Wall clock time and date at job start Sun Mar 29 2020 22:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99936 * 2 1 4 4 C 1.38623 * 119.99991 * 179.72156 * 2 1 3 5 5 C 1.39175 * 120.48704 * 5.00173 * 4 2 1 6 6 C 1.39125 * 118.26793 * 180.02562 * 5 4 2 7 7 N 1.38638 * 120.48408 * 179.97438 * 6 5 4 8 8 C 1.46492 * 119.99730 * 359.97438 * 7 6 5 9 9 C 1.53003 * 109.47035 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47197 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.46785 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00494 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99565 * 180.02562 * 11 10 9 14 14 N 1.31519 * 120.00476 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99901 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47629 * 59.99407 * 15 13 11 17 17 H 1.48499 * 109.47228 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47251 * 299.99123 * 15 13 11 19 19 N 1.33198 * 119.03128 * 359.97438 * 6 5 4 20 20 C 1.31726 * 120.88053 * 0.02562 * 19 6 5 21 21 N 1.31754 * 121.91473 * 359.70610 * 20 19 6 22 22 H 1.08999 * 109.46892 * 90.00398 * 1 2 3 23 23 H 1.09000 * 109.46803 * 209.99571 * 1 2 3 24 24 H 1.09000 * 109.47214 * 330.00364 * 1 2 3 25 25 H 1.09004 * 109.46973 * 0.02562 * 3 2 1 26 26 H 1.08995 * 109.47424 * 119.99471 * 3 2 1 27 27 H 1.08998 * 109.47492 * 239.99896 * 3 2 1 28 28 H 1.08000 * 120.86276 * 0.02562 * 5 4 2 29 29 H 0.96994 * 119.99682 * 179.97438 * 7 6 5 30 30 H 1.08998 * 109.47673 * 299.99829 * 8 7 6 31 31 H 1.09004 * 109.47177 * 60.00375 * 8 7 6 32 32 H 1.08994 * 109.47161 * 300.00057 * 9 8 7 33 33 H 1.09004 * 109.46664 * 60.00266 * 9 8 7 34 34 H 1.08998 * 109.47280 * 300.00744 * 10 9 8 35 35 H 1.09004 * 109.46832 * 60.00693 * 10 9 8 36 36 H 0.96996 * 120.00114 * 180.02562 * 14 13 11 37 37 H 1.08007 * 119.04146 * 179.97438 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1582 -1.2005 0.0058 5 6 1.4765 -2.4099 -0.0929 6 6 2.2181 -3.5870 -0.0819 7 7 1.5861 -4.8172 -0.1771 8 6 0.1270 -4.8844 -0.2897 9 6 -0.3108 -6.3476 -0.3798 10 6 -1.8347 -6.4178 -0.4968 11 6 -2.2658 -7.8591 -0.5850 12 1 -1.5269 -8.6463 -0.5605 13 6 -3.6037 -8.1727 -0.6980 14 7 -4.5036 -7.2141 -0.7283 15 14 -4.1382 -9.9593 -0.8066 16 1 -3.7024 -10.6817 0.4154 17 1 -5.6173 -10.0274 -0.9202 18 1 -3.5202 -10.5892 -2.0009 19 7 3.5441 -3.5147 0.0214 20 6 4.1526 -2.3500 0.1128 21 7 3.4865 -1.2133 0.1007 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.4892 2.0972 0.0005 26 1 2.8241 1.3266 0.8900 27 1 2.8242 1.3265 -0.8899 28 1 0.4000 -2.4339 -0.1758 29 1 2.1100 -5.6335 -0.1691 30 1 -0.3268 -4.4224 0.5871 31 1 -0.1930 -4.3539 -1.1865 32 1 0.1429 -6.8092 -1.2568 33 1 0.0093 -6.8785 0.5168 34 1 -2.2881 -5.9562 0.3804 35 1 -2.1551 -5.8869 -1.3933 36 1 -5.4448 -7.4348 -0.8074 37 1 5.2292 -2.3260 0.1957 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892326538.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:20 Heat of formation + Delta-G solvation = 28.439089 kcal Electronic energy + Delta-G solvation = -17485.034259 eV Core-core repulsion = 14682.424301 eV Total energy + Delta-G solvation = -2802.609958 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.75058 -38.41651 -37.55264 -35.62789 -33.85035 -32.64073 -31.35665 -29.16721 -28.22572 -26.54630 -25.42713 -23.84554 -22.48760 -22.02561 -18.95386 -18.71452 -18.30331 -16.63926 -16.60252 -16.35127 -16.20441 -16.14865 -16.01976 -15.05468 -15.02132 -14.86387 -14.25282 -13.84255 -13.70883 -13.45984 -13.17747 -12.82586 -12.81185 -12.56734 -12.41320 -12.23670 -11.65293 -11.51632 -11.39991 -11.22060 -11.16210 -10.54352 -10.11238 -9.17465 -8.80840 -8.20207 -6.30622 0.35660 0.66158 1.41633 1.43676 1.51536 1.90413 2.14380 2.42309 3.11242 3.13764 3.50911 3.76823 4.02335 4.11255 4.19605 4.29675 4.39271 4.47699 4.52790 4.59550 4.68232 4.78906 4.88146 4.93084 4.94859 4.96629 5.14648 5.31804 5.50550 5.70148 5.71382 5.83900 5.90259 6.23696 6.29684 6.49767 6.75688 6.85667 7.38566 7.51152 8.91271 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.034687 B = 0.003707 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.033958 B = 7551.066581 C = 8320.570073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.612 5.612 3 C 0.105 3.895 4 C 0.446 3.554 5 C -0.375 4.375 6 C 0.448 3.552 7 N -0.706 5.706 8 C 0.140 3.860 9 C -0.105 4.105 10 C 0.028 3.972 11 C -0.546 4.546 12 H 0.060 0.940 13 C 0.002 3.998 14 N -0.931 5.931 15 Si 0.962 3.038 16 H -0.268 1.268 17 H -0.284 1.284 18 H -0.268 1.268 19 N -0.632 5.632 20 C 0.367 3.633 21 N -0.625 5.625 22 H 0.060 0.940 23 H 0.065 0.935 24 H 0.100 0.900 25 H 0.099 0.901 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.140 0.860 29 H 0.409 0.591 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.060 0.940 34 H -0.001 1.001 35 H -0.002 1.002 36 H 0.264 0.736 37 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.542 15.054 1.691 19.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.324 5.324 3 C -0.037 4.037 4 C 0.206 3.794 5 C -0.408 4.408 6 C 0.207 3.793 7 N -0.337 5.337 8 C 0.016 3.984 9 C -0.143 4.143 10 C -0.010 4.010 11 C -0.584 4.584 12 H 0.079 0.921 13 C -0.196 4.196 14 N -0.571 5.571 15 Si 0.787 3.213 16 H -0.193 1.193 17 H -0.209 1.209 18 H -0.193 1.193 19 N -0.362 5.362 20 C 0.076 3.924 21 N -0.354 5.354 22 H 0.079 0.921 23 H 0.083 0.917 24 H 0.118 0.882 25 H 0.117 0.883 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.157 0.843 29 H 0.245 0.755 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.017 0.983 35 H 0.017 0.983 36 H 0.073 0.927 37 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 12.906 15.299 1.719 20.089 hybrid contribution -1.322 -1.251 -0.163 1.827 sum 11.583 14.048 1.556 18.274 Atomic orbital electron populations 1.21950 0.76751 1.04203 1.02529 1.46489 1.06354 1.02980 1.76615 1.21645 0.97032 0.83414 1.01659 1.18413 0.88552 0.86335 0.86139 1.21383 1.01988 0.91433 1.26026 1.18437 0.88529 0.86543 0.85827 1.44636 1.06872 1.04835 1.77326 1.21392 0.77833 0.98168 1.01036 1.21595 0.97319 0.93807 1.01580 1.18904 0.90878 0.95702 0.95473 1.21653 0.92588 0.93795 1.50333 0.92145 1.25925 0.96986 1.01920 0.94792 1.70069 1.01585 1.34162 1.51260 0.85545 0.77001 0.79665 0.79112 1.19285 1.20906 1.19287 1.67979 1.08551 1.31407 1.28297 1.24973 1.01198 0.80573 0.85654 1.68007 1.06714 1.32277 1.28437 0.92150 0.91672 0.88165 0.88272 0.92734 0.93023 0.84267 0.75470 0.92004 0.92073 0.92106 0.92082 0.98306 0.98342 0.92741 0.75935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.44 10.06 127.77 1.29 2.73 16 2 N -0.61 -13.13 3.38 -753.62 -2.55 -15.67 16 3 C 0.10 1.67 10.22 127.77 1.31 2.97 16 4 C 0.45 12.31 7.38 132.97 0.98 13.29 16 5 C -0.37 -11.04 8.47 22.71 0.19 -10.84 16 6 C 0.45 13.94 7.70 132.95 1.02 14.96 16 7 N -0.71 -21.35 5.71 -344.80 -1.97 -23.32 16 8 C 0.14 4.52 4.92 86.38 0.43 4.95 16 9 C -0.11 -4.01 5.27 30.60 0.16 -3.85 16 10 C 0.03 1.41 4.97 29.85 0.15 1.55 16 11 C -0.55 -30.17 9.11 25.60 0.23 -29.94 16 12 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 13 C 0.00 0.11 5.46 84.65 0.46 0.57 16 14 N -0.93 -55.27 13.29 21.45 0.28 -54.98 16 15 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 16 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 19 N -0.63 -18.88 10.47 -197.83 -2.07 -20.95 16 20 C 0.37 9.37 12.28 180.92 2.22 11.59 16 21 N -0.62 -17.00 9.70 -197.82 -1.92 -18.92 16 22 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.06 1.20 6.43 -2.39 -0.02 1.19 16 24 H 0.10 1.07 7.92 -2.39 -0.02 1.05 16 25 H 0.10 0.96 7.79 -2.38 -0.02 0.94 16 26 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.14 3.91 5.18 -2.91 -0.02 3.90 16 29 H 0.41 11.65 8.60 -92.71 -0.80 10.85 16 30 H 0.06 2.00 7.97 -2.39 -0.02 1.98 16 31 H 0.06 1.99 7.97 -2.38 -0.02 1.97 16 32 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 34 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 35 H 0.00 -0.10 8.14 -2.38 -0.02 -0.12 16 36 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 37 H 0.22 3.79 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -66.85 312.22 2.51 -64.34 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.27 Total: 16.07 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 8.44 Total: 7.99 kcal Atomic # 7 Polarization: -125.63 SS G_CDS: -8.22 Total: -133.86 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -66.85 2.51 -64.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892326538.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.775 kcal (2) G-P(sol) polarization free energy of solvation -66.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds