Wall clock time and date at job start Sun Mar 29 2020 22:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99936 * 2 1 4 4 C 1.38623 * 119.99991 * 179.72156 * 2 1 3 5 5 C 1.39175 * 120.48704 * 5.00173 * 4 2 1 6 6 C 1.39125 * 118.26793 * 180.02562 * 5 4 2 7 7 N 1.38638 * 120.48408 * 179.97438 * 6 5 4 8 8 C 1.46492 * 119.99730 * 359.97438 * 7 6 5 9 9 C 1.53003 * 109.47035 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47197 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.46785 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00494 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99565 * 180.02562 * 11 10 9 14 14 N 1.31519 * 120.00476 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99901 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47629 * 59.99407 * 15 13 11 17 17 H 1.48499 * 109.47228 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47251 * 299.99123 * 15 13 11 19 19 N 1.33198 * 119.03128 * 359.97438 * 6 5 4 20 20 C 1.31726 * 120.88053 * 0.02562 * 19 6 5 21 21 N 1.31754 * 121.91473 * 359.70610 * 20 19 6 22 22 H 1.08999 * 109.46892 * 90.00398 * 1 2 3 23 23 H 1.09000 * 109.46803 * 209.99571 * 1 2 3 24 24 H 1.09000 * 109.47214 * 330.00364 * 1 2 3 25 25 H 1.09004 * 109.46973 * 0.02562 * 3 2 1 26 26 H 1.08995 * 109.47424 * 119.99471 * 3 2 1 27 27 H 1.08998 * 109.47492 * 239.99896 * 3 2 1 28 28 H 1.08000 * 120.86276 * 0.02562 * 5 4 2 29 29 H 0.96994 * 119.99682 * 179.97438 * 7 6 5 30 30 H 1.08998 * 109.47673 * 299.99829 * 8 7 6 31 31 H 1.09004 * 109.47177 * 60.00375 * 8 7 6 32 32 H 1.08994 * 109.47161 * 300.00057 * 9 8 7 33 33 H 1.09004 * 109.46664 * 60.00266 * 9 8 7 34 34 H 1.08998 * 109.47280 * 300.00744 * 10 9 8 35 35 H 1.09004 * 109.46832 * 60.00693 * 10 9 8 36 36 H 0.96996 * 120.00114 * 180.02562 * 14 13 11 37 37 H 1.08007 * 119.04146 * 179.97438 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1582 -1.2005 0.0058 5 6 1.4765 -2.4099 -0.0929 6 6 2.2181 -3.5870 -0.0819 7 7 1.5861 -4.8172 -0.1771 8 6 0.1270 -4.8844 -0.2897 9 6 -0.3108 -6.3476 -0.3798 10 6 -1.8347 -6.4178 -0.4968 11 6 -2.2658 -7.8591 -0.5850 12 1 -1.5269 -8.6463 -0.5605 13 6 -3.6037 -8.1727 -0.6980 14 7 -4.5036 -7.2141 -0.7283 15 14 -4.1382 -9.9593 -0.8066 16 1 -3.7024 -10.6817 0.4154 17 1 -5.6173 -10.0274 -0.9202 18 1 -3.5202 -10.5892 -2.0009 19 7 3.5441 -3.5147 0.0214 20 6 4.1526 -2.3500 0.1128 21 7 3.4865 -1.2133 0.1007 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.4892 2.0972 0.0005 26 1 2.8241 1.3266 0.8900 27 1 2.8242 1.3265 -0.8899 28 1 0.4000 -2.4339 -0.1758 29 1 2.1100 -5.6335 -0.1691 30 1 -0.3268 -4.4224 0.5871 31 1 -0.1930 -4.3539 -1.1865 32 1 0.1429 -6.8092 -1.2568 33 1 0.0093 -6.8785 0.5168 34 1 -2.2881 -5.9562 0.3804 35 1 -2.1551 -5.8869 -1.3933 36 1 -5.4448 -7.4348 -0.8074 37 1 5.2292 -2.3260 0.1957 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892326538.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:21 Heat of formation + Delta-G solvation = 46.551708 kcal Electronic energy + Delta-G solvation = -17484.248837 eV Core-core repulsion = 14682.424301 eV Total energy + Delta-G solvation = -2801.824535 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.68179 -37.35315 -36.38128 -33.84928 -32.32406 -31.33115 -30.10049 -28.28476 -26.58467 -25.62102 -23.92295 -22.47010 -21.40198 -20.41452 -17.84127 -17.54078 -16.35653 -15.58069 -15.39320 -15.13449 -14.93805 -14.91757 -14.49565 -13.93462 -13.90732 -13.83682 -12.76872 -12.46052 -12.33333 -12.27084 -12.13748 -11.85573 -11.11544 -10.85840 -10.83202 -10.63952 -10.31882 -10.20985 -9.81292 -9.54829 -9.20319 -9.00376 -8.41459 -8.07980 -7.78231 -6.06747 -4.09620 1.42943 1.78525 2.78405 3.29950 3.32655 3.34559 3.38089 4.20416 4.41098 4.44607 4.73801 4.96226 5.08025 5.17586 5.28014 5.29435 5.48530 5.52728 5.53751 5.61753 5.62836 5.65351 5.76857 6.00694 6.24218 6.50479 6.58183 6.64038 6.89911 7.02673 7.26667 7.56268 7.62281 7.68370 7.88050 7.91634 8.33143 8.59423 8.96493 9.54955 11.04526 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.034687 B = 0.003707 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.033958 B = 7551.066581 C = 8320.570073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.612 5.612 3 C 0.107 3.893 4 C 0.456 3.544 5 C -0.361 4.361 6 C 0.462 3.538 7 N -0.707 5.707 8 C 0.123 3.877 9 C -0.121 4.121 10 C 0.026 3.974 11 C -0.524 4.524 12 H 0.055 0.945 13 C 0.058 3.942 14 N -0.895 5.895 15 Si 0.894 3.106 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 N -0.616 5.616 20 C 0.370 3.630 21 N -0.618 5.618 22 H 0.055 0.945 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.138 0.862 29 H 0.406 0.594 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.262 0.738 37 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.847 14.747 1.592 18.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.326 5.326 3 C -0.036 4.036 4 C 0.218 3.782 5 C -0.394 4.394 6 C 0.220 3.780 7 N -0.336 5.336 8 C -0.001 4.001 9 C -0.159 4.159 10 C -0.012 4.012 11 C -0.562 4.562 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.534 5.534 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 N -0.346 5.346 20 C 0.078 3.922 21 N -0.347 5.347 22 H 0.073 0.927 23 H 0.093 0.907 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.155 0.845 29 H 0.242 0.758 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 12.198 14.960 1.619 19.370 hybrid contribution -1.131 -1.274 -0.137 1.709 sum 11.067 13.686 1.481 17.663 Atomic orbital electron populations 1.21774 0.78038 1.03255 1.01908 1.46145 1.05345 1.03071 1.78010 1.21498 0.96359 0.83636 1.02112 1.18114 0.88259 0.85444 0.86424 1.21299 1.01797 0.91175 1.25159 1.18268 0.87976 0.86439 0.85302 1.44852 1.07547 1.04520 1.76711 1.21741 0.77005 1.00359 1.00983 1.21884 1.01119 0.91672 1.01237 1.19019 0.87328 0.97372 0.97474 1.21167 0.92083 0.92305 1.50648 0.92640 1.25015 0.96804 0.97356 0.95192 1.69944 1.01250 1.31905 1.50291 0.86633 0.77416 0.85128 0.78683 1.20205 1.21249 1.20201 1.67941 1.08773 1.30463 1.27385 1.24234 0.99769 0.81219 0.86992 1.67902 1.06697 1.32035 1.28078 0.92656 0.90725 0.90974 0.91346 0.92360 0.92558 0.84466 0.75849 0.92039 0.92014 0.92498 0.92504 0.96299 0.96297 0.92855 0.79329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.84 10.06 59.85 0.60 1.44 16 2 N -0.61 -7.03 3.38 -189.55 -0.64 -7.67 16 3 C 0.11 0.96 10.22 59.85 0.61 1.57 16 4 C 0.46 6.50 7.38 -154.71 -1.14 5.36 16 5 C -0.36 -5.38 8.47 -38.90 -0.33 -5.71 16 6 C 0.46 7.30 7.70 -154.69 -1.19 6.11 16 7 N -0.71 -10.84 5.71 -60.33 -0.34 -11.19 16 8 C 0.12 1.99 4.92 -4.04 -0.02 1.97 16 9 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 10 C 0.03 0.63 4.97 -27.88 -0.14 0.49 16 11 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 12 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 15 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 19 N -0.62 -9.47 10.47 -13.88 -0.15 -9.62 16 20 C 0.37 4.97 12.28 -92.25 -1.13 3.84 16 21 N -0.62 -8.78 9.70 -13.88 -0.13 -8.92 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.07 0.72 6.43 -51.93 -0.33 0.38 16 24 H 0.07 0.48 7.92 -51.93 -0.41 0.07 16 25 H 0.07 0.43 7.79 -51.93 -0.40 0.03 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.14 1.93 5.18 -52.49 -0.27 1.66 16 29 H 0.41 5.91 8.60 -40.82 -0.35 5.55 16 30 H 0.06 0.99 7.97 -51.93 -0.41 0.58 16 31 H 0.06 1.00 7.97 -51.93 -0.41 0.59 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.19 1.81 8.06 -52.48 -0.42 1.39 16 LS Contribution 312.22 15.07 4.71 4.71 Total: -1.00 -31.43 312.22 -9.66 -41.09 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -5.52 Total: 1.44 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -3.29 Total: -0.59 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: -0.53 Total: -62.91 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.43 -9.66 -41.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892326538.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.642 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds