.08994 * 109.47394 * 300.00634 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.4723 1.3508 0.3992 5 1 4.0242 0.7046 -0.2835 6 6 3.6022 0.8382 1.7729 7 7 3.7025 0.4426 2.8331 8 6 4.0396 2.7700 0.3286 9 6 5.5212 2.7330 0.6019 10 1 6.0092 1.7914 0.8059 11 6 6.2544 3.9004 0.5863 12 7 7.5482 3.8675 0.8195 13 14 5.4101 5.5291 0.2341 14 1 4.9440 6.1310 1.5091 15 1 6.3684 6.4507 -0.4273 16 1 4.2463 5.3002 -0.6597 17 6 1.9955 -0.7660 -1.1376 18 6 1.6315 -2.2426 -0.9704 19 1 0.7099 -2.4406 -0.4229 20 6 2.7806 -3.2389 -0.8027 21 6 1.9919 -3.1931 -2.1139 22 6 1.0315 -4.3487 -2.4013 23 6 2.6884 -2.5939 -3.3375 24 1 -0.3633 0.4192 -0.9383 25 1 -0.3633 -1.0222 0.1060 26 1 -0.3634 0.6029 0.8322 27 1 1.4348 1.9758 0.7130 28 1 1.8946 1.7992 -0.9974 29 1 3.5481 3.3952 1.0740 30 1 3.8636 3.1826 -0.6648 31 1 8.0641 4.6890 0.8089 32 1 1.5611 -0.3873 -2.0628 33 1 3.0798 -0.6611 -1.1756 34 1 3.7958 -2.8423 -0.8120 35 1 2.6149 -4.0922 -0.1451 36 1 0.0496 -3.9504 -2.6566 37 1 1.4124 -4.9390 -3.2347 38 1 0.9484 -4.9807 -1.5170 39 1 3.6310 -2.1394 -3.0326 40 1 2.8836 -3.3809 -4.0659 41 1 2.0471 -1.8348 -3.7851 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852774741.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:45 Heat of formation + Delta-G solvation = 19.185029 kcal Electronic energy + Delta-G solvation = -18359.525369 eV Core-core repulsion = 15660.054468 eV Total energy + Delta-G solvation = -2699.470900 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.14324 -38.69261 -36.91444 -35.40809 -33.66508 -30.60917 -29.40442 -28.68409 -27.63730 -26.00717 -23.25170 -23.09762 -21.46823 -19.53772 -18.88871 -18.29003 -16.78398 -16.49998 -16.04331 -15.84007 -15.09403 -14.98963 -14.83506 -14.56595 -14.41993 -14.12182 -13.81491 -13.53948 -13.29952 -13.14839 -13.14501 -12.98212 -12.76280 -12.69042 -12.61126 -12.40453 -12.16806 -11.84938 -11.80260 -11.69265 -11.47595 -11.23404 -10.73302 -10.64655 -10.36735 -9.14896 -8.24111 -6.29977 1.43800 1.44933 1.56002 2.06698 2.14704 2.41586 2.72217 3.08808 3.13024 3.35160 3.75214 3.90852 3.97017 4.14863 4.25782 4.29342 4.41016 4.54886 4.63991 4.66870 4.73820 4.77119 4.83289 4.89454 4.92271 4.95614 4.99112 5.10209 5.10699 5.12358 5.15807 5.24458 5.32773 5.37924 5.44426 5.54725 5.63931 6.14001 6.23214 6.28224 6.77348 6.92527 7.34453 8.92967 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.025550 B = 0.004928 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.636561 B = 5680.743302 C = 5870.831014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.562 5.562 3 C 0.069 3.931 4 C 0.026 3.974 5 H 0.107 0.893 6 C 0.265 3.735 7 N -0.517 5.517 8 C -0.003 4.003 9 C -0.531 4.531 10 H 0.026 0.974 11 C 0.004 3.996 12 N -0.955 5.955 13 Si 0.948 3.052 14 H -0.276 1.276 15 H -0.289 1.289 16 H -0.222 1.222 17 C 0.085 3.915 18 C -0.138 4.138 19 H 0.107 0.893 20 C -0.185 4.185 21 C -0.118 4.118 22 C -0.112 4.112 23 C -0.117 4.117 24 H 0.040 0.960 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.027 0.973 30 H 0.064 0.936 31 H 0.265 0.735 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.068 0.932 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.984 -9.960 -11.397 23.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.287 5.287 3 C -0.060 4.060 4 C 0.004 3.996 5 H 0.124 0.876 6 C -0.051 4.051 7 N -0.194 5.194 8 C -0.042 4.042 9 C -0.569 4.569 10 H 0.045 0.955 11 C -0.193 4.193 12 N -0.595 5.595 13 Si 0.771 3.229 14 H -0.202 1.202 15 H -0.215 1.215 16 H -0.145 1.145 17 C -0.042 4.042 18 C -0.157 4.157 19 H 0.125 0.875 20 C -0.222 4.222 21 C -0.119 4.119 22 C -0.169 4.169 23 C -0.174 4.174 24 H 0.059 0.941 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.105 0.895 28 H 0.097 0.903 29 H 0.045 0.955 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.548 -10.699 -9.365 22.585 hybrid contribution 0.489 1.124 -0.551 1.344 sum -17.058 -9.575 -9.916 21.932 Atomic orbital electron populations 1.22405 0.85842 1.02654 1.01076 1.61847 1.09221 1.13418 1.44185 1.22149 0.91695 0.89751 1.02433 1.19076 0.98271 0.98184 0.84064 0.87577 1.29373 0.90008 0.90710 0.94984 1.80978 1.11806 1.12340 1.14325 1.19597 0.93646 0.91645 0.99285 1.21385 0.93647 0.93895 1.47986 0.95546 1.26039 0.95204 1.03740 0.94317 1.70089 1.08513 1.29346 1.51582 0.85698 0.79709 0.78014 0.79495 1.20188 1.21510 1.14453 1.21724 0.99726 0.91440 0.91359 1.22407 0.99517 0.91227 1.02511 0.87538 1.23303 0.96389 1.02054 1.00413 1.21736 1.00896 0.99151 0.90094 1.21354 0.98081 0.95584 1.01891 1.21373 0.99477 1.00874 0.95717 0.94131 0.90900 0.91480 0.89506 0.90250 0.95471 0.91775 0.92651 0.92797 0.91579 0.90144 0.89130 0.91548 0.91316 0.92661 0.93154 0.91268 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.33 127.69 1.19 1.71 16 2 N -0.56 -13.58 4.36 -922.45 -4.02 -17.60 16 3 C 0.07 1.74 4.36 86.30 0.38 2.12 16 4 C 0.03 0.91 2.22 -12.60 -0.03 0.88 16 5 H 0.11 3.66 6.51 -2.39 -0.02 3.64 16 6 C 0.27 11.25 13.62 89.44 1.22 12.47 16 7 N -0.52 -24.41 18.54 20.01 0.37 -24.04 16 8 C 0.00 -0.11 3.49 29.85 0.10 -0.01 16 9 C -0.53 -29.06 9.15 25.60 0.23 -28.82 16 10 H 0.03 1.64 7.84 -2.91 -0.02 1.62 16 11 C 0.00 0.20 5.47 84.65 0.46 0.67 16 12 N -0.95 -59.54 13.96 21.44 0.30 -59.24 16 13 Si 0.95 41.53 27.47 68.60 1.88 43.42 16 14 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 15 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 16 H -0.22 -8.23 6.54 99.48 0.65 -7.58 16 17 C 0.08 1.87 4.17 86.30 0.36 2.23 16 18 C -0.14 -2.87 5.41 -10.79 -0.06 -2.93 16 19 H 0.11 2.17 6.40 -2.38 -0.02 2.15 16 20 C -0.18 -4.13 9.47 30.62 0.29 -3.84 16 21 C -0.12 -2.13 2.70 -52.16 -0.14 -2.27 16 22 C -0.11 -1.60 9.85 71.98 0.71 -0.90 16 23 C -0.12 -1.96 8.86 71.98 0.64 -1.32 16 24 H 0.04 0.63 8.13 -2.39 -0.02 0.61 16 25 H 0.07 1.26 6.39 -2.39 -0.02 1.24 16 26 H 0.07 1.23 7.96 -2.39 -0.02 1.21 16 27 H 0.09 2.11 7.87 -2.39 -0.02 2.09 16 28 H 0.08 1.64 8.05 -2.39 -0.02 1.63 16 29 H 0.03 1.09 7.57 -2.39 -0.02 1.07 16 30 H 0.06 2.32 7.19 -2.39 -0.02 2.30 16 31 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 32 H 0.05 1.03 7.74 -2.39 -0.02 1.01 16 33 H 0.07 1.66 6.10 -2.39 -0.01 1.65 16 34 H 0.08 2.02 7.94 -2.39 -0.02 2.00 16 35 H 0.09 1.96 8.05 -2.39 -0.02 1.94 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 0.86 7.92 -2.39 -0.02 0.84 16 38 H 0.05 0.80 7.90 -2.38 -0.02 0.78 16 39 H 0.05 0.95 7.90 -2.39 -0.02 0.93 16 40 H 0.07 0.99 7.92 -2.39 -0.02 0.97 16 41 H 0.07 1.01 7.83 -2.39 -0.02 0.99 16 Total: -1.00 -68.99 332.86 4.82 -64.18 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.93 Total: 13.30 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: 5.36 Total: -20.01 kcal Atomic # 7 Polarization: -97.53 SS G_CDS: -3.35 Total: -100.88 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 1.88 Total: 43.42 kcal Total: -68.99 4.82 -64.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852774741.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.360 kcal (2) G-P(sol) polarization free energy of solvation -68.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds