Wall clock time and date at job start Sun Mar 29 2020 22:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46886 * 230.61530 * 3 2 1 5 5 C 1.53003 * 109.47105 * 180.02562 * 4 3 2 6 6 N 1.46894 * 109.47134 * 180.02562 * 5 4 3 7 7 C 1.46898 * 111.00041 * 45.69499 * 6 5 4 8 8 C 1.52789 * 109.41936 * 187.11714 * 7 6 5 9 9 H 1.08993 * 109.46303 * 66.18200 * 8 7 6 10 10 C 1.52999 * 109.55399 * 186.61127 * 8 7 6 11 11 N 1.47085 * 108.76646 * 306.42172 * 8 7 6 12 12 C 1.36933 * 120.88120 * 231.12691 * 11 8 7 13 13 H 1.08001 * 119.99502 * 128.20493 * 12 11 8 14 14 C 1.38808 * 120.00343 * 308.20438 * 12 11 8 15 15 N 1.31620 * 119.99747 * 338.25040 * 14 12 11 16 16 Si 1.86795 * 120.00346 * 158.24906 * 14 12 11 17 17 H 1.48499 * 109.47312 * 180.02562 * 16 14 12 18 18 H 1.48505 * 109.46977 * 299.99798 * 16 14 12 19 19 H 1.48496 * 109.47349 * 59.99661 * 16 14 12 20 20 C 1.47077 * 118.23206 * 50.85331 * 11 8 7 21 21 H 1.09002 * 109.62822 * 68.99660 * 20 11 8 22 22 C 1.53000 * 109.62600 * 189.37918 * 20 11 8 23 23 C 1.46894 * 111.00235 * 169.99907 * 6 5 4 24 24 H 4.44646 * 5.63307 * 179.97438 * 4 1 2 25 25 H 1.09007 * 109.46848 * 110.61898 * 3 2 1 26 26 H 1.08995 * 109.47061 * 350.61496 * 3 2 1 27 27 H 1.08997 * 109.47187 * 60.00004 * 4 3 2 28 28 H 1.09004 * 109.47007 * 300.00364 * 4 3 2 29 29 H 1.09003 * 109.46825 * 59.99405 * 5 4 3 30 30 H 1.09004 * 109.46642 * 299.99956 * 5 4 3 31 31 H 1.08997 * 109.49579 * 307.21290 * 7 6 5 32 32 H 1.08997 * 109.49514 * 67.29972 * 7 6 5 33 33 H 1.08997 * 109.47157 * 187.42912 * 10 8 7 34 34 H 1.09000 * 109.47503 * 307.43266 * 10 8 7 35 35 H 1.09003 * 109.47319 * 67.43102 * 10 8 7 36 36 H 0.96995 * 120.00053 * 175.07686 * 15 14 12 37 37 H 1.09004 * 109.47199 * 60.00106 * 22 20 11 38 38 H 1.09005 * 109.47212 * 180.02562 * 22 20 11 39 39 H 1.09001 * 109.47144 * 300.00442 * 22 20 11 40 40 H 1.09002 * 109.49105 * 52.78231 * 23 6 5 41 41 H 1.08998 * 109.49509 * 292.70591 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 0.9162 1.1149 5 6 4.6856 0.9174 1.1146 6 7 5.1748 1.7959 2.1854 7 6 4.4476 1.5536 3.4386 8 6 4.8574 2.5997 4.4741 9 1 4.5181 3.5836 4.1502 10 6 4.2301 2.2548 5.8263 11 7 6.3233 2.5974 4.5945 12 6 6.9277 2.4985 5.8193 13 1 7.6890 1.7510 5.9869 14 6 6.5620 3.3590 6.8452 15 7 5.9844 4.5082 6.5658 16 14 6.8895 2.8860 8.6224 17 1 6.4081 3.9673 9.5192 18 1 6.1723 1.6248 8.9392 19 1 8.3479 2.6895 8.8216 20 6 7.1226 2.6980 3.3640 21 1 7.0081 3.6927 2.9332 22 6 8.5966 2.4442 3.6865 23 6 6.6237 1.6422 2.3718 24 1 -1.0501 -0.0001 -0.0004 25 1 3.0091 0.3627 -0.9619 26 1 3.0098 -1.0130 0.1676 27 1 2.7923 0.5542 2.0767 28 1 2.7916 1.9300 0.9474 29 1 5.0483 1.2796 0.1526 30 1 5.0497 -0.0963 1.2819 31 1 3.3752 1.6215 3.2558 32 1 4.6909 0.5596 3.8139 33 1 4.4127 3.0674 6.5293 34 1 3.1561 2.1149 5.7035 35 1 4.6747 1.3362 6.2094 36 1 5.6643 5.0772 7.2832 37 1 8.7092 1.4465 4.1108 38 1 9.1866 2.5198 2.7731 39 1 8.9441 3.1861 4.4056 40 1 7.1295 1.7743 1.4153 41 1 6.8367 0.6470 2.7619 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878772586.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:13 Heat of formation + Delta-G solvation = 77.198887 kcal Electronic energy + Delta-G solvation = -19099.547046 eV Core-core repulsion = 16402.591815 eV Total energy + Delta-G solvation = -2696.955231 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.64970 -36.05902 -34.27675 -32.80469 -31.62885 -30.70879 -27.68862 -26.54870 -25.83644 -24.44647 -22.60443 -20.68551 -19.87829 -19.04483 -18.15543 -16.24876 -15.47104 -15.25984 -14.74076 -14.58271 -14.22855 -13.95942 -13.51248 -13.21192 -12.95031 -12.43272 -12.28362 -11.98780 -11.55487 -11.47256 -11.29604 -11.02847 -10.79392 -10.64325 -10.61078 -10.44131 -10.36760 -10.16305 -10.10693 -10.06118 -9.73128 -9.69541 -9.35203 -8.06360 -7.72899 -6.34027 -5.65619 -3.45737 2.75284 2.78370 3.36341 3.42979 3.45525 4.23776 4.46381 4.53055 5.04415 5.21324 5.27046 5.33650 5.39881 5.57772 5.62465 5.79097 5.90432 5.95106 5.97988 6.14266 6.20197 6.24476 6.30372 6.33345 6.45584 6.47941 6.53543 6.64840 6.77360 6.87160 7.00124 7.20534 7.26747 7.55627 7.59094 7.60743 7.75501 7.80831 7.92132 8.65647 9.26850 9.81541 10.60190 11.23085 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.028784 B = 0.005599 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.545045 B = 4999.638832 C = 5683.638455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.179 4.179 3 C -0.013 4.013 4 C -0.118 4.118 5 C 0.056 3.944 6 N -0.534 5.534 7 C 0.038 3.962 8 C 0.198 3.802 9 H 0.034 0.966 10 C -0.142 4.142 11 N -0.579 5.579 12 C -0.262 4.262 13 H 0.051 0.949 14 C 0.036 3.964 15 N -0.872 5.872 16 Si 0.878 3.122 17 H -0.290 1.290 18 H -0.280 1.280 19 H -0.279 1.279 20 C 0.171 3.829 21 H 0.032 0.968 22 C -0.130 4.130 23 C 0.050 3.950 24 H 0.215 0.785 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.026 0.974 31 H 0.065 0.935 32 H 0.024 0.976 33 H 0.085 0.915 34 H 0.021 0.979 35 H 0.047 0.953 36 H 0.253 0.747 37 H 0.047 0.953 38 H 0.035 0.965 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.832 -7.308 -10.338 13.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.179 4.179 3 C -0.050 4.050 4 C -0.156 4.156 5 C -0.072 4.072 6 N -0.258 5.258 7 C -0.092 4.092 8 C 0.092 3.908 9 H 0.052 0.948 10 C -0.200 4.200 11 N -0.304 5.304 12 C -0.392 4.392 13 H 0.068 0.932 14 C -0.166 4.166 15 N -0.512 5.512 16 Si 0.706 3.294 17 H -0.216 1.216 18 H -0.206 1.206 19 H -0.205 1.205 20 C 0.065 3.935 21 H 0.049 0.951 22 C -0.188 4.188 23 C -0.080 4.080 24 H 0.232 0.768 25 H 0.104 0.896 26 H 0.102 0.898 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.045 0.955 31 H 0.084 0.916 32 H 0.042 0.958 33 H 0.104 0.896 34 H 0.040 0.960 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -4.893 -6.624 -10.365 13.238 hybrid contribution -0.064 -1.069 1.177 1.591 sum -4.956 -7.693 -9.188 12.968 Atomic orbital electron populations 1.24868 0.95959 1.01508 1.01409 1.23216 0.94648 1.00000 1.00038 1.18748 0.84582 1.01206 1.00466 1.21712 0.95522 1.00210 0.98134 1.22101 0.94032 0.94890 0.96211 1.61962 1.04587 1.52595 1.06694 1.22881 0.97052 0.99148 0.90075 1.20194 0.84753 0.94165 0.91718 0.94814 1.21980 0.95693 1.03304 0.99044 1.44027 0.99383 1.85906 1.01058 1.18620 1.21587 1.11111 0.87847 0.93191 1.25436 0.98945 0.93486 0.98705 1.70205 1.41156 1.08175 1.31623 0.86806 0.78538 0.77986 0.86073 1.21550 1.20596 1.20499 1.20540 0.90742 0.94562 0.87659 0.95054 1.21701 0.95563 1.01973 0.99541 1.22675 0.87217 0.99005 0.99069 0.76792 0.89562 0.89792 0.91032 0.90656 0.91206 0.95539 0.91632 0.95775 0.89612 0.95973 0.93383 0.93642 0.93394 0.94645 0.91578 0.92286 0.95569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.39 19.25 29.55 0.57 -1.82 16 2 C -0.18 -2.15 13.34 -37.12 -0.50 -2.64 16 3 C -0.01 -0.14 5.70 -29.52 -0.17 -0.31 16 4 C -0.12 -1.51 4.42 -26.73 -0.12 -1.63 16 5 C 0.06 0.78 5.27 -3.83 -0.02 0.76 16 6 N -0.53 -9.67 4.78 -234.62 -1.12 -10.79 16 7 C 0.04 0.73 4.31 -3.93 -0.02 0.72 16 8 C 0.20 4.63 3.16 -67.72 -0.21 4.41 16 9 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 10 C -0.14 -3.27 7.93 37.16 0.29 -2.98 16 11 N -0.58 -14.37 2.83 -157.27 -0.45 -14.82 16 12 C -0.26 -6.96 6.79 -15.06 -0.10 -7.07 16 13 H 0.05 1.35 7.14 -52.49 -0.37 0.98 16 14 C 0.04 0.98 3.22 -17.43 -0.06 0.92 16 15 N -0.87 -24.75 11.87 55.49 0.66 -24.09 16 16 Si 0.88 20.96 29.61 -169.99 -5.03 15.92 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 20 C 0.17 3.75 3.66 -67.49 -0.25 3.50 16 21 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 22 C -0.13 -2.58 8.17 37.16 0.30 -2.27 16 23 C 0.05 0.92 4.87 -3.71 -0.02 0.91 16 24 H 0.22 1.56 7.80 -54.08 -0.42 1.14 16 25 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 26 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.99 6.18 -51.93 -0.32 0.67 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.03 0.36 8.08 -51.93 -0.42 -0.06 16 31 H 0.07 1.17 5.73 -51.93 -0.30 0.87 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.09 2.19 4.98 -51.93 -0.26 1.93 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.05 1.12 7.68 -51.93 -0.40 0.72 16 36 H 0.25 6.97 8.32 -40.82 -0.34 6.63 16 37 H 0.05 0.95 7.60 -51.93 -0.39 0.55 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 1.44 7.65 -51.93 -0.40 1.05 16 40 H 0.06 0.97 8.11 -51.93 -0.42 0.54 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 321.17 15.07 4.84 4.84 Total: -1.00 -29.01 321.17 -8.46 -37.47 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -7.07 Total: -1.04 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -0.29 Total: -7.49 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: -0.91 Total: -49.70 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.01 -8.46 -37.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878772586.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.666 kcal (2) G-P(sol) polarization free energy of solvation -29.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds