Wall clock time and date at job start Sun Mar 29 2020 23:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47412 * 2 1 4 4 C 1.47200 * 109.47353 * 119.99962 * 2 1 3 5 5 N 2.60793 * 109.47219 * 119.99887 * 2 1 3 6 6 O 1.42896 * 109.46992 * 240.00006 * 2 1 3 7 7 C 1.35009 * 117.00154 * 90.00382 * 6 2 1 8 8 O 1.21685 * 119.99904 * 359.97438 * 7 6 2 9 9 C 1.41759 * 119.99902 * 180.27552 * 7 6 2 10 10 S 1.75836 * 125.45893 * 359.74637 * 9 7 6 11 11 C 1.75646 * 91.49105 * 179.97438 * 10 9 7 12 12 C 1.32875 * 110.86969 * 0.02562 * 11 10 9 13 13 C 1.39678 * 115.27383 * 359.74310 * 12 11 10 14 14 C 1.40505 * 123.35958 * 180.27048 * 13 12 11 15 15 H 1.08012 * 120.00059 * 154.82793 * 14 13 12 16 16 C 1.40337 * 120.00380 * 334.82686 * 14 13 12 17 17 N 1.30618 * 119.99791 * 349.95886 * 16 14 13 18 18 Si 1.86796 * 120.00208 * 169.95893 * 16 14 13 19 19 H 1.48498 * 109.47513 * 0.02562 * 18 16 14 20 20 H 1.48509 * 109.47222 * 120.00396 * 18 16 14 21 21 H 1.48500 * 109.47339 * 239.99837 * 18 16 14 22 22 H 1.09000 * 109.47019 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47043 * 300.00118 * 1 2 3 24 24 H 1.08999 * 109.46915 * 59.99598 * 1 2 3 25 25 H 1.07996 * 124.56777 * 179.97438 * 11 10 9 26 26 H 1.07993 * 122.36529 * 180.02562 * 12 11 10 27 27 H 0.96998 * 120.00507 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6939 1.2019 5 7 2.3993 -1.2293 2.1294 6 8 2.0063 -0.6736 -1.1667 7 6 2.2107 0.0792 -2.2687 8 8 1.9894 1.2754 -2.2379 9 6 2.6769 -0.5249 -3.4633 10 16 3.0401 -2.2331 -3.6682 11 6 3.4996 -1.9814 -5.3447 12 6 3.3759 -0.7023 -5.6825 13 6 2.9166 0.1407 -4.6679 14 6 2.7187 1.5210 -4.8407 15 1 2.0126 2.0477 -4.2157 16 6 3.4385 2.2153 -5.8252 17 7 4.4275 1.6299 -6.4458 18 14 2.9820 3.9766 -6.2482 19 1 1.8348 4.4059 -5.4087 20 1 4.1438 4.8648 -5.9896 21 1 2.6052 4.0596 -7.6821 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 3.8379 -2.7611 -6.0110 26 1 3.6094 -0.3408 -6.6729 27 1 4.9249 2.1096 -7.1266 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870044321.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:12:06 Heat of formation + Delta-G solvation = -52.905611 kcal Electronic energy + Delta-G solvation = -15494.528873 eV Core-core repulsion = 12729.466813 eV Total energy + Delta-G solvation = -2765.062060 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.040 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.28353 -38.83881 -37.85610 -36.74512 -35.07107 -32.87862 -30.93365 -28.66214 -25.86655 -24.36595 -22.44261 -20.66934 -19.80011 -19.23407 -18.02404 -17.18895 -16.94280 -16.75732 -15.61641 -15.37275 -15.11300 -14.38978 -14.25498 -14.23426 -13.90545 -13.73757 -13.42868 -13.14103 -13.03898 -12.93368 -12.78908 -12.31078 -12.16934 -11.99302 -11.58063 -11.44030 -11.09435 -10.79203 -9.42321 -9.08220 -8.95383 -6.59713 0.07718 1.09029 1.35982 1.37159 1.40014 1.49797 1.55823 1.78543 1.90367 2.17250 2.29550 2.34642 2.92917 3.23828 3.90513 4.02169 4.41450 4.55264 4.77296 4.91150 5.06048 5.14886 5.17873 5.35993 5.58931 5.63619 5.83054 6.22294 6.32683 6.51286 6.64260 7.37403 7.96646 Molecular weight = 251.04amu Principal moments of inertia in cm(-1) A = 0.022594 B = 0.007531 C = 0.005986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.983998 B = 3717.258322 C = 4676.839477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.182 3.818 3 H 0.125 0.875 4 C 0.240 3.760 5 N -0.442 5.442 6 O -0.364 6.364 7 C 0.534 3.466 8 O -0.563 6.563 9 C -0.452 4.452 10 S 0.005 5.995 11 C -0.179 4.179 12 C -0.134 4.134 13 C 0.118 3.882 14 C -0.385 4.385 15 H 0.098 0.902 16 C 0.033 3.967 17 N -0.775 5.775 18 Si 0.995 3.005 19 H -0.261 1.261 20 H -0.261 1.261 21 H -0.249 1.249 22 H 0.075 0.925 23 H 0.107 0.893 24 H 0.075 0.925 25 H 0.179 0.821 26 H 0.145 0.855 27 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.953 0.578 -0.075 3.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.123 3.877 3 H 0.142 0.858 4 C -0.078 4.078 5 N -0.121 5.121 6 O -0.282 6.282 7 C 0.392 3.608 8 O -0.461 6.461 9 C -0.568 4.568 10 S 0.261 5.739 11 C -0.314 4.314 12 C -0.166 4.166 13 C 0.107 3.893 14 C -0.415 4.415 15 H 0.116 0.884 16 C -0.190 4.190 17 N -0.398 5.398 18 Si 0.813 3.187 19 H -0.185 1.185 20 H -0.185 1.185 21 H -0.172 1.172 22 H 0.094 0.906 23 H 0.126 0.874 24 H 0.094 0.906 25 H 0.196 0.804 26 H 0.162 0.838 27 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.319 -1.156 2.098 4.093 hybrid contribution 0.090 1.910 -1.332 2.330 sum -3.229 0.754 0.766 3.403 Atomic orbital electron populations 1.22161 0.89263 1.04557 1.05208 1.19387 0.96712 0.95542 0.76089 0.85762 1.28828 0.92245 0.92769 0.93987 1.81151 1.09070 1.08805 1.13041 1.86297 1.79603 1.42358 1.19963 1.18218 0.76226 0.84442 0.81873 1.90692 1.55296 1.16106 1.84039 1.21318 1.41594 0.97304 0.96538 1.83113 1.73443 1.08215 1.09083 1.25692 1.06424 1.00390 0.98853 1.20567 1.02477 0.92270 1.01253 1.17326 0.88358 0.94714 0.88940 1.20380 1.16235 0.93303 1.11575 0.88369 1.27208 0.92820 1.06163 0.92781 1.69638 1.12587 1.40657 1.16951 0.84941 0.79798 0.74332 0.79582 1.18480 1.18500 1.17239 0.90557 0.87431 0.90621 0.80372 0.83770 0.88147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.49 71.98 0.68 -3.07 15 2 C 0.18 5.71 2.97 28.79 0.09 5.79 15 3 H 0.13 3.87 7.11 -2.38 -0.02 3.85 15 4 C 0.24 7.59 15.03 89.44 1.34 8.93 15 5 N -0.44 -15.18 18.54 20.00 0.37 -14.81 15 6 O -0.36 -14.83 9.48 -59.28 -0.56 -15.40 15 7 C 0.53 25.49 7.69 68.69 0.53 26.01 15 8 O -0.56 -28.11 13.57 19.23 0.26 -27.85 15 9 C -0.45 -22.48 6.36 23.49 0.15 -22.33 15 10 S 0.01 0.23 23.02 -56.49 -1.30 -1.07 15 11 C -0.18 -7.20 11.11 66.64 0.74 -6.46 15 12 C -0.13 -6.11 8.81 21.44 0.19 -5.92 15 13 C 0.12 5.99 5.53 -22.03 -0.12 5.86 15 14 C -0.39 -19.48 8.40 23.33 0.20 -19.28 15 15 H 0.10 5.19 6.07 -2.90 -0.02 5.17 15 16 C 0.03 1.45 5.37 85.38 0.46 1.91 15 17 N -0.78 -34.15 10.86 21.89 0.24 -33.91 15 18 Si 0.99 33.82 29.57 68.60 2.03 35.85 15 19 H -0.26 -9.25 7.11 99.48 0.71 -8.54 15 20 H -0.26 -8.52 7.11 99.48 0.71 -7.81 15 21 H -0.25 -7.68 7.11 99.48 0.71 -6.97 15 22 H 0.08 1.77 8.14 -2.39 -0.02 1.75 15 23 H 0.11 1.91 8.14 -2.39 -0.02 1.90 15 24 H 0.07 2.03 8.14 -2.39 -0.02 2.01 15 25 H 0.18 5.65 8.06 -2.91 -0.02 5.63 15 26 H 0.14 6.49 6.37 -2.91 -0.02 6.47 15 27 H 0.31 11.69 8.29 -92.71 -0.77 10.93 15 Total: -1.00 -57.84 267.44 6.51 -51.34 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 1.22 Total: 14.38 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 4.25 Total: -8.54 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: 0.61 Total: -48.72 kcal Atomic # 8 Polarization: -42.94 SS G_CDS: -0.30 Total: -43.24 kcal Atomic # 14 Polarization: 33.82 SS G_CDS: 2.03 Total: 35.85 kcal Atomic # 16 Polarization: 0.23 SS G_CDS: -1.30 Total: -1.07 kcal Total: -57.84 6.51 -51.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870044321.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.571 kcal (2) G-P(sol) polarization free energy of solvation -57.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds