Wall clock time and date at job start Sun Mar 29 2020 23:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 120.00153 * 2 1 4 4 C 1.53006 * 109.46866 * 125.00019 * 3 2 1 5 5 C 1.50701 * 110.01499 * 58.61034 * 4 3 2 6 6 N 1.28009 * 120.00257 * 0.70008 * 5 4 3 7 7 N 1.40097 * 120.00127 * 180.02562 * 6 5 4 8 8 C 1.46498 * 120.00188 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.46838 * 329.99140 * 8 7 6 10 10 C 1.53004 * 109.47543 * 89.99478 * 8 7 6 11 11 C 1.50703 * 109.46923 * 209.99437 * 8 7 6 12 12 H 1.08003 * 119.99980 * 0.02562 * 11 8 7 13 13 C 1.37875 * 119.99896 * 179.97438 * 11 8 7 14 14 N 1.31520 * 120.00193 * 180.02562 * 13 11 8 15 15 Si 1.86803 * 119.99957 * 0.02562 * 13 11 8 16 16 H 1.48495 * 109.46887 * 90.00182 * 15 13 11 17 17 H 1.48500 * 109.47112 * 209.99852 * 15 13 11 18 18 H 1.48499 * 109.47379 * 329.99868 * 15 13 11 19 19 C 1.54266 * 110.03373 * 297.16532 * 4 3 2 20 20 C 1.54883 * 104.19342 * 217.10711 * 19 4 3 21 21 C 1.54884 * 102.74976 * 37.94325 * 20 19 4 22 22 C 1.53873 * 110.02977 * 180.02562 * 4 3 2 23 23 H 1.08003 * 120.00230 * 359.97438 * 1 2 3 24 24 H 1.07998 * 120.00438 * 180.02562 * 1 2 3 25 25 H 1.08002 * 119.99635 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47247 * 5.00188 * 3 2 1 27 27 H 1.09001 * 109.47358 * 244.99614 * 3 2 1 28 28 H 1.08001 * 119.99454 * 180.69806 * 5 4 3 29 29 H 0.97001 * 120.00064 * 359.97438 * 7 6 5 30 30 H 1.08995 * 109.46690 * 59.99996 * 10 8 7 31 31 H 1.08997 * 109.46788 * 180.02562 * 10 8 7 32 32 H 1.08996 * 109.46813 * 300.00039 * 10 8 7 33 33 H 0.96995 * 119.99874 * 179.97438 * 14 13 11 34 34 H 1.08998 * 110.48638 * 335.78849 * 19 4 3 35 35 H 1.09000 * 110.48060 * 98.42546 * 19 4 3 36 36 H 1.09004 * 110.75629 * 279.62669 * 20 19 4 37 37 H 1.09001 * 110.75582 * 156.25893 * 20 19 4 38 38 H 1.09000 * 110.48596 * 203.37518 * 21 20 19 39 39 H 1.09002 * 110.48692 * 80.73692 * 21 20 19 40 40 H 1.09006 * 110.03296 * 238.57431 * 22 4 3 41 41 H 1.09003 * 110.03167 * 359.97438 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 6 3.9945 0.1746 1.0881 6 7 3.9185 -0.6417 0.1049 7 7 4.8100 -1.7188 0.0182 8 6 4.7234 -2.6527 -1.1072 9 1 3.6904 -2.7140 -1.4497 10 6 5.6114 -2.1573 -2.2506 11 6 5.1879 -4.0165 -0.6652 12 1 5.5145 -4.1721 0.3524 13 6 5.1949 -5.0657 -1.5596 14 7 5.5998 -6.2561 -1.1738 15 14 4.6293 -4.7966 -3.3195 16 1 5.7896 -4.4001 -4.1571 17 1 4.0435 -6.0543 -3.8490 18 1 3.6053 -3.7216 -3.3515 19 6 2.2535 1.2672 2.5101 20 6 3.0448 2.1974 3.4627 21 6 3.4753 3.3561 2.5294 22 6 3.8114 2.6614 1.1944 23 1 -0.5401 0.9353 0.0004 24 1 -0.5401 -0.9352 0.0004 25 1 1.8499 -0.9354 0.0004 26 1 1.3586 2.1316 0.0896 27 1 2.6214 1.4026 -0.9313 28 1 4.7462 0.0332 1.8506 29 1 5.4852 -1.8459 0.7030 30 1 6.6442 -2.0960 -1.9080 31 1 5.5465 -2.8519 -3.0880 32 1 5.2754 -1.1709 -2.5702 33 1 5.6043 -6.9943 -1.8029 34 1 1.2371 1.6365 2.3734 35 1 2.2413 0.2476 2.8954 36 1 3.9165 1.6837 3.8682 37 1 2.4040 2.5648 4.2643 38 1 4.3548 3.8611 2.9290 39 1 2.6563 4.0628 2.3959 40 1 4.8826 2.4685 1.1335 41 1 3.4964 3.2860 0.3585 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872358758.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:38 Heat of formation + Delta-G solvation = 34.045660 kcal Electronic energy + Delta-G solvation = -18639.149687 eV Core-core repulsion = 15940.323192 eV Total energy + Delta-G solvation = -2698.826495 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.30773 -37.88172 -35.83409 -35.07895 -33.58726 -31.15939 -29.52974 -28.84046 -27.16949 -26.06961 -23.24212 -22.05771 -21.41501 -20.58278 -19.72098 -18.79962 -17.60627 -17.25308 -16.34667 -16.01737 -15.43339 -15.28884 -15.06370 -14.71498 -14.40809 -14.11077 -14.05777 -13.86301 -13.40217 -12.83384 -12.74501 -12.49856 -12.29142 -12.10626 -11.87868 -11.84288 -11.77783 -11.74619 -11.51587 -11.36893 -11.26423 -11.18328 -10.82699 -10.58857 -10.01627 -8.64114 -8.38303 -6.44733 1.28114 1.34616 1.45064 1.54374 1.62300 2.24266 2.26669 2.97590 3.75713 3.80693 3.85315 4.19976 4.27824 4.43016 4.46028 4.50485 4.60998 4.65405 4.71328 4.74903 4.80114 4.88540 4.93279 4.95605 5.03486 5.12546 5.14621 5.20189 5.28019 5.32572 5.38833 5.46081 5.50831 5.53044 5.60921 5.75390 5.97530 6.07708 6.11932 6.51882 6.66207 7.22627 7.84883 8.77961 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.029379 B = 0.005187 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.831750 B = 5397.313009 C = 5708.003441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.147 4.147 3 C -0.066 4.066 4 C 0.008 3.992 5 C 0.014 3.986 6 N -0.239 5.239 7 N -0.656 5.656 8 C 0.285 3.715 9 H 0.021 0.979 10 C -0.155 4.155 11 C -0.535 4.535 12 H 0.039 0.961 13 C 0.023 3.977 14 N -0.941 5.941 15 Si 0.950 3.050 16 H -0.260 1.260 17 H -0.292 1.292 18 H -0.253 1.253 19 C -0.105 4.105 20 C -0.123 4.123 21 C -0.116 4.116 22 C -0.110 4.110 23 H 0.114 0.886 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.061 0.939 28 H 0.095 0.905 29 H 0.369 0.631 30 H 0.051 0.949 31 H 0.040 0.960 32 H 0.051 0.949 33 H 0.270 0.730 34 H 0.081 0.919 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.059 0.941 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.221 20.956 4.984 22.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.166 4.166 3 C -0.104 4.104 4 C 0.006 3.994 5 C -0.201 4.201 6 N -0.045 5.045 7 N -0.392 5.392 8 C 0.180 3.820 9 H 0.039 0.961 10 C -0.214 4.214 11 C -0.574 4.574 12 H 0.057 0.943 13 C -0.176 4.176 14 N -0.580 5.580 15 Si 0.776 3.224 16 H -0.186 1.186 17 H -0.220 1.220 18 H -0.178 1.178 19 C -0.144 4.144 20 C -0.161 4.161 21 C -0.154 4.154 22 C -0.149 4.149 23 H 0.132 0.868 24 H 0.104 0.896 25 H 0.107 0.893 26 H 0.106 0.894 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.206 0.794 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.695 20.423 3.924 22.174 hybrid contribution 1.014 -1.073 0.277 1.502 sum -6.681 19.350 4.201 20.898 Atomic orbital electron populations 1.23881 0.95527 1.01968 1.03169 1.23219 0.96061 0.99328 0.97950 1.20729 0.97253 0.94853 0.97522 1.20009 0.92356 0.91041 0.96007 1.25715 1.01262 0.97306 0.95851 1.73493 1.11771 0.96782 1.22442 1.48212 1.35520 1.27118 1.28395 1.18361 0.94591 0.85376 0.83719 0.96083 1.22451 1.01039 0.99350 0.98585 1.21345 1.44522 0.93631 0.97912 0.94288 1.25676 0.94383 0.94329 1.03182 1.70009 1.48489 1.01964 1.37543 0.85841 0.79654 0.77190 0.79687 1.18586 1.21982 1.17773 1.22396 0.99177 0.99513 0.93282 1.22516 0.99691 0.96218 0.97643 1.22324 1.01762 0.97314 0.93953 1.22225 0.99568 0.93828 0.99236 0.86835 0.89558 0.89346 0.89428 0.92044 0.88748 0.79442 0.92998 0.94112 0.93041 0.92074 0.90017 0.93311 0.92107 0.90236 0.90858 0.90299 0.92220 0.90399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -5.20 14.32 67.78 0.97 -4.23 16 2 C -0.15 -4.30 8.07 25.65 0.21 -4.09 16 3 C -0.07 -1.60 3.98 29.85 0.12 -1.48 16 4 C 0.01 0.19 0.66 -52.20 -0.03 0.16 16 5 C 0.01 0.43 8.91 88.67 0.79 1.22 16 6 N -0.24 -9.05 7.98 -50.46 -0.40 -9.46 16 7 N -0.66 -28.72 6.09 -172.51 -1.05 -29.77 16 8 C 0.29 14.05 2.82 44.25 0.12 14.17 16 9 H 0.02 1.11 7.20 -2.39 -0.02 1.09 16 10 C -0.16 -6.88 9.00 71.98 0.65 -6.24 16 11 C -0.54 -30.90 9.32 25.60 0.24 -30.66 16 12 H 0.04 2.47 8.03 -2.91 -0.02 2.45 16 13 C 0.02 1.35 5.45 84.65 0.46 1.81 16 14 N -0.94 -58.41 13.96 21.45 0.30 -58.11 16 15 Si 0.95 45.14 24.37 68.60 1.67 46.81 16 16 H -0.26 -11.61 6.87 99.48 0.68 -10.93 16 17 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 18 H -0.25 -11.54 6.53 99.48 0.65 -10.89 16 19 C -0.11 -2.10 5.30 31.67 0.17 -1.93 16 20 C -0.12 -1.93 6.91 31.88 0.22 -1.71 16 21 C -0.12 -1.61 6.83 31.65 0.22 -1.39 16 22 C -0.11 -1.99 6.10 31.30 0.19 -1.80 16 23 H 0.11 2.21 7.84 -2.91 -0.02 2.19 16 24 H 0.09 2.19 8.06 -2.91 -0.02 2.17 16 25 H 0.09 3.31 6.06 -2.91 -0.02 3.29 16 26 H 0.09 1.63 7.77 -2.39 -0.02 1.62 16 27 H 0.06 1.65 8.11 -2.39 -0.02 1.63 16 28 H 0.10 2.78 8.00 -2.91 -0.02 2.76 16 29 H 0.37 15.77 8.56 -213.32 -1.83 13.94 16 30 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.04 1.81 3.27 -2.39 -0.01 1.80 16 32 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.27 15.63 8.31 -92.71 -0.77 14.85 16 34 H 0.08 1.46 7.84 -2.39 -0.02 1.44 16 35 H 0.05 1.16 7.84 -2.39 -0.02 1.14 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.06 1.18 7.67 -2.38 -0.02 1.16 16 41 H 0.08 1.26 7.67 -2.39 -0.02 1.24 16 Total: -1.00 -64.61 321.64 3.92 -60.69 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: -0.92 Total: 25.99 kcal Atomic # 6 Polarization: -40.48 SS G_CDS: 4.32 Total: -36.16 kcal Atomic # 7 Polarization: -96.18 SS G_CDS: -1.15 Total: -97.34 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.67 Total: 46.81 kcal Total: -64.61 3.92 -60.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872358758.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.739 kcal (2) G-P(sol) polarization free energy of solvation -64.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds