Wall clock time and date at job start Sun Mar 29 2020 22:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 110.05248 * 2 1 4 4 N 1.46900 * 109.47036 * 51.97735 * 3 2 1 5 5 C 1.46898 * 110.99745 * 78.44818 * 4 3 2 6 6 C 1.50700 * 109.47099 * 184.27070 * 5 4 3 7 7 H 1.08006 * 119.99661 * 5.15100 * 6 5 4 8 8 C 1.37874 * 119.99976 * 185.15523 * 6 5 4 9 9 N 1.31506 * 120.00328 * 0.02562 * 8 6 5 10 10 Si 1.86808 * 119.99756 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47309 * 59.99960 * 10 8 6 12 12 H 1.48504 * 109.47063 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47111 * 299.99631 * 10 8 6 14 14 C 1.46903 * 110.99475 * 202.39573 * 4 3 2 15 15 C 1.53001 * 109.47210 * 75.88433 * 14 4 3 16 16 C 1.47191 * 109.47197 * 184.83424 * 15 14 4 17 17 N 6.63243 * 82.11127 * 352.61535 * 2 1 3 18 18 C 1.53874 * 110.03423 * 238.58447 * 2 1 3 19 19 C 1.54266 * 106.63623 * 240.68877 * 18 2 1 20 20 C 1.55016 * 104.13825 * 23.62266 * 19 18 2 21 21 C 1.54259 * 110.03343 * 121.41228 * 2 1 3 22 22 H 1.09001 * 109.47242 * 185.50832 * 1 2 3 23 23 H 1.08999 * 109.47679 * 305.51458 * 1 2 3 24 24 H 1.09008 * 109.47376 * 65.51056 * 1 2 3 25 25 H 1.09002 * 109.47024 * 171.98407 * 3 2 1 26 26 H 1.09003 * 109.46727 * 291.98073 * 3 2 1 27 27 H 1.08999 * 109.47051 * 304.27153 * 5 4 3 28 28 H 1.09001 * 109.47273 * 64.26926 * 5 4 3 29 29 H 0.96999 * 120.00250 * 180.02562 * 9 8 6 30 30 H 1.09008 * 109.46861 * 195.87918 * 14 4 3 31 31 H 1.08996 * 109.47675 * 315.87481 * 14 4 3 32 32 H 1.08999 * 109.46765 * 304.83200 * 15 14 4 33 33 H 1.08997 * 109.47330 * 64.82788 * 15 14 4 34 34 H 1.09002 * 110.02989 * 359.97438 * 18 2 1 35 35 H 1.08995 * 110.03166 * 121.38135 * 18 2 1 36 36 H 1.08998 * 110.48163 * 142.31296 * 19 18 2 37 37 H 1.08993 * 110.48576 * 264.95167 * 19 18 2 38 38 H 1.08996 * 110.74008 * 203.73817 * 20 19 18 39 39 H 1.08996 * 110.92174 * 80.44521 * 20 19 18 40 40 H 1.08998 * 110.49073 * 214.35494 * 21 2 1 41 41 H 1.09002 * 110.48588 * 336.86933 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0546 1.4373 0.0000 4 7 1.4211 2.1898 1.0911 5 6 2.0467 1.8726 2.3818 6 6 1.3053 2.5802 3.4867 7 1 0.4060 3.1354 3.2642 8 6 1.7751 2.5188 4.7814 9 7 2.8704 1.8432 5.0522 10 14 0.8557 3.3953 6.1512 11 1 -0.5248 2.8564 6.2445 12 1 1.5604 3.1758 7.4398 13 1 0.8004 4.8501 5.8582 14 6 1.4619 3.6343 0.8271 15 6 0.4101 3.9904 -0.2254 16 6 0.5284 5.4154 -0.5747 17 7 0.6197 6.5152 -0.8444 18 6 2.0571 -0.7535 -1.2337 19 6 2.8882 -1.9405 -0.7045 20 6 2.3281 -2.1900 0.7192 21 6 2.0584 -0.7553 1.2368 22 1 -0.3634 -1.0229 0.0986 23 1 -0.3634 0.5970 0.8364 24 1 -0.3634 0.4260 -0.9353 25 1 3.1351 1.4297 0.1433 26 1 1.8178 1.9105 -0.9530 27 1 2.0080 0.7963 2.5495 28 1 3.0857 2.2017 2.3726 29 1 3.2007 1.7997 5.9632 30 1 1.2525 4.1781 1.7484 31 1 2.4508 3.9089 0.4601 32 1 0.5682 3.3835 -1.1168 33 1 -0.5849 3.7958 0.1749 34 1 1.2229 -1.1196 -1.8322 35 1 2.6860 -0.0951 -1.8328 36 1 2.7412 -2.8192 -1.3325 37 1 3.9446 -1.6760 -0.6582 38 1 3.0676 -2.6929 1.3424 39 1 1.4037 -2.7661 0.6784 40 1 2.9810 -0.2999 1.5966 41 1 1.3069 -0.7675 2.0263 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877138849.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:08 Heat of formation + Delta-G solvation = 11.618962 kcal Electronic energy + Delta-G solvation = -19071.518332 eV Core-core repulsion = 16371.719342 eV Total energy + Delta-G solvation = -2699.798990 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.13921 -36.89813 -35.72515 -32.71276 -31.56342 -30.25040 -28.45063 -27.13719 -25.59841 -23.68147 -23.11990 -20.34187 -20.03053 -18.29269 -17.23234 -16.28326 -15.42790 -15.19288 -14.80246 -14.52181 -14.11986 -13.63671 -13.34475 -13.14101 -12.83810 -12.63109 -12.21067 -12.12162 -11.97394 -11.85697 -11.71635 -11.08228 -11.06818 -10.84881 -10.82754 -10.73717 -10.53411 -10.24278 -10.16149 -10.03777 -9.98592 -9.96429 -9.65066 -9.02600 -8.41943 -7.30111 -6.05023 -4.05633 2.99394 3.03091 3.31769 3.36648 3.39047 4.21911 4.41979 4.84452 4.99278 5.01695 5.21853 5.30603 5.44178 5.54993 5.63697 5.72040 5.80270 5.81783 5.88500 5.95021 6.02137 6.07383 6.13385 6.17273 6.22706 6.31008 6.39193 6.50131 6.61672 6.63535 6.66312 6.81720 6.89849 7.05327 7.32883 7.37250 7.76245 7.81384 8.06127 8.15137 8.51768 9.01657 9.58299 11.05399 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.012830 B = 0.008741 C = 0.005621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.799615 B = 3202.610709 C = 4979.969042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.054 4.054 3 C 0.062 3.938 4 N -0.529 5.529 5 C 0.176 3.824 6 C -0.512 4.512 7 H 0.063 0.937 8 C 0.058 3.942 9 N -0.896 5.896 10 Si 0.892 3.108 11 H -0.276 1.276 12 H -0.289 1.289 13 H -0.278 1.278 14 C 0.063 3.937 15 C -0.026 4.026 16 C 0.219 3.781 17 N -0.459 5.459 18 C -0.116 4.116 19 C -0.123 4.123 20 C -0.128 4.128 21 C -0.110 4.110 22 H 0.038 0.962 23 H 0.080 0.920 24 H 0.041 0.959 25 H 0.028 0.972 26 H 0.057 0.943 27 H 0.058 0.942 28 H -0.009 1.009 29 H 0.261 0.739 30 H 0.098 0.902 31 H 0.026 0.974 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.397 -6.436 -10.721 12.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.054 4.054 3 C -0.066 4.066 4 N -0.253 5.253 5 C 0.052 3.948 6 C -0.551 4.551 7 H 0.081 0.919 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.720 3.280 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.204 1.204 14 C -0.067 4.067 15 C -0.067 4.067 16 C -0.099 4.099 17 N -0.137 5.137 18 C -0.154 4.154 19 C -0.161 4.161 20 C -0.166 4.166 21 C -0.147 4.147 22 H 0.057 0.943 23 H 0.099 0.901 24 H 0.060 0.940 25 H 0.046 0.954 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.008 0.992 29 H 0.071 0.929 30 H 0.116 0.884 31 H 0.044 0.956 32 H 0.118 0.882 33 H 0.131 0.869 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.628 -4.979 -10.937 12.301 hybrid contribution 0.484 0.281 0.909 1.067 sum -2.144 -4.698 -10.028 11.280 Atomic orbital electron populations 1.21760 0.93982 1.00440 1.02209 1.21075 0.96217 0.94067 0.94074 1.22247 0.96015 0.93739 0.94644 1.62019 1.56176 1.03450 1.03681 1.20203 0.92368 0.98909 0.83369 1.21156 1.10247 1.31896 0.91774 0.91896 1.24942 0.95021 0.95647 0.98741 1.69930 1.21846 1.41604 1.20155 0.86657 0.79968 0.80100 0.81264 1.20166 1.21444 1.20378 1.21912 0.94636 0.91784 0.98357 1.19441 1.03972 0.81909 1.01385 1.29464 0.92489 0.95403 0.92524 1.81159 1.09544 1.12925 1.10060 1.22273 0.99011 0.96695 0.97415 1.22349 0.99387 0.97637 0.96698 1.22570 1.00101 0.98112 0.95775 1.22672 1.01756 0.93313 0.97008 0.94272 0.90101 0.94028 0.95356 0.92428 0.92431 0.99152 0.92907 0.88382 0.95565 0.88161 0.86856 0.92109 0.92378 0.92568 0.92100 0.92242 0.92115 0.91015 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 7.99 37.16 0.30 -1.43 16 2 C -0.05 -0.76 0.75 -153.39 -0.11 -0.88 16 3 C 0.06 0.95 3.73 -3.82 -0.01 0.94 16 4 N -0.53 -9.50 3.23 -236.06 -0.76 -10.27 16 5 C 0.18 4.05 4.07 -4.98 -0.02 4.03 16 6 C -0.51 -13.15 8.06 -34.44 -0.28 -13.43 16 7 H 0.06 1.58 7.13 -52.48 -0.37 1.21 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -25.35 13.29 55.43 0.74 -24.62 16 10 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 14 C 0.06 1.05 4.72 -3.82 -0.02 1.03 16 15 C -0.03 -0.34 5.86 -29.52 -0.17 -0.51 16 16 C 0.22 3.23 15.43 -20.76 -0.32 2.91 16 17 N -0.46 -7.91 18.54 42.15 0.78 -7.13 16 18 C -0.12 -1.39 6.11 -25.61 -0.16 -1.55 16 19 C -0.12 -1.46 6.84 -25.00 -0.17 -1.63 16 20 C -0.13 -1.70 6.91 -24.67 -0.17 -1.87 16 21 C -0.11 -1.77 3.94 -25.08 -0.10 -1.86 16 22 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.08 1.28 7.25 -51.93 -0.38 0.91 16 24 H 0.04 0.50 8.14 -51.92 -0.42 0.08 16 25 H 0.03 0.48 7.78 -51.93 -0.40 0.07 16 26 H 0.06 0.76 6.44 -51.93 -0.33 0.42 16 27 H 0.06 1.37 3.92 -51.93 -0.20 1.17 16 28 H -0.01 -0.24 8.14 -51.93 -0.42 -0.67 16 29 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.10 1.89 6.22 -51.92 -0.32 1.57 16 31 H 0.03 0.44 8.00 -51.93 -0.42 0.03 16 32 H 0.10 1.07 6.69 -51.93 -0.35 0.72 16 33 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.06 0.67 7.67 -51.93 -0.40 0.27 16 35 H 0.06 0.67 7.67 -51.93 -0.40 0.27 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 1.31 6.50 -51.93 -0.34 0.98 16 41 H 0.08 1.36 7.03 -51.93 -0.37 1.00 16 LS Contribution 321.52 15.07 4.85 4.85 Total: -1.00 -28.05 321.52 -7.55 -35.60 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -6.79 Total: -1.51 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -1.34 Total: -12.78 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 0.76 Total: -42.01 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.05 -7.55 -35.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877138849.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.216 kcal (2) G-P(sol) polarization free energy of solvation -28.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds